genome.fa.s113.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  91  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18114943--18115023	18	4.5	18	67	23	55	59	1	0	39	1.05
18116458--18116518	32	1.9	32	86	0	86	44	18	9	27	1.81
18116675--18116736	28	2.2	28	85	5	81	17	20	24	37	1.94
18116815--18116861	11	4.3	11	83	8	51	29	0	0	70	0.88
18118448--18118575	16	8.7	15	65	26	53	47	29	0	21	1.56
18118477--18118580	28	3.7	28	85	6	131	46	29	0	23	1.59
18125649--18125721	11	6.1	11	80	15	74	0	15	1	83	0.71
18125647--18125707	17	3.3	19	84	8	74	0	11	1	86	0.63
18125647--18125721	37	2.0	37	89	0	114	0	14	1	84	0.70
18125647--18125707	1	61.0	1	73	0	50	0	11	1	86	0.63
18133356--18133381	3	8.7	3	100	0	52	69	0	0	30	0.89
18138793--18138863	16	4.9	15	67	19	51	47	28	1	22	1.59
18138780--18138868	28	3.2	28	84	6	110	43	31	1	23	1.61
18138795--18138952	30	5.3	30	75	4	115	48	27	1	21	1.60
18138898--18139030	14	9.8	13	66	20	51	50	28	0	20	1.53
18145936--18145999	1	64.0	1	74	0	56	0	12	0	87	0.54
18145939--18146009	16	4.5	16	82	1	81	0	16	0	83	0.66
18145938--18146000	10	6.0	10	85	14	83	0	14	0	85	0.59
18145949--18146017	30	2.3	30	80	10	77	0	18	0	81	0.70
18147519--18147549	12	2.6	12	94	0	53	74	3	0	22	0.96
18153499--18153535	16	2.4	16	90	4	58	64	8	27	0	1.21
18159333--18159715	44	8.3	44	78	10	297	27	13	18	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18159339--18159703	101	3.9	92	84	6	382	26	13	19	40	1.88
18161072--18161623	206	2.7	200	83	9	700	43	8	12	35	1.74
18161702--18161996	145	2.0	145	99	0	581	34	14	17	32	1.91
18167294--18167336	23	1.9	22	85	4	59	20	0	27	51	1.48
18167362--18167440	14	5.4	14	72	13	61	16	1	29	53	1.51
18167396--18167438	16	3.0	13	78	21	50	16	0	32	51	1.45
18167396--18167466	30	2.4	30	82	0	79	16	0	30	52	1.45
18167440--18167515	30	2.5	31	82	4	91	21	2	28	47	1.64
18167718--18167761	3	14.7	3	86	9	63	61	0	0	38	0.96
18167718--18167761	19	2.2	20	92	4	72	61	0	0	38	0.96
18168056--18168109	15	3.4	16	83	14	60	72	0	1	25	0.95
18169105--18169147	19	2.3	19	80	8	52	27	0	0	72	0.85
18169514--18169608	38	2.5	39	82	6	122	54	15	20	9	1.68
18169651--18169919	104	2.6	105	80	5	294	47	11	20	20	1.80
18169903--18169972	36	1.9	35	85	5	95	57	7	18	17	1.62
18169800--18170057	141	1.8	140	85	6	360	47	10	23	18	1.79
18169590--18169957	106	3.5	101	72	12	287	49	11	20	18	1.78
18169961--18170114	35	4.4	35	68	13	102	42	9	25	22	1.84
18169919--18170659	104	7.1	104	79	5	600	46	11	21	20	1.81
18169722--18170171	245	1.8	245	84	3	620	46	10	23	19	1.81
18170233--18170412	36	5.1	35	74	7	103	49	13	21	15	1.79
18170081--18170659	211	2.8	209	83	2	653	47	11	20	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18169939--18170588	315	2.1	312	82	4	779	46	11	22	19	1.81
18173621--18173646	3	8.7	3	100	0	52	30	0	0	69	0.89
18174506--18174535	13	2.3	13	94	0	51	13	3	0	83	0.77
18177941--18177974	18	1.9	18	88	5	52	73	2	17	5	1.16
18181262--18181335	1	74.0	1	75	0	58	86	1	12	0	0.63
18181259--18181335	9	8.2	9	76	18	77	85	1	12	0	0.65
18181265--18181335	18	3.8	18	82	10	88	85	1	12	0	0.65
18181263--18181335	27	2.7	26	83	10	94	86	1	12	0	0.64
18181257--18181335	39	2.0	39	90	4	124	84	1	13	0	0.68
18186424--18186469	16	2.8	16	80	3	56	67	4	6	21	1.32
18188301--18188370	14	5.0	13	70	13	50	21	1	25	51	1.56
18188387--18188449	30	2.1	30	90	0	99	23	1	25	49	1.59
18188476--18188500	13	1.9	13	100	0	50	8	4	32	56	1.47
18190371--18190431	32	1.9	32	93	0	104	29	8	19	42	1.80
18193915--18193940	2	13.0	2	100	0	52	0	0	50	50	1.00
18195700--18195787	42	2.1	42	84	0	113	21	4	13	60	1.51
