genome.fa.s113.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  94  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18626636--18626669	17	1.9	18	88	5	52	41	0	0	58	0.98
18626634--18626699	32	2.0	33	82	8	82	36	3	0	60	1.12
18627640--18627679	12	3.4	12	89	3	55	35	7	10	47	1.65
18631369--18631404	15	2.3	16	90	4	56	13	0	63	22	1.29
18631672--18631710	19	2.1	19	85	0	51	12	0	12	74	1.08
18636760--18636787	2	14.0	2	100	0	56	50	0	0	50	1.00
18639088--18639116	12	2.3	13	94	5	51	44	0	0	55	0.99
18639408--18639434	1	27.0	1	100	0	54	0	0	0	100	0.00
18640342--18640391	21	2.4	21	82	0	64	34	2	22	42	1.65
18640535--18640637	50	2.0	54	83	11	135	50	1	1	45	1.24
18640535--18640639	49	2.1	52	82	8	128	50	1	1	45	1.23
18640674--18640719	8	5.6	8	92	5	65	80	0	0	19	0.71
18640674--18640719	17	2.8	16	87	6	65	80	0	0	19	0.71
18643312--18643356	16	2.8	16	82	0	63	53	6	13	26	1.64
18650344--18650381	19	2.0	19	85	10	51	39	2	23	34	1.69
18650598--18650641	23	1.9	23	81	9	54	4	20	4	70	1.23
18668474--18668499	8	3.2	8	100	0	52	11	0	0	88	0.52
18670743--18670835	40	2.3	40	83	1	105	23	9	17	49	1.76
18670768--18670837	20	3.5	20	77	14	90	22	8	17	51	1.72
18671812--18672092	58	4.8	58	82	7	325	38	14	7	39	1.75
18671850--18672084	120	1.9	122	88	3	359	38	13	8	40	1.74
18673871--18673900	13	2.3	13	94	0	51	66	0	6	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18674065--18674258	105	1.8	105	94	2	345	30	15	14	38	1.88
18674053--18674268	105	2.1	103	89	3	335	29	14	13	42	1.84
18674193--18674351	82	2.0	82	88	3	241	36	16	15	31	1.90
18674262--18674639	99	3.8	96	84	8	438	33	16	12	37	1.86
18674085--18674635	188	2.9	192	84	8	723	33	16	13	36	1.88
18674275--18674639	97	3.6	100	87	5	488	34	16	13	35	1.88
18674625--18674922	41	7.1	42	75	12	186	38	19	14	27	1.91
18674275--18674667	203	2.0	200	80	5	454	35	16	12	35	1.87
18674629--18674851	83	2.7	82	80	8	236	40	19	14	26	1.89
18683781--18683814	17	2.0	17	94	0	59	23	2	41	32	1.69
18686038--18686108	20	3.5	20	77	11	90	22	8	16	52	1.71
18686038--18686121	41	2.0	41	90	0	132	22	9	16	51	1.73
18687085--18687365	58	4.8	58	82	7	325	38	14	7	39	1.75
18687123--18687357	120	1.9	122	88	3	359	38	13	8	40	1.74
18689144--18689180	12	3.2	12	85	7	51	70	0	8	21	1.13
18689324--18689904	97	5.9	100	69	15	351	32	15	13	38	1.86
18689454--18689621	82	2.1	82	89	3	259	35	17	16	31	1.92
18689536--18689908	97	3.7	102	87	6	519	33	16	13	36	1.87
18689351--18689904	187	2.9	186	85	7	724	33	16	13	36	1.88
18689898--18690121	83	2.7	84	80	8	258	40	19	14	26	1.89
18689894--18690190	42	7.1	41	77	9	244	38	19	14	27	1.91
18689898--18690190	83	3.5	84	78	10	226	39	19	14	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18696639--18696674	18	2.0	18	94	0	63	44	5	25	25	1.75
18700147--18700598	86	5.2	86	77	4	369	23	18	13	45	1.84
18701281--18701315	12	2.8	13	86	8	54	22	5	17	54	1.64
18701486--18701521	17	2.1	17	94	0	63	50	13	11	25	1.75
18701807--18701852	4	11.8	4	81	4	58	21	4	2	71	1.14
18701919--18702375	60	7.8	57	75	12	383	45	7	9	38	1.63
18702225--18702375	57	2.6	57	80	5	153	49	6	10	33	1.64
18701934--18702392	118	3.9	116	77	11	318	45	7	8	37	1.64
18703788--18703922	19	7.3	18	70	15	71	14	3	36	45	1.63
18703866--18703959	39	2.5	37	83	13	106	14	2	36	46	1.57
18703891--18703960	20	3.7	18	75	19	70	15	2	34	47	1.61
18708976--18709017	20	2.1	20	100	0	84	19	4	21	54	1.62
18711662--18712352	144	4.8	142	74	9	453	42	11	12	33	1.78
18711805--18712362	144	3.9	143	76	5	502	41	11	12	33	1.80
18711806--18712327	289	1.8	289	79	5	624	43	11	13	32	1.79
