genome.fa.s113.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  29  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8256219--8256555	58	5.7	57	84	8	410	45	6	12	35	1.69
8256219--8256557	119	2.9	114	83	7	437	44	7	12	35	1.70
8256468--8256555	27	3.1	27	64	17	63	42	5	15	36	1.71
8260452--8260490	20	2.0	20	90	10	62	76	0	12	10	1.01
8261760--8261932	42	4.1	41	85	5	206	23	15	22	39	1.91
8262129--8262241	6	18.7	6	74	17	74	20	2	1	75	1.02
8262128--8262240	43	2.6	41	81	10	111	21	2	1	74	1.03
8262105--8262244	47	2.9	48	70	20	121	20	4	2	72	1.12
8262278--8262308	3	10.7	3	93	6	55	29	0	0	70	0.87
8262495--8262519	12	2.1	12	100	0	50	40	16	16	28	1.89
8263225--8263284	6	9.5	6	80	10	66	13	3	1	81	0.89
8263233--8263288	16	3.5	15	76	13	58	14	1	1	82	0.84
8263212--8263285	33	2.2	33	79	15	82	17	2	1	78	0.94
8263233--8263296	33	2.0	32	84	6	85	14	6	1	78	1.02
8263333--8263609	58	4.7	59	85	8	368	45	6	14	34	1.69
8268395--8268437	3	14.0	3	95	4	77	67	0	0	32	0.91
8274859--8274883	2	12.5	2	100	0	50	48	0	0	52	1.00
8275519--8275613	3	31.3	3	87	8	131	32	2	2	63	1.18
8276391--8276437	20	2.3	20	88	0	76	21	42	19	17	1.89
8276646--8276707	15	3.9	15	75	14	54	50	8	0	41	1.32
8276652--8276707	16	3.5	16	78	7	51	55	7	0	37	1.27
8280534--8280606	36	2.0	37	84	7	96	78	1	13	6	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8280556--8280627	8	9.2	8	78	14	53	76	1	15	6	1.06
8280534--8280634	38	2.7	37	77	10	98	75	0	16	6	1.07
8281691--8282009	69	4.7	69	80	4	324	25	19	14	41	1.89
8281985--8282026	17	2.5	17	100	0	84	14	23	14	47	1.80
8282035--8282097	17	3.6	17	85	6	74	25	19	12	42	1.86
8281916--8282166	87	2.9	87	84	2	301	25	20	12	41	1.88
8282537--8282607	3	24.3	3	88	11	112	32	0	0	67	0.91
8283512--8283583	30	2.7	25	72	24	67	12	5	1	80	0.94
8283731--8283773	16	2.8	16	86	6	54	48	9	0	41	1.35
8284810--8284888	2	39.0	2	92	7	133	1	49	1	48	1.17
8287180--8287253	26	2.9	25	77	15	71	44	5	8	41	1.57
8290911--8290935	12	2.1	12	100	0	50	8	8	0	84	0.79
8291571--8291931	128	2.8	128	96	0	659	44	15	16	23	1.86
8292619--8292653	12	2.9	12	95	0	61	51	0	0	48	1.00
8293162--8293199	19	2.0	19	85	10	51	71	5	2	21	1.19
8293633--8293681	23	2.1	24	82	17	59	44	0	4	51	1.20
8293669--8293732	27	2.4	27	82	7	69	50	1	1	46	1.20
8296655--8296697	21	2.0	21	100	0	86	37	13	23	25	1.92
8299697--8299723	3	9.0	3	100	0	54	66	0	0	33	0.92
8306634--8306661	2	14.0	2	100	0	56	50	0	0	50	1.00
8307480--8307517	20	1.9	20	88	0	58	23	36	18	21	1.95
8307753--8307787	16	2.2	17	90	10	56	48	8	0	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8311302--8311417	54	2.2	53	77	16	123	56	13	12	16	1.67
8311662--8311719	8	7.5	8	74	14	50	81	3	3	12	0.95
8312822--8313292	69	6.8	68	81	3	376	25	18	14	42	1.88
8313165--8313281	34	3.4	33	73	9	92	21	17	13	47	1.82
8313050--8313334	70	4.1	70	85	3	344	26	18	12	42	1.85
8312826--8313334	137	3.7	139	80	6	380	25	18	13	41	1.88
8313701--8313798	3	32.3	3	83	8	119	32	3	3	61	1.27
8314665--8314735	8	8.5	8	73	14	63	14	4	1	80	0.93
8314884--8314919	17	2.2	17	95	5	65	50	8	0	41	1.33
8325982--8326021	21	2.0	20	90	5	62	57	5	5	32	1.42
8327631--8327662	15	2.1	15	100	0	64	40	25	12	21	1.88
8329183--8329213	16	1.9	16	93	0	53	19	0	35	45	1.51
8329172--8329235	30	2.2	29	83	8	76	14	0	35	50	1.43
8329227--8329358	16	8.2	16	70	7	81	21	1	31	46	1.60
8329246--8329391	65	2.2	65	89	2	213	21	2	29	46	1.63