18195789--18195904	42	2.8	42	85	0	151	30	10	12	47	1.74
18195905--18195934	15	2.0	15	93	0	51	30	6	10	53	1.60
18196432--18196487	18	3.3	18	71	19	57	55	7	8	28	1.57
18196432--18196495	32	2.0	32	93	0	110	54	6	9	29	1.57
18199940--18200006	6	11.3	6	76	17	61	2	14	0	82	0.79
18199937--18200006	18	4.0	17	82	14	88	2	14	0	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18199937--18200006	17	4.1	16	82	12	77	2	14	0	82	0.77
18199939--18200011	28	2.5	29	80	10	87	2	16	0	80	0.82
18201511--18201541	12	2.6	12	94	0	53	74	3	0	22	0.96
18202261--18202299	15	2.6	16	84	12	55	82	2	5	10	0.93
18204424--18204466	21	2.0	21	100	0	86	30	23	13	32	1.93
18207517--18207564	15	3.1	16	85	5	55	70	6	22	0	1.09
18211306--18211349	18	2.4	18	96	0	79	45	27	11	15	1.81
18213370--18213785	99	4.4	97	82	7	387	26	12	20	39	1.89
18213365--18213785	44	8.9	45	81	8	355	26	13	20	39	1.89
18213978--18214029	23	2.3	23	87	6	72	0	13	1	84	0.70
18213980--18214044	18	3.6	18	77	10	60	0	18	1	80	0.80
18215008--18215035	11	2.5	11	100	0	56	14	0	7	78	0.95
18215167--18215733	214	2.7	205	86	7	741	42	8	13	34	1.76
18220469--18220516	26	2.0	26	84	12	66	18	2	4	75	1.07
18220937--18220978	17	2.5	17	88	11	68	83	0	9	7	0.81
18221851--18221876	12	2.2	12	100	0	52	76	7	0	15	0.99
18221833--18221858	3	8.7	3	100	0	52	69	0	0	30	0.89
18223352--18223389	20	1.9	20	89	10	60	84	0	7	7	0.79
18225062--18225191	69	1.9	69	85	4	181	16	23	14	45	1.84
18224944--18225525	211	2.8	211	82	4	644	19	22	11	46	1.81
18225142--18225334	36	5.4	36	75	7	110	18	23	12	45	1.83
18225252--18225337	37	2.4	36	74	16	86	17	24	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18224939--18225525	106	5.6	104	79	7	562	19	22	11	46	1.81
18225404--18225666	141	1.9	142	87	4	388	19	23	9	47	1.78
18225249--18225747	245	2.0	246	82	3	612	19	23	10	46	1.81
18225402--18225653	69	3.6	69	74	9	215	19	24	9	46	1.80
18225530--18225877	107	3.3	104	79	5	351	18	21	10	49	1.77
18225860--18225959	38	2.6	39	83	3	130	9	18	19	54	1.69
18227400--18227451	15	3.5	15	80	19	56	26	1	0	71	0.97
18227742--18227773	3	10.7	3	93	0	55	37	0	0	62	0.95
18227999--18228098	30	3.4	28	78	8	92	48	31	2	19	1.60
18228072--18228114	15	2.9	15	78	21	54	48	34	0	16	1.46
18228074--18228149	14	5.3	13	71	18	53	55	27	1	15	1.49
18228072--18228115	16	2.9	15	81	18	56	50	34	0	15	1.45
18228274--18228368	15	6.4	14	68	17	57	52	27	0	20	1.46
18230209--18230296	33	2.7	32	79	11	97	23	34	2	39	1.68
18230325--18230424	42	2.4	42	83	3	121	18	27	6	49	1.70
18230989--18231046	18	3.5	17	71	20	59	27	10	6	55	1.59
18230981--18231044	32	2.0	32	93	0	110	29	9	6	54	1.57
18231543--18231572	15	2.0	15	93	0	51	53	10	6	30	1.60
18231573--18231776	42	4.9	42	79	4	205	51	12	8	26	1.68
18233560--18233587	2	14.0	2	100	0	56	50	50	0	0	1.00
18234904--18234931	13	2.2	13	100	0	56	28	14	7	50	1.69
18237042--18237102	32	1.9	32	90	6	97	44	19	6	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18237552--18237608	29	2.0	28	83	10	71	22	50	14	12	1.75
18239041--18239112	16	4.7	16	69	10	60	45	26	4	23	1.71
18239023--18239127	30	3.5	29	85	5	129	43	29	4	21	1.73
18239057--18239185	30	4.3	30	78	2	109	46	28	4	20	1.70
18239271--18239336	29	2.4	27	80	12	71	53	33	0	13	1.41
18249581--18249746	85	2.0	85	85	0	224	43	14	8	33	1.76
18251664--18251728	12	5.4	12	69	7	51	29	15	16	38	1.90
18251663--18251729	24	2.8	25	86	8	86	28	17	16	37	1.92
18252815--18252857	23	1.9	22	86	13	61	11	9	9	69	1.36
18252865--18252915	26	2.0	25	85	11	68	31	3	5	58	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100