Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  15  of  100  ( 11964 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4147381--4147828
218
2.0
222
90
5
708
39
12
13
34
1.82
4157458--4157483
11
2.4
11
100
0
52
53
0
0
46
1.00
4158798--4158841
12
3.5
12
84
6
52
52
0
0
47
1.00
4170740--4170776
2
18.5
2
100
0
74
48
0
0
51
1.00
4182818--4182861
22
2.0
22
81
4
52
52
2
2
43
1.26
4183870--4183926
27
2.1
28
90
3
89
63
0
0
36
0.95
4183869--4183911
22
1.9
22
85
4
59
69
0
0
30
0.88
4184820--4184909
28
3.1
28
84
4
108
34
3
4
57
1.35
4184820--4184924
28
3.6
28
82
8
102
36
2
4
56
1.35
4184971--4185010
9
4.2
9
81
12
53
72
0
0
27
0.85
4184959--4185011
20
2.7
19
86
13
65
69
0
0
30
0.88
4189214--4189255
21
2.0
21
85
0
57
16
2
4
76
1.07
4190617--4190651
8
4.1
8
96
3
52
82
5
11
0
0.82
4190616--4190651
9
4.1
9
92
7
56
83
5
11
0
0.80
4190616--4190651
17
2.1
18
89
5
56
83
5
11
0
0.80
4199655--4199711
29
2.0
29
89
0
87
49
1
8
40
1.44
4199948--4199988
3
13.7
3
100
0
82
34
0
0
65
0.93
4204038--4204096
20
2.8
19
82
14
64
5
5
6
83
0.92
4216545--4216589
21
2.0
23
83
8
58
44
0
13
42
1.43
4226468--4226509
20
2.3
17
88
12
57
66
0
0
33
0.92
4226406--4226511
55
2.0
56
80
12
125
52
0
0
46
1.06
4249849--4249881
13
2.6
13
90
4
50
42
0
30
27
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4255818--4255844
2
13.5
2
100
0
54
0
48
0
51
1.00
4256428--4256478
27
1.9
27
84
11
70
62
0
0
37
0.95
4258019--4258072
12
4.4
12
75
11
56
51
1
1
44
1.22
4258009--4258079
23
3.0
23
71
18
58
49
1
1
47
1.18
4258082--4258149
25
2.8
23
73
24
59
38
1
0
60
1.06
4261438--4261498
28
2.1
30
81
6
72
34
9
19
36
1.85
4265758--4265788
2
15.5
2
100
0
62
51
0
0
48
1.00
4268650--4268747
2
49.0
2
100
0
196
0
50
0
50
1.00
4269953--4269990
19
2.0
20
89
5
60
52
7
10
28
1.64
4278970--4279265
147
2.0
148
94
2
524
31
21
25
21
1.98
4280354--4280403
19
2.5
20
73
17
50
48
2
0
50
1.12
4281371--4281416
25
1.9
23
82
8
56
65
2
2
30
1.16
4281452--4281508
29
2.0
29
82
6
71
47
0
1
50
1.11
4281491--4281535
15
3.1
15
83
3
56
53
2
0
44
1.13
4287547--4287582
17
2.1
17
89
0
54
52
0
2
44
1.15
4296695--4296734
20
2.0
21
85
14
57
25
10
15
50
1.74
4297830--4297895
34
1.9
34
87
0
96
36
7
10
45
1.67
4301152--4301186
16
2.2
17
90
10
56
82
0
14
2
0.77
4308852--4308889
19
2.1
18
90
5
58
31
5
0
63
1.17
4316931--4316965
16
2.1
17
89
5
54
11
14
0
74
1.08
4317043--4317233
92
2.1
93
81
5
217
37
17
2
42
1.63
4338295--4338319
11
2.3
11
100
0
50
44
8
8
40
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4340042--4340113
21
3.5
20
81
10
83
40
6
6
45
1.58
4340058--4340139
42
2.0
42
85
4
112
37
7
7
47
1.59
4340144--4340183
21
1.9
21
90
10
64
32
7
10
50
1.64
4340270--4340312
20
2.0
22
82
13
54
37
9
0
53
1.33
4340417--4340458
22
1.9
22
85
9
59
50
9
4
35
1.56
4340447--4340602
22
7.1
22
76
0
105
37
8
7
46
1.63
4340425--4340625
44
4.6
44
78
0
168
39
7
7
44
1.62
4340579--4340707
22
5.9
22
71
9
84
42
6
6
44
1.56
4340544--4340683
66
2.1
66
84
7
178
39
5
7
47
1.57
4340566--4340670
44
2.4
44
81
10
117
39
5
8
46
1.58
4340588--4340683
11
8.7
11
68
6
61
40
6
6
46
1.54
4340648--4340752
52
2.0
52
83
7
133
43
9
1
44
1.47
4340702--4341135
22
20.0
22
69
13
123
39
9
3
47
1.54
4340925--4340957
16
2.1
15
94
5
57
36
6
6
51
1.51
4341103--4341158
11
5.2
11
69
4
51
35
3
7
53
1.46
4341103--4341164
22
2.9
21
83
7
72