8329301--8329398	16	6.1	16	75	12	76	24	1	27	46	1.59
8329300--8329397	8	12.1	8	65	18	51	23	1	28	46	1.59
8329273--8329411	65	2.1	64	83	6	172	24	3	27	44	1.70
8330850--8330888	7	5.4	7	87	6	60	10	2	2	84	0.81
8330845--8330888	15	3.0	15	90	3	63	11	6	2	79	1.01
8330845--8330888	14	3.1	14	86	3	52	11	6	2	79	1.01
8330909--8330949	3	13.7	3	84	0	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8330904--8330949	9	5.1	9	86	0	56	43	0	0	56	0.99
8331095--8331260	88	1.9	88	85	0	233	40	16	18	23	1.90
8331157--8331815	220	3.0	219	83	2	775	39	18	19	22	1.92
8331181--8331796	329	1.9	330	84	2	835	40	17	18	22	1.91
8331165--8331815	110	5.9	109	80	2	678	40	17	18	23	1.91
8332054--8332165	41	2.7	41	82	8	138	30	15	21	33	1.94
8334488--8334529	17	2.5	17	88	7	59	2	4	2	90	0.60
8334488--8334529	19	2.3	19	87	4	59	2	4	2	90	0.60
8340473--8340498	13	2.0	13	100	0	52	15	0	30	53	1.42
8340617--8340743	33	3.9	32	82	10	132	21	0	28	49	1.55
8340547--8340746	16	12.6	16	71	16	105	22	1	29	48	1.57
8340591--8340744	65	2.4	64	82	5	175	22	1	27	48	1.59
8340665--8340745	9	9.9	9	69	20	54	20	1	30	46	1.59
8344934--8344979	22	2.1	21	84	4	56	41	10	4	43	1.59
8345178--8345226	25	2.0	25	84	8	64	36	12	10	40	1.77
8347914--8348052	70	2.0	69	95	1	251	28	23	12	35	1.91
8354145--8354183	19	2.0	21	85	10	55	33	0	0	66	0.92
8354200--8354260	22	2.8	22	87	9	81	47	0	0	52	1.00
8359780--8359845	28	2.3	29	85	12	84	42	1	0	56	1.08
8359780--8359821	15	3.0	14	76	10	50	40	0	0	59	0.97
8360702--8360752	21	2.5	21	73	17	54	43	1	3	50	1.31
8361004--8361054	23	2.3	21	87	12	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8362879--8362940	12	5.1	12	74	16	56	41	0	4	53	1.22
8366724--8366753	13	2.3	13	94	0	51	63	0	3	33	1.11
8369375--8369430	24	2.4	24	84	3	78	55	0	3	41	1.17
8371530--8371596	34	2.0	34	90	0	107	47	10	14	26	1.77
8371651--8371691	22	1.9	21	85	5	55	60	12	7	19	1.54
8372490--8372626	60	2.3	59	80	10	147	34	13	8	43	1.74
8372502--8372631	59	2.2	60	83	8	160	36	13	8	41	1.75
8372872--8373100	123	1.8	124	80	9	270	38	12	13	35	1.83
8381241--8381297	18	3.0	20	72	27	61	33	8	10	47	1.69
8381481--8381549	36	2.0	34	85	5	93	39	7	5	47	1.55
8388714--8388743	2	15.0	2	100	0	60	50	0	0	50	1.00
8389531--8389631	25	4.2	25	73	5	82	39	6	32	20	1.79
8395533--8395567	3	11.7	3	93	0	61	28	0	2	68	1.04
8395988--8396016	13	2.3	13	94	5	51	75	0	0	24	0.80
8400411--8400448	18	2.1	18	90	5	58	34	0	0	65	0.93
8400433--8400460	13	2.2	13	100	0	56	32	0	0	67	0.91
8400436--8400469	13	2.5	13	90	4	50	35	2	0	61	1.11
8401071--8401151	36	2.2	36	78	10	85	55	1	4	38	1.29
8408816--8408855	21	2.0	21	85	5	55	42	0	0	57	0.98
8411272--8411427	52	3.0	52	79	7	174	27	21	8	42	1.81
8411448--8411483	11	3.3	11	84	0	54	47	27	0	25	1.52
8415443--8415507	25	2.6	25	75	2	67	46	27	4	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8427371--8427420	20	2.7	18	76	17	57	48	4	8	40	1.51
8427371--8427422	18	2.8	18	80	16	61	48	3	9	38	1.54
8432661--8432690	2	14.5	2	93	6	51	46	0	3	50	1.18
8432762--8432839	17	4.5	17	71	15	61	50	1	1	47	1.17
8432762--8432841	25	3.2	25	70	12	65	51	1	1	46	1.17
8432874--8432924	26	2.0	26	84	7	68	37	0	3	58	1.16
8432891--8432922	9	3.8	9	84	16	50	37	0	0	62	0.95
8432894--8432927	16	2.1	16	94	0	59	32	0	0	67	0.91
8432890--8432932	16	2.8	15	80	13	52	39	0	0	60	0.97
8438924--8438991	4	17.0	4	90	0	64	42	4	7	45	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100