genome.fa.s113.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  6  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1248238--1248294	25	2.3	25	87	0	78	22	7	15	54	1.65
1248263--1248585	89	3.7	85	80	8	310	26	13	16	44	1.84
1248263--1248606	44	7.9	44	78	5	286	25	13	17	43	1.85
1248796--1248860	7	8.6	7	75	20	51	30	1	0	67	1.00
1248804--1248884	35	2.4	34	84	12	112	29	2	1	66	1.12
1249579--1249626	6	8.5	6	93	6	75	16	0	0	83	0.65
1249579--1249626	11	4.3	11	85	15	71	16	0	0	83	0.65
1249634--1249814	58	3.1	58	85	6	260	44	4	9	40	1.59
1252618--1252653	2	18.0	2	100	0	72	50	0	50	0	1.00
1256353--1256383	2	15.5	2	100	0	62	51	0	0	48	1.00
1256435--1256460	2	13.0	2	100	0	52	50	0	0	50	1.00
1265232--1265299	13	5.7	13	79	13	67	54	0	0	45	0.99
1265244--1265274	10	3.1	10	90	0	53	51	0	0	48	1.00
1265349--1265377	6	5.0	6	91	8	51	51	0	0	48	1.00
1274666--1274715	26	2.0	26	81	14	61	62	4	0	34	1.14
1275623--1275682	20	2.8	20	75	14	59	53	1	0	45	1.10
1275667--1275717	8	6.4	8	76	14	52	64	0	0	35	0.94
1280888--1280930	22	2.0	22	85	0	59	76	4	0	18	0.95
1289327--1289392	28	2.2	30	79	17	84	51	4	10	33	1.57
1289338--1289391	28	2.0	28	92	3	92	50	5	11	33	1.61
1294893--1294960	28	2.4	29	78	9	79	51	0	2	45	1.16
1299542--1299596	27	1.9	30	85	10	80	12	5	7	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1300772--1301074	116	2.7	112	80	10	303	53	7	8	30	1.61
1302097--1302199	50	2.1	49	88	1	152	26	19	5	48	1.71
1306240--1306413	42	4.1	42	87	1	242	22	9	20	46	1.80
1306242--1306413	84	2.0	84	93	0	290	22	9	20	46	1.80
1307063--1307100	20	1.9	20	88	0	58	18	15	13	52	1.74
1307750--1307816	34	2.0	34	90	0	107	40	10	11	37	1.77
1307903--1308174	108	2.6	106	83	6	345	55	6	10	27	1.58
1308755--1308786	2	16.0	2	100	0	64	50	0	0	50	1.00
1310402--1310455	22	2.5	22	75	0	54	48	1	1	48	1.23
1310858--1310900	18	2.4	18	80	7	52	41	0	0	58	0.98
1312376--1312428	24	2.2	24	80	6	63	22	7	3	66	1.34
1316910--1316944	18	1.9	18	88	0	52	25	0	5	68	1.11
1324904--1324962	15	4.0	15	72	10	50	61	8	0	30	1.26
1324790--1325275	262	1.8	262	84	2	668	45	8	5	41	1.57
1326016--1326065	19	2.6	20	78	9	59	34	2	6	58	1.34
1326080--1326153	32	2.3	32	86	2	96	33	6	14	44	1.72
1333815--1333878	24	2.8	24	83	4	78	43	6	0	50	1.27
1333985--1334042	28	2.1	28	83	6	73	56	6	12	24	1.59
1339935--1340257	161	2.0	161	99	0	637	32	18	15	33	1.92
1343496--1343540	22	2.0	22	82	0	54	42	0	4	53	1.21
1343501--1343567	27	2.4	27	82	12	73	38	1	5	53	1.34
1343586--1343627	21	2.0	21	90	9	68	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346968--1347040	31	2.2	31	85	11	92	36	1	2	58	1.21
1359910--1359973	24	2.8	22	75	11	65	32	0	0	67	0.91
1359939--1359971	12	2.8	12	90	4	50	24	0	0	75	0.80
1366292--1366332	18	2.3	19	76	24	52	63	2	0	34	1.08
1380075--1380108	12	2.8	13	86	13	54	5	50	0	44	1.26
1385367--1385416	19	2.6	19	81	15	59	40	0	8	52	1.31
1385503--1385550	16	2.9	16	84	3	60	64	0	2	33	1.05
1386707--1386770	5	12.8	5	75	15	53	76	0	4	18	0.95
1386712--1386769	30	2.0	29	86	3	80	75	0	5	18	0.98
1386792--1386861	3	23.3	3	77	11	72	67	4	1	27	1.18
1387708--1387827	21	5.7	21	77	6	91	65	1	5	26	1.24
1387708--1387794	42	2.1	41	86	2	120	66	2	6	24	1.28
1387708--1387827	22	5.7	21	76	12	104	65	1	5	26	1.24
1387721--1387827	43	2.5	42	84	4	135	64	1	6	27	1.28
1387768--1387871	37	2.9	37	83	8	108	60	1	3	33	1.26
1387738--1387843	22	4.9	20	76	13	79	63	2	4	29	1.29
