genome.fa.s113.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  5  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931356--931524	7	23.4	7	66	15	69	20	0	31	47	1.55
931363--931575	29	7.3	30	78	10	185	20	1	30	47	1.59
931566--931622	16	3.6	16	92	2	89	22	0	31	45	1.53
931436--931714	135	2.1	131	80	10	300	21	1	32	45	1.59
931504--931696	106	1.8	106	81	6	239	21	1	32	44	1.59
931566--931710	29	4.8	29	78	10	132	21	0	33	44	1.57
931566--931696	16	8.6	16	73	10	71	22	0	33	44	1.53
931642--931710	7	9.4	7	71	14	50	18	1	31	47	1.58
931611--931723	29	3.8	28	78	13	95	21	1	34	42	1.63
931612--931730	58	2.0	58	80	7	134	20	1	33	44	1.61
931992--932037	20	2.3	20	85	7	58	26	2	0	71	0.97
932003--932038	10	3.7	10	88	3	56	22	0	0	77	0.76
932090--932135	3	15.3	3	81	0	56	34	4	2	58	1.30
932087--932143	12	4.7	12	84	2	78	35	7	1	56	1.37
935462--935495	15	2.2	16	94	5	61	64	0	0	35	0.94
935455--935503	15	3.5	14	72	27	50	57	0	2	40	1.10
936584--936641	30	1.9	30	89	6	91	44	1	12	41	1.51
936622--936717	30	3.2	30	81	7	90	40	2	14	42	1.57
936925--936954	2	15.0	2	100	0	60	0	50	0	50	1.00
947905--948212	154	2.0	153	95	0	553	44	18	16	20	1.87
952392--952416	2	12.5	2	100	0	50	52	0	48	0	1.00
954645--954682	19	2.0	19	100	0	76	26	10	10	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959640--959901	141	1.9	141	91	0	434	47	20	12	19	1.82
960686--960733	16	3.0	16	78	0	60	47	0	0	52	1.00
960701--960801	19	5.3	18	69	20	55	48	3	0	47	1.20
961029--961053	10	2.5	10	100	0	50	28	0	0	72	0.86
961194--961310	38	3.1	38	70	18	109	36	9	8	45	1.67
961259--961295	19	1.9	19	88	0	56	32	8	8	51	1.61
961400--961438	17	2.2	18	86	9	53	38	2	0	58	1.12
961391--961441	11	4.5	11	74	13	50	37	5	0	56	1.23
963914--963951	2	19.5	2	83	5	51	42	0	0	57	0.98
963913--963951	19	2.1	19	90	0	60	41	0	0	58	0.98
971353--971393	15	2.8	15	78	17	50	56	0	2	41	1.13
977496--977548	22	2.3	23	81	15	56	56	1	1	39	1.21
979769--979933	36	4.6	36	75	4	143	32	9	23	34	1.86
984733--984779	17	3.1	16	82	14	55	23	6	0	70	1.10
986225--986415	94	2.0	95	90	1	303	41	14	14	30	1.85
988162--988250	44	2.0	44	91	0	142	46	11	19	23	1.82
997382--997425	22	2.0	22	82	8	54	38	2	0	59	1.10
998904--999187	65	4.6	58	74	11	160	38	8	3	50	1.50
998941--999077	58	2.4	56	82	7	150	37	4	2	55	1.35
998966--999256	123	2.4	121	83	8	342	39	7	3	50	1.46
999319--999349	3	10.7	3	93	6	55	67	0	0	32	0.91
999319--999349	14	2.1	14	94	5	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000358--1000595	44	5.4	45	79	9	217	46	17	10	25	1.81
1000496--1000679	43	4.3	43	78	11	173	44	15	9	29	1.79
1000907--1000956	21	2.3	22	82	3	66	38	14	10	38	1.79
1000948--1001217	114	2.4	114	88	1	380	34	15	13	36	1.87
1001279--1001318	21	1.9	21	94	0	71	40	15	5	40	1.68
1001259--1001554	79	3.7	78	88	1	421	33	15	10	40	1.81
1001358--1001397	21	1.9	21	89	0	62	35	12	5	47	1.63
1001442--1001634	21	9.5	20	72	15	130	35	16	9	38	1.81
1001442--1001492	20	2.5	21	90	3	77	33	15	11	39	1.84
1001518--1001618	42	2.4	42	88	0	148	37	15	7	38	1.77
1001515--1001634	63	1.9	62	87	1	177	37	16	6	39	1.75
1002731--1002774	18	2.4	18	85	7	63	6	25	0	68	1.14
1002741--1002805	26	2.5	26	80	2	78	7	16	0	75	1.03
1006794--1007097	58	5.0	57	72	15	245	35	7	5	51	1.53
1006853--1006991	68	2.0	69	81	4	174	36	7	4	51	1.49
1006678--1007129	126	3.6	124	85	8	523	35	7	5	51	1.53
