genome.fa.s113.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  78  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16519921--16519971	26	2.0	26	84	7	68	23	17	27	31	1.97
16520106--16520158	26	2.0	26	92	7	90	28	20	24	26	1.99
16519762--16520225	185	2.5	183	81	3	554	25	27	27	19	1.99
16520131--16520539	157	2.6	157	75	7	380	23	28	28	19	1.98
16520131--16520567	159	2.8	156	75	6	427	22	29	28	19	1.98
16520605--16520657	26	2.0	26	88	0	79	26	18	26	28	1.98
16520511--16520904	197	2.0	196	86	1	556	23	29	29	17	1.97
16520986--16521279	159	1.9	158	83	0	390	24	30	25	19	1.98
16521292--16521344	26	2.0	26	88	0	79	24	22	26	26	2.00
16519604--16521513	686	2.8	686	81	5	2211	23	28	27	20	1.99
16520946--16521884	514	1.8	514	86	1	1362	23	28	26	21	1.99
16521497--16521796	159	1.9	158	81	0	366	24	29	27	18	1.98
16521806--16521858	26	2.0	26	89	7	81	26	18	26	28	1.98
16522539--16522589	26	2.0	26	88	7	77	33	15	23	27	1.95
16523590--16523642	26	2.0	26	88	0	79	26	18	26	28	1.98
16524277--16524329	26	2.0	26	88	0	79	28	18	26	26	1.98
16524761--16525103	158	2.2	158	77	6	343	22	29	26	21	1.99
16525077--16525129	26	2.0	26	92	0	88	22	22	28	26	1.99
16525370--16525431	26	2.4	26	91	0	97	29	19	25	25	1.99
16525582--16525634	26	2.0	26	89	7	81	28	18	24	28	1.98
16525766--16526175	159	2.6	158	83	3	504	25	31	26	16	1.97
16526173--16526232	26	2.3	26	100	0	120	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16526864--16527205	159	2.2	159	79	4	363	23	29	27	19	1.98
16527179--16527231	26	2.0	26	89	7	81	24	18	30	26	1.98
16527902--16527953	26	2.0	25	85	10	70	28	17	25	28	1.97
16528788--16528840	26	2.0	26	89	7	81	30	18	22	28	1.98
16528629--16529049	184	2.3	184	83	4	508	25	26	25	22	2.00
16530120--16530170	26	2.0	26	92	0	84	27	19	27	25	1.99
16529721--16530747	550	1.9	551	81	4	1275	22	29	27	21	1.99
16531758--16531810	26	2.0	26	88	0	79	28	28	20	22	1.99
16532232--16532284	26	2.0	26	89	7	81	28	24	18	28	1.98
16532871--16533325	159	2.9	157	79	3	457	18	28	30	22	1.97
16534922--16534974	26	2.0	26	92	0	88	28	28	18	24	1.98
16533174--16535133	914	2.2	895	87	3	2759	24	24	24	26	2.00
16535756--16535808	26	2.0	26	92	7	90	26	24	20	28	1.99
16535114--16536083	491	2.0	486	86	4	1337	21	25	27	25	1.99
16536958--16537010	26	2.0	26	82	7	63	30	24	16	28	1.97
16537200--16537266	32	2.1	33	88	2	100	22	29	35	11	1.90
16537332--16537384	26	2.0	26	85	7	72	26	26	20	26	1.99
16538030--16538082	26	2.0	26	92	7	90	26	20	20	32	1.98
16538239--16538291	26	2.0	26	92	0	88	26	26	20	26	1.99
16539190--16539239	26	1.9	26	91	0	82	26	28	18	28	1.98
16539662--16539713	26	2.0	26	88	7	79	28	23	19	28	1.98
16540384--16540433	26	1.9	26	88	8	75	24	28	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540885--16540937	26	2.0	26	82	13	65	26	22	18	32	1.97
16541081--16541133	26	2.0	26	96	0	97	26	28	20	24	1.99
16541424--16541476	26	2.0	26	89	7	81	28	24	18	28	1.98
16542828--16542880	26	2.0	26	92	0	88	32	24	16	26	1.97
16544231--16544885	159	4.1	157	77	4	523	19	28	29	22	1.98
16545054--16545106	26	2.0	26	89	7	81	30	26	18	24	1.98
16545238--16545291	26	2.0	26	82	10	65	22	22	25	29	1.99
16545017--16545647	184	3.4	183	74	9	579	21	26	28	24	1.99
16545589--16545893	158	1.9	159	87	0	450	18	27	30	23	1.97
16546095--16546147	26	2.0	26	89	7	81	24	24	22	28	2.00
16546438--16546490	26	2.0	26	85	7	72	28	22	18	30	1.98
16546352--16546706	195	1.8	195	87	2	525	20	26	27	24	1.99
16546633--16546683	26	2.0	26	88	7	77	29	31	13	25	1.94
16546693--16547004	159	2.0	157	85	5	423	17	27	32	22	1.97
16546979--16547028	26	1.9	26	84	8	66	24	26	18	32	1.97
16545987--16547029	538	1.9	539	83	3	1359	19	27	29	23	1.99