1387934--1387984	24	2.1	24	85	7	68	76	5	0	17	0.98
1388171--1388584	41	9.9	40	80	11	304	38	19	15	26	1.91
1388209--1388585	84	4.5	84	84	6	457	38	19	15	26	1.91
1389546--1389594	10	4.9	10	85	7	64	12	14	0	73	1.10
1389562--1389622	8	7.8	8	85	14	58	9	8	0	81	0.86
1389546--1389594	9	5.0	9	87	9	62	12	14	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389546--1389594	19	2.5	20	90	6	73	12	14	0	73	1.10
1389580--1389622	14	3.2	13	84	12	59	9	6	0	83	0.80
1389561--1389622	9	6.7	9	74	20	56	9	8	0	82	0.85
1400745--1401014	58	4.7	56	82	10	330	38	12	5	44	1.65
1400744--1401014	116	2.3	116	88	6	415	38	12	5	43	1.65
1401107--1401146	3	12.7	3	84	10	53	70	2	0	27	1.01
1401098--1401152	9	6.1	9	78	14	51	70	1	0	27	0.97
1401103--1401147	7	6.9	7	89	5	60	71	2	0	26	0.98
1401976--1402094	21	5.7	20	72	9	78	63	1	6	27	1.29
1402038--1402145	39	2.9	38	82	13	109	60	3	3	32	1.32
1402073--1402255	4	46.5	4	67	16	64	67	4	2	26	1.21
1402081--1402174	39	2.4	38	80	8	109	63	4	2	29	1.25
1402158--1402255	27	3.6	27	71	24	80	72	4	1	22	1.08
1402198--1402255	6	10.7	6	83	14	65	74	1	0	24	0.92
1402150--1402252	23	4.8	21	78	18	88	73	3	0	21	1.05
1403355--1403392	19	2.0	19	85	10	51	60	0	28	10	1.30
1410228--1410258	5	6.2	5	100	0	62	61	0	38	0	0.96
1426176--1426241	32	2.1	32	97	0	123	24	12	4	59	1.52
1437058--1437515	230	2.0	230	97	0	864	34	15	15	33	1.90
1438725--1438752	8	3.5	8	100	0	56	35	10	28	25	1.89
1459483--1459508	6	4.3	6	100	0	52	69	0	0	30	0.89
1465757--1465825	30	2.3	30	100	0	138	36	27	10	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471651--1471691	11	3.7	11	86	0	55	26	0	21	51	1.48
1471716--1471872	52	3.0	52	83	1	136	43	8	19	28	1.80
1475362--1475395	2	17.0	2	100	0	68	50	0	0	50	1.00
1476699--1476767	34	2.0	35	86	8	97	40	0	0	59	0.97
1476740--1476805	23	2.9	23	72	14	66	45	1	0	53	1.09
1483396--1483428	4	8.2	4	100	0	66	24	0	0	75	0.80
1490210--1490239	15	2.0	15	93	0	51	40	10	13	36	1.78
1494292--1494328	2	18.5	2	94	0	65	45	0	2	51	1.15
1498872--1498912	2	20.5	2	100	0	82	0	48	0	51	1.00
1498912--1498942	2	15.5	2	100	0	62	48	0	0	51	1.00
1499288--1499321	2	17.5	2	87	6	52	50	2	0	47	1.16
1499367--1499445	21	3.4	23	84	12	99	44	3	6	45	1.47
1499701--1499773	30	2.5	30	84	2	94	46	1	8	43	1.42
1503867--1503930	26	2.4	27	80	10	71	48	0	0	51	1.00
1505430--1505455	2	13.0	2	100	0	52	50	0	50	0	1.00
1509455--1509479	13	1.9	13	100	0	50	40	28	16	16	1.89
1510583--1510621	20	2.0	20	85	10	53	66	2	2	28	1.18
1522965--1523021	18	3.4	18	65	30	54	15	38	1	43	1.57
1522958--1523026	31	2.3	31	97	2	131	15	33	4	46	1.66
1528457--1528492	16	2.3	16	90	4	56	47	2	0	50	1.15
1544443--1544488	20	2.3	20	84	0	65	47	0	0	52	1.00
1544598--1544636	17	2.2	18	86	13	55	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544645--1544702	28	2.1	29	84	12	77	55	1	0	43	1.10
1545703--1545757	24	2.3	24	80	20	62	47	0	0	52	1.00
1545723--1545772	17	2.8	18	81	6	57	46	0	0	54	1.00
1545711--1545799	45	2.0	45	80	8	101	47	0	0	52	1.00
1545809--1545880	29	2.7	26	74	17	67	58	0	0	41	0.98
1560159--1560204	24	1.9	24	95	0	83	52	6	0	41	1.27
1567918--1567950	13	2.4	14	95	5	59	45	0	0	54	0.99
1570642--1570677	18	2.0	18	88	0	54	88	0	8	2	0.59
1582450--1582493	23	1.9	23	85	0	61	61	2	2	34	1.21
1595978--1596008	2	15.5	2	100	0	62	51	48	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100