18713020--18713047	2	14.0	2	100	0	56	50	0	0	50	1.00
18714807--18715128	159	2.0	160	90	1	513	33	14	15	36	1.88
18715115--18715242	66	1.9	66	90	3	204	32	21	10	35	1.88
18718687--18718725	16	2.4	17	95	4	71	43	0	0	56	0.99
18718736--18718778	15	3.0	14	83	6	50	67	2	9	20	1.30
18720288--18720332	2	22.5	2	86	0	63	46	0	4	48	1.22
18720780--18720846	28	2.4	27	82	7	89	47	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18720829--18720878	15	3.3	15	85	2	64	52	2	0	46	1.12
18721551--18721596	18	2.7	18	83	6	60	67	2	4	26	1.21
18722091--18722164	30	2.5	31	87	8	102	41	9	0	48	1.35
18722304--18722338	18	2.0	18	88	5	54	51	0	5	42	1.25
18730082--18730117	18	1.9	19	88	5	56	44	11	8	36	1.70
18731390--18731789	146	2.7	144	80	5	374	36	12	8	42	1.73
18731537--18731800	145	1.8	145	84	4	363	37	11	8	41	1.73
18742966--18743270	41	7.4	40	74	9	240	38	18	10	32	1.85
18742980--18743263	42	6.9	42	75	12	207	38	19	10	31	1.85
18742966--18743270	123	2.5	123	81	6	336	38	18	10	32	1.85
18744024--18744190	51	3.3	52	78	8	207	36	13	12	37	1.82
18744016--18744198	101	1.8	101	90	0	294	37	14	13	35	1.85
18744173--18744617	102	4.3	104	82	7	500	37	14	13	34	1.86
18744173--18744549	206	1.8	206	88	1	576	36	14	14	34	1.86
18744587--18744664	37	2.1	37	90	0	120	30	14	15	39	1.87
18745157--18745542	141	2.7	139	78	9	354	35	14	8	41	1.76
18751420--18751471	13	4.0	13	82	7	61	48	0	1	50	1.12
18751422--18751487	27	2.4	28	84	7	89	48	0	1	50	1.10
18751548--18751654	29	3.5	29	80	11	99	44	0	2	51	1.22
18756197--18756238	3	14.0	3	100	0	84	33	0	0	66	0.92
18757851--18757911	25	2.3	27	80	5	72	37	6	16	39	1.75
18758081--18758113	11	3.0	11	86	13	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18759328--18759370	16	2.5	18	88	7	63	81	2	2	13	0.89
18760158--18760222	16	3.9	17	76	8	53	23	18	10	47	1.79
18764677--18764728	15	3.4	15	78	5	68	53	3	9	32	1.51
18764677--18764737	16	3.9	15	78	6	68	52	3	11	32	1.54
18767515--18767648	61	2.2	58	82	10	171	49	2	9	38	1.51
18767542--18767753	62	3.4	61	78	12	220	45	5	11	37	1.64
18771710--18771766	15	3.7	15	73	19	55	80	1	8	8	0.97
18771714--18771777	24	2.7	23	85	9	85	78	1	9	10	1.04
18771714--18771782	23	3.0	22	81	10	75	76	1	8	13	1.07
18773470--18773784	41	7.5	42	80	5	293	26	10	17	45	1.80
18773470--18773784	82	3.8	83	79	5	323	26	10	17	45	1.80
18775768--18775993	61	3.7	60	82	5	253	49	5	9	35	1.59
18776123--18776806	369	1.9	368	83	2	890	40	13	12	34	1.82
18777190--18777239	22	2.3	22	82	0	64	36	8	4	52	1.50
18780707--18780934	64	3.6	64	87	3	325	35	8	16	39	1.78
18787084--18787166	43	1.9	43	92	0	139	34	10	15	38	1.83
18788879--18788925	24	2.0	24	83	8	60	55	0	2	42	1.12
18789016--18789138	55	2.2	55	82	2	140	46	10	13	30	1.76
18790970--18791044	31	2.4	29	80	10	78	52	5	4	38	1.43
18793153--18793211	32	1.9	31	86	6	84	5	28	3	62	1.32
18796204--18796264	17	3.5	17	70	10	52	26	1	4	67	1.20
18798104--18798148	22	2.0	22	86	0	63	46	20	13	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18799111--18799165	26	2.1	26	82	3	65	32	27	5	34	1.80
18805093--18805150	30	1.9	30	89	0	89	41	5	1	51	1.34
18805616--18805659	20	2.2	20	96	4	81	52	0	0	47	1.00
18805652--18805700	6	8.7	6	78	17	52	67	0	0	32	0.91
18805651--18805706	24	2.4	24	88	11	89	66	0	0	33	0.92
18805671--18805710	20	2.0	20	85	0	53	67	0	0	32	0.91
18805651--18805714	12	5.4	12	77	20	64	65	0	0	34	0.93
18809228--18809304	13	5.7	13	71	14	57	75	3	7	12	1.16
18809732--18809774	19	2.3	19	87	0	59	72	6	2	18	1.19
18810458--18810501	17	2.6	17	81	0	52	40	9	11	38	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100