16547681--16547733	26	2.0	26	85	7	72	30	26	16	26	1.97
16548182--16548232	26	2.0	26	84	7	68	35	23	13	27	1.93
16548378--16548430	26	2.0	26	85	7	72	30	26	16	26	1.97
16549056--16549108	26	2.0	26	85	7	72	28	24	18	28	1.98
16551491--16551543	26	2.0	26	92	0	88	30	26	16	26	1.97
16553183--16553510	159	2.1	158	81	1	370	18	23	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16553702--16553753	25	2.0	26	92	3	88	28	26	19	25	1.98
16553885--16553937	26	2.0	26	92	0	88	26	30	20	22	1.98
16553671--16554096	184	2.3	183	80	4	446	22	27	25	24	2.00
16555670--16555997	159	2.1	158	81	1	379	18	24	31	25	1.97
16556190--16556241	25	2.0	26	92	3	88	28	26	19	25	1.98
16556373--16556425	26	2.0	26	92	0	88	26	30	20	22	1.98
16556159--16556584	184	2.3	183	80	4	446	22	27	25	24	2.00
16557781--16557833	26	2.0	26	85	7	72	26	26	18	28	1.98
16558514--16558994	158	3.0	157	72	8	443	19	26	29	24	1.99
16559176--16559228	26	2.0	26	89	7	81	26	24	20	28	1.99
16559359--16559411	26	2.0	26	89	7	81	28	22	18	30	1.98
16565722--16565774	26	2.0	26	92	0	88	26	26	20	26	1.99
16566072--16566431	185	2.0	183	83	3	454	21	25	27	25	1.99
16566577--16566629	26	2.0	26	92	7	90	28	26	20	24	1.99
16566602--16567105	158	3.2	156	77	8	482	19	28	30	21	1.98
16567765--16567817	26	2.0	26	96	0	97	26	24	20	28	1.99
16569258--16569310	26	2.0	26	89	7	81	28	24	18	28	1.98
16569404--16569443	13	3.1	13	85	0	53	7	47	20	25	1.75
16569480--16569532	26	2.0	26	88	0	79	30	28	16	24	1.97
16569822--16569874	26	2.0	26	88	0	79	24	22	20	32	1.98
16570044--16570546	159	3.2	156	75	6	483	20	25	29	24	1.99
16571225--16571277	26	2.0	26	92	0	88	24	24	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16571948--16572000	26	2.0	26	96	0	97	30	28	16	24	1.97
16572486--16572538	26	2.0	26	92	0	88	26	26	20	26	1.99
16572192--16572558	195	1.9	196	82	5	474	21	26	27	24	1.99
16572512--16572855	158	2.2	158	81	2	386	18	26	31	23	1.97
16572828--16572880	26	2.0	26	85	0	70	24	22	18	33	1.97
16573585--16573978	159	2.5	158	73	6	366	21	25	30	22	1.98
16574053--16574105	26	2.0	26	89	7	81	30	24	18	26	1.98
16574446--16574498	26	2.0	26	85	7	72	28	22	18	30	1.98
16574642--16574694	26	2.0	26	92	0	88	28	28	18	24	1.98
16574725--16575011	159	1.8	158	80	3	344	17	29	31	21	1.97
16574668--16575169	158	3.2	158	75	6	390	19	27	30	22	1.98
16575304--16575356	26	2.0	26	85	0	70	24	24	22	28	2.00
16575388--16575674	159	1.8	158	84	0	394	18	28	28	23	1.98
16575647--16575725	26	3.0	26	92	3	133	26	22	20	30	1.98
16576336--16576388	26	2.0	26	88	0	79	28	26	18	26	1.98
16576369--16576806	158	2.8	158	77	6	463	19	27	29	22	1.98
16577022--16577072	26	2.0	26	92	0	84	27	29	19	23	1.98
16577558--16577610	26	2.0	26	89	7	81	26	22	18	32	1.97
16578399--16578452	26	2.1	26	89	0	81	24	24	22	29	1.99
16580321--16580373	26	2.0	26	88	0	79	30	28	16	24	1.97
16581018--16581069	26	2.0	26	85	7	70	30	25	15	28	1.96
16581513--16581564	26	2.0	26	88	0	77	30	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16580947--16581871	501	1.9	495	84	3	1239	20	28	28	23	1.99
16581856--16581906	26	2.0	26	88	0	75	27	23	17	31	1.97
16582574--16582626	26	2.0	26	82	13	65	33	24	16	24	1.96
16583072--16583124	26	2.0	26	85	7	72	30	24	16	28	1.97
16583985--16584037	26	2.0	26	89	7	81	26	24	20	28	1.99
16584168--16584221	26	2.1	26	86	6	74	27	24	22	25	2.00
16584907--16584959	26	2.0	26	89	7	81	30	28	16	24	1.97
16584933--16585593	159	4.2	158	76	3	567	20	27	29	22	1.99
16586949--16587001	26	2.0	26	96	0	97	26	28	20	24	1.99
16586975--16587318	158	2.2	158	85	2	449	19	27	30	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100