genome.fa.s113.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  71  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15956324--15956375	26	2.0	26	88	0	77	28	26	19	25	1.98
15956473--15957168	158	4.4	158	75	5	578	19	26	30	23	1.98
15957141--15957193	26	2.0	26	85	7	72	30	24	16	28	1.97
15958039--15958091	26	2.0	26	92	7	90	30	24	16	28	1.97
15959070--15959125	26	2.2	26	90	6	87	26	25	19	28	1.99
15959565--15959595	11	2.8	11	95	0	53	16	29	38	16	1.90
15960550--15960602	26	2.0	26	89	7	81	26	22	20	30	1.98
15961761--15961810	26	1.9	26	88	8	75	32	22	16	30	1.95
15961955--15962007	26	2.0	26	92	0	88	28	26	20	24	1.99
15963505--15963583	26	3.0	26	88	3	115	26	22	20	30	1.98
15964224--15964279	26	2.2	26	90	0	85	30	28	17	23	1.97
15969819--15969871	26	2.0	26	89	7	81	28	24	18	28	1.98
15971117--15971186	25	2.7	25	86	4	95	30	28	17	24	1.97
15972382--15972434	26	2.0	26	89	7	81	26	22	20	30	1.98
15972923--15972975	26	2.0	26	85	7	72	26	22	20	30	1.98
15973646--15973696	26	2.0	26	88	7	77	27	25	19	27	1.99
15973830--15973882	26	2.0	26	92	7	90	26	24	20	28	1.99
15974029--15974078	26	1.9	26	91	0	82	30	28	14	28	1.95
15974210--15974262	26	2.0	26	85	7	72	30	26	16	26	1.97
15973620--15974355	183	3.9	184	77	8	513	22	25	27	24	2.00
15973599--15974421	184	4.4	185	75	10	681	21	25	27	25	1.99
15974712--15974764	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15975380--15975431	26	2.0	27	96	3	97	25	26	19	28	1.98
15975585--15975637	26	2.0	26	92	0	88	26	26	20	26	1.99
15977006--15977058	26	2.0	26	88	0	79	28	26	18	26	1.98
15974184--15977404	710	4.6	702	76	7	2728	22	25	27	24	2.00
15977479--15977575	26	3.7	26	89	5	151	27	23	17	30	1.97
15977549--15978366	158	5.2	158	76	6	674	20	26	30	22	1.98
15977557--15978367	316	2.6	316	83	3	963	20	26	30	22	1.98
15978535--15978587	26	2.0	26	92	0	88	26	26	20	26	1.99
15978182--15978745	183	3.0	183	74	9	544	20	24	29	25	1.99
15980408--15980460	26	2.0	26	92	0	88	33	24	15	26	1.95
15982128--15982180	26	2.0	26	85	7	72	32	22	15	30	1.94
15983352--15983401	26	1.9	26	88	8	75	28	22	20	30	1.98
15984025--15984077	26	2.0	26	89	7	81	26	24	18	30	1.98
15983940--15984416	195	2.5	195	80	8	502	19	25	30	24	1.98
15984538--15984905	158	2.3	158	84	2	463	20	23	29	26	1.98
15984879--15984931	26	2.0	26	89	7	81	26	22	20	30	1.98
15984721--15985138	184	2.3	184	81	3	491	20	23	28	26	1.99
15985719--15985771	26	2.0	26	92	0	88	30	26	16	26	1.97
15986860--15986912	26	2.0	26	96	0	97	26	28	20	24	1.99
15986987--15987388	158	2.5	157	79	6	436	18	26	29	25	1.98
15987360--15987411	26	2.0	25	92	3	86	26	21	21	30	1.98
15987568--15987618	26	2.0	26	88	0	75	25	27	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987752--15987802	26	2.0	26	84	7	68	29	25	13	31	1.94
15989508--15989560	26	2.0	26	88	0	79	30	24	16	28	1.97
15990244--15991053	159	5.2	159	74	11	625	20	27	29	23	1.98
15990244--15991051	305	2.6	314	81	7	935	19	27	29	23	1.98
15991024--15991076	26	2.0	26	92	7	90	26	24	20	28	1.99
15991908--15991960	26	2.0	26	89	7	81	26	18	22	32	1.97
15992421--15992473	26	2.0	26	85	7	72	28	22	18	30	1.98
15993572--15993624	26	2.0	26	92	0	88	28	28	18	24	1.98
15993598--15994098	159	3.2	157	74	5	461	21	26	27	23	1.99
15994072--15994124	26	2.0	26	85	0	70	24	22	18	33	1.97
15994346--15994397	26	2.0	26	96	0	95	30	28	15	25	1.96
15994530--15994582	26	2.0	26	92	0	88	26	26	22	24	2.00
15994273--15994909	184	3.5	182	83	1	743	20	25	28	25	1.99
15994714--15994766	26	2.0	26	96	0	97	26	28	20	24	1.99
15995057--15995109	26	2.0	26	92	7	90	30	24	16	28	1.97
15995783--15995835	26	2.0	26	92	0	88	28	28	18	24	1.98