1007164--1007224	4	14.5	4	77	19	54	68	3	1	26	1.14
1007165--1007224	13	4.7	13	82	15	72	68	3	1	26	1.15
1017226--1017251	12	2.2	12	100	0	52	76	7	0	15	0.99
1019012--1019049	17	2.2	17	90	0	58	44	2	0	52	1.14
1025375--1025459	42	2.0	42	100	0	170	18	14	18	48	1.81
1028669--1028698	10	3.0	10	95	0	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031179--1031212	17	1.9	17	94	5	59	79	0	17	2	0.86
1031596--1031634	20	1.9	21	84	5	53	23	12	5	58	1.54
1037448--1037851	204	2.0	202	84	0	529	34	14	13	37	1.85
1049406--1049433	14	2.0	14	100	0	56	28	14	21	35	1.92
1065522--1065642	53	2.3	53	84	2	145	42	12	21	23	1.86
1065522--1065673	54	2.8	54	79	7	132	43	13	20	23	1.86
1066563--1066747	95	2.0	94	90	3	291	45	15	12	25	1.82
1067864--1067893	15	1.9	16	93	6	53	80	0	13	6	0.91
1069768--1069808	20	2.0	20	95	0	73	43	4	21	29	1.73
1072550--1072579	15	1.9	16	93	6	53	6	13	0	80	0.91
1085708--1085746	20	2.0	20	84	0	51	48	0	0	51	1.00
1091945--1092023	37	2.2	37	90	2	124	51	1	18	27	1.54
1096945--1097027	41	2.0	41	97	0	157	42	6	9	42	1.62
1103806--1103838	2	16.5	2	93	0	57	48	3	0	48	1.17
1104561--1104625	32	2.0	32	100	0	130	36	9	15	38	1.79
1105409--1105462	28	1.9	28	84	0	72	50	7	3	38	1.48
1121362--1121437	29	2.7	29	77	4	75	50	1	2	46	1.24
1121511--1121597	29	3.0	29	76	5	77	49	9	0	41	1.35
1132939--1132971	2	16.5	2	100	0	66	0	48	0	51	1.00
1152298--1152324	2	13.5	2	100	0	54	0	48	0	51	1.00
1155988--1156034	6	7.8	6	87	0	67	19	4	59	17	1.53
1158175--1158206	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1166276--1166309	10	3.3	10	88	8	50	32	0	11	55	1.36
1169613--1169637	2	12.5	2	100	0	50	52	0	0	48	1.00
1172142--1172205	3	21.3	3	100	0	128	32	0	32	34	1.58
1172204--1172244	3	13.7	3	100	0	82	65	0	0	34	0.93
1178000--1178047	23	2.0	24	84	11	64	52	10	4	33	1.55
1179108--1179166	31	1.9	31	92	0	100	45	8	0	45	1.33
1183379--1183405	2	13.5	2	100	0	54	51	0	0	48	1.00
1183405--1183453	2	24.5	2	100	0	98	51	0	48	0	1.00
1189038--1189112	29	2.6	29	80	2	87	38	5	1	54	1.31
1192425--1192538	57	2.0	57	96	0	210	29	7	19	43	1.77
1192857--1193054	100	2.0	100	93	4	339	19	15	13	52	1.75
1203931--1203983	5	10.8	5	77	18	58	62	1	0	35	1.06
1203921--1203978	29	2.0	28	83	3	71	60	3	1	34	1.24
1203930--1203989	29	2.0	31	87	9	90	63	1	0	35	1.05
1205959--1205991	2	16.5	2	100	0	66	0	48	0	51	1.00
1213796--1213828	8	4.1	8	96	0	57	48	12	0	39	1.40
1216234--1216306	2	37.0	2	94	2	130	0	47	0	52	1.00
1226385--1226426	14	2.8	15	82	10	50	42	4	0	52	1.22
1226636--1226662	3	9.0	3	100	0	54	66	0	0	33	0.92
1227757--1227796	16	2.5	15	84	11	53	67	0	2	30	1.04
1227757--1227804	18	2.9	16	84	9	53	68	0	2	29	1.01
1227868--1227964	32	3.1	33	78	10	87	48	2	1	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1229685--1229766	43	1.9	43	94	0	146	31	23	18	26	1.97
1235457--1235513	7	7.7	7	76	18	53	31	0	0	68	0.90
1235448--1235533	35	2.4	36	84	9	113	29	1	1	68	1.04
1236280--1236615	58	5.8	58	88	5	434	44	4	12	38	1.61
1236280--1236656	115	3.2	116	85	7	468	44	5	11	37	1.65
1236302--1236651	58	6.1	57	82	8	340	44	5	12	37	1.66
1237349--1237392	24	1.9	23	81	9	54	20	4	6	68	1.31
1237938--1237985	23	2.1	23	100	0	96	33	16	31	18	1.94
1247189--1247232	19	2.2	19	88	8	61	84	0	4	11	0.77
1247189--1247236	24	2.0	25	87	4	71	81	0	6	12	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100