37
3
6
53
1.43
4341530--4341589
22
2.7
23
84
7
79
43
6
8
41
1.61
4341746--4342405
22
30.7
21
66
13
107
35
8
6
49
1.58
4341886--4341984
43
2.3
44
86
8
132
33
6
10
50
1.61
4341959--4342085
65
2.0
65
82
3
157
37
7
5
49
1.55
4342135--4342291
66
2.4
66
77
2
163
35
8
6
49
1.60
4344168--4344210
23
1.9
22
81
13
52
41
9
18
30
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4345531--4345592
16
3.8
16
81
10
72
72
0
3
24
0.99
4346704--4346732
14
2.0
15
93
6
51
55
0
0
44
0.99
4346886--4346910
2
12.5
2
100
0
50
52
0
0
48
1.00
4346944--4346972
14
2.0
15
93
6
51
55
0
0
44
0.99
4346663--4347151
241
2.0
240
95
0
879
47
4
4
44
1.41
4347126--4347151
2
13.0
2
100
0
52
50
0
0
50
1.00
4349256--4349314
29
2.0
29
100
0
118
30
20
10
38
1.86
4351827--4351861
18
2.0
17
94
5
61
37
11
0
51
1.38
4352517--4352567
18
2.7
20
82
17
72
54
0
0
45
0.99
4354964--4354990
2
13.5
2
100
0
54
0
48
0
51
1.00
4355840--4355906
11
6.1
11
69
19
50
37
0
1
61
1.05
4355834--4355881
20
2.3
20
85
7
60
33
0
2
64
1.05
4355954--4355997
18
2.5
18
82
10
56
65
0
2
31
1.05
4355951--4355997
20
2.5
19
83
13
53
65
0
4
29
1.11
4370338--4370375
17
2.2
17
86
9
51
15
2
5
76
1.08
4371213--4371259
2
23.5
2
100
0
94
48
0
0
51
1.00
4389911--4389940
5
5.8
5
92
7
51
83
0
0
16
0.65
4389911--4389940
16
1.9
16
93
6
53
83
0
0
16
0.65
4390062--4390195
58
2.3
58
83
6
164
34
11
5
49
1.61
4390062--4390200
57
2.4
56
82
7
163
35
10
5
47
1.62
4390662--4390759
3
32.3
3
78
15
53
69
0
4
26
1.06
4390688--4390764
4
18.8
4
75
15
52
74
0
2
23
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4390719--4390761
5
8.6
5
82
10
52
81
0
2
16
0.79
4390713--4390763
25
2.0
25
96
0
93
80
0
1
17
0.81
4390971--4391098
42
3.1
42
80
4
127
41
21
13
24
1.88
4390995--4391098
42
2.5
41
83
6
129
45
19
10
25
1.82
4391584--4391699
25
4.8
24
75
14
87
36
15
9
38
1.80
4391611--4391699
46
1.9
46
86
0
124
34
16
11
37
1.85
4392883--4392969
19
4.3
20
75
18
74
12
11
0
75
1.04
4392879--4392987
29
3.6
29
70
17
78
11
16
0
71
1.14
4392893--4392938
11
4.1
11
80
5
56
15
4
0
80
0.86
4392922--4392967
20
2.4
20
89
7
69
13
8
0
78
0.97
4394895--4394924
15
2.0
15
93
0
51
50
6
23
20
1.71
4398034--4398060
5
5.4
5
100
0
54
81
0
0
18
0.69
4398020--4398067
10
5.0
9
85
7
51
79
2
0
18
0.84
4398032--4398067
15
2.4
14
86
13
54
83
0
0
16
0.65
4398173--4398503
127
2.6
130
88
4
472
34
9
5
50
1.59
4398311--4398449
59
2.4
59
80
5
160
32
8
5
53
1.55
4398173--4398586
132
3.2
129
83
5
467
36
9
5
48
1.58
4399490--4399514
3
8.3
3
100
0
50
68
0
0
32
0.90
4403993--4404290
147
2.0
148
86
1
409
22
23
10
43
1.83
4407704--4407754
25
2.0
26
96
3
95
47
3
1
47
1.32
4407706--4407766
25
2.4
25
86
5
79
44
4
3
47
1.41
4409916--4409950
2
17.5
2
100
0
70
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4422148--4422341
101
1.9
101
87
0
280
44
6
5
43
1.52
4422383--4422418
2
18.0
2
100
0
72
50
0
0
50
1.00
4422743--4422776
14
2.3
15
90
5
52
26
20
0
52
1.46
4425184--4425248
16
3.8
17
75
17
55
44
1
0
53
1.09
4425267--4425320
27
1.9
28
85
14
76
55
0
0
44
0.99
4430547--4430585
20
2.0
20
84
0
51
0
30
7
61
1.24
4435468--4435522
20
2.9
18
79
12
58
34
0
1
63
1.05
4441364--4441398
2
17.5
2
87
0
52
42
0
5
51
1.25
4452131--4452210
40
2.0
40
85
9
110
36
6
31
26
1.81
4467771--4467800
14
2.1
14
93
0
51
76
0
0
23
0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100