15995809--15996310	158	3.2	158	77	5	537	20	25	29	23	1.99
15996284--15996335	26	2.0	26	88	0	77	28	25	15	30	1.96
15996218--15997033	343	2.3	343	79	6	881	19	27	28	24	1.99
15996639--15996691	26	2.0	26	85	7	72	32	28	15	24	1.95
15996982--15997034	26	2.0	26	89	7	81	28	24	18	28	1.98
15997708--15997760	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15997734--15998235	158	3.2	157	76	5	490	20	25	29	24	1.99
15998209--15998268	26	2.4	26	86	5	88	31	18	18	31	1.95
15998907--15998959	26	2.0	26	92	7	90	26	24	20	28	1.99
15999627--15999679	26	2.0	26	88	0	79	30	26	18	24	1.98
16000128--16000180	26	2.0	26	92	7	90	26	22	20	30	1.98
16001391--16001444	26	2.0	26	85	3	72	27	25	20	25	1.99
16001500--16002225	158	4.5	158	77	5	607	19	27	30	23	1.98
16001604--16002225	328	1.9	329	81	3	770	19	27	30	22	1.98
16002199--16002251	26	2.0	26	85	7	72	26	24	18	30	1.98
16002613--16002665	26	2.0	26	85	7	72	30	24	16	28	1.97
16002346--16002766	196	2.1	196	82	3	508	22	28	26	23	1.99
16002822--16002873	25	2.0	26	88	3	79	28	25	19	26	1.98
16003728--16003779	26	2.0	26	92	7	88	26	26	19	26	1.99
16004166--16004218	26	2.0	26	92	7	90	26	24	20	28	1.99
16005732--16005784	26	2.0	26	85	7	72	32	26	15	26	1.95
16006955--16007007	26	2.0	26	85	7	72	28	24	18	28	1.98
16007179--16007229	26	2.0	26	92	0	84	27	25	19	27	1.99
16009696--16009748	26	2.0	26	89	7	81	28	20	18	32	1.97
16010197--16010249	26	2.0	26	89	7	81	28	22	18	30	1.98
16010397--16010446	26	1.9	26	91	0	82	28	24	18	30	1.97
16010461--16010764	159	1.9	158	83	6	391	17	28	32	21	1.96
16010737--16010789	26	2.0	26	89	7	81	24	24	22	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16011458--16011510	26	2.0	26	88	0	79	30	22	18	28	1.98
16010711--16012244	733	2.1	722	88	3	2278	26	22	23	27	1.99
16012192--16012270	26	3.0	26	86	0	113	25	26	22	25	2.00
16012426--16012734	159	1.9	159	83	5	392	17	25	32	24	1.97
16013520--16013918	158	2.5	158	82	5	450	20	25	30	24	1.99
16014201--16014253	26	2.0	26	85	0	70	32	22	18	26	1.97
16014702--16014754	26	2.0	26	85	7	72	28	22	18	30	1.98
16015240--16015600	159	2.3	160	78	8	394	20	27	29	22	1.98
16015572--16015623	26	2.0	26	92	7	88	26	21	19	32	1.97
16016219--16016797	159	3.6	159	76	6	546	18	26	29	25	1.98
16016769--16016821	26	2.0	26	85	7	72	28	22	18	30	1.98
16016977--16017029	26	2.0	26	86	13	74	28	24	16	30	1.97
16026021--16026073	26	2.0	26	92	0	88	26	26	20	26	1.99
16026047--16026549	158	3.2	159	79	6	547	20	26	29	23	1.99
16026522--16026574	26	2.0	26	89	7	81	28	22	18	30	1.98
16032659--16033085	159	2.7	157	76	3	383	18	27	30	23	1.98
16032585--16033084	157	3.2	157	76	4	495	19	26	30	23	1.98
16033058--16033110	26	2.0	26	89	7	81	28	24	18	28	1.98
16033592--16033968	159	2.4	160	80	4	422	18	25	29	25	1.98
16033940--16033992	26	2.0	26	92	7	90	26	24	20	28	1.99
16034710--16035189	159	3.0	156	76	9	459	18	26	30	24	1.98
16035163--16035215	26	2.0	26	92	7	90	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16036239--16036291	26	2.0	26	92	0	88	28	24	20	26	1.99
16037278--16037330	26	2.0	26	88	0	79	26	28	20	24	1.99
16038114--16038164	26	2.0	26	96	0	93	27	27	19	25	1.99
16038789--16038841	26	2.0	26	92	0	88	28	24	18	28	1.98
16037824--16039321	689	2.2	676	85	3	1938	19	25	29	24	1.99
16039294--16039346	26	2.0	26	89	7	81	28	24	18	28	1.98
16040366--16040714	183	1.9	183	80	3	407	21	23	29	25	1.99
16041092--16042240	343	3.4	339	82	5	1317	21	26	28	23	1.99
16041528--16041580	26	2.0	26	85	0	70	30	24	18	26	1.98
16041868--16041923	26	2.2	26	86	0	76	32	25	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100