genome.fa.s113.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  2  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107356--107409	27	2.0	28	92	3	92	42	0	7	50	1.30
107353--107415	27	2.3	28	82	15	87	42	0	7	49	1.32
107363--107426	27	2.4	27	84	5	85	40	1	6	51	1.36
108307--108339	16	2.1	16	94	0	57	42	0	3	54	1.15
110412--110476	18	3.7	18	74	15	64	64	1	0	33	1.03
110511--110571	25	2.4	25	75	5	68	62	1	1	34	1.15
110592--110628	11	3.5	11	85	14	51	64	0	0	35	0.94
110589--110641	18	2.8	19	80	11	65	64	0	0	35	0.94
112009--112039	2	15.5	2	93	0	53	48	3	0	48	1.17
112809--112876	26	2.7	26	90	4	104	50	0	0	50	1.00
112899--112940	19	2.2	20	79	12	52	61	0	2	35	1.09
112973--113009	12	3.2	12	78	21	51	43	0	0	56	0.99
112988--113038	18	2.8	18	96	0	93	41	0	1	56	1.10
112970--113031	18	2.9	22	77	22	78	41	0	1	56	1.09
113192--113219	14	2.0	14	100	0	56	42	7	0	50	1.30
116802--117190	200	1.9	199	82	10	481	47	6	10	36	1.63
118471--118514	16	2.7	16	96	3	79	25	20	0	54	1.45
128906--129182	42	6.4	43	85	3	344	25	14	13	46	1.81
128906--129182	131	2.1	127	84	3	347	25	14	13	46	1.81
128906--129206	43	7.0	42	82	6	295	25	14	14	45	1.83
128906--129224	131	2.5	130	81	5	335	25	14	14	46	1.82
130195--130567	201	1.9	201	82	8	472	47	7	10	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130438--130751	173	1.8	169	89	2	441	39	8	14	37	1.77
135649--135698	23	2.2	23	82	7	57	70	8	8	14	1.34
139638--139747	56	2.0	56	88	0	166	34	5	10	49	1.61
139851--139919	27	2.6	27	73	13	70	49	4	0	46	1.21
139851--139926	29	2.8	26	75	13	73	51	3	0	44	1.20
142241--142271	12	2.6	12	94	0	53	25	16	25	32	1.96
144084--144227	72	2.0	72	93	0	243	45	8	9	36	1.67
144355--144384	15	2.0	15	93	0	51	46	6	16	30	1.73
153670--153754	42	2.1	41	87	8	122	31	3	20	44	1.68
163988--164015	14	2.0	14	100	0	56	42	0	0	57	0.99
165425--165496	20	3.3	20	65	20	54	61	15	2	20	1.46
165430--165508	26	3.3	26	69	20	89	59	16	3	20	1.52
165492--165522	11	2.8	11	95	0	53	58	16	9	16	1.63
166459--166699	59	4.1	60	88	5	330	36	10	3	49	1.56
166422--166710	59	4.9	58	83	9	320	36	11	4	47	1.60
169194--169336	17	8.4	17	67	11	60	41	11	13	32	1.81
169215--169356	34	4.2	34	78	4	144	39	11	16	32	1.85
169211--169343	68	2.0	67	82	4	160	42	11	15	30	1.82
170364--170488	62	2.0	62	95	0	223	44	9	10	36	1.72
170691--170765	23	3.5	20	72	22	62	10	14	0	74	1.07
170706--170763	27	2.1	29	87	6	84	10	15	0	74	1.08
170720--170773	27	2.0	27	85	0	72	12	14	1	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174735--174764	15	1.9	16	93	6	53	40	10	0	50	1.36
174745--174777	17	1.9	17	88	11	50	48	3	0	48	1.17
177248--177333	41	2.2	41	81	8	108	32	13	8	45	1.74
178783--178928	52	2.9	50	82	4	175	35	8	19	35	1.83
183519--183570	28	1.9	28	84	7	72	78	3	11	5	1.05
183498--183558	28	2.2	28	82	8	72	78	1	13	6	1.01
183547--183588	15	2.9	14	82	10	57	83	2	2	11	0.84
184465--184850	86	4.5	86	82	1	434	28	18	14	38	1.90
184465--184850	172	2.2	172	82	2	490	28	18	14	38	1.90
187006--187057	5	10.4	5	91	0	86	38	1	1	57	1.21
187945--187992	16	2.9	17	75	6	53	18	4	2	75	1.07
189296--189326	15	2.1	15	93	0	53	6	9	0	83	0.79
192097--192197	5	16.7	6	71	24	54	79	3	12	3	1.02
192135--192197	1	63.0	1	75	0	54	87	3	7	1	0.71
192137--192206	11	6.4	11	79	14	65	85	4	8	1	0.78
192138--192206	10	6.4	10	80	15	68	85	4	8	1	0.78
192137--192206	22	3.2	23	82	15	94	85	4	8	1	0.78
192135--192206	18	3.9	18	81	15	76	86	4	8	1	0.76
192135--192206	27	2.4	31	84	11	89	86	4	8	1	0.76
193246--193422	86	2.1	85	80	1	192	31	16	12	39	1.86
193371--193471	51	2.0	51	84	0	130	27	18	9	43	1.82
194089--194313	121	1.9	121	82	3	283	19	23	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193769--194324	304	1.8	305	80	1	677	19	23	14	42	1.88
195058--195105	19	2.5	19	80	9	53	45	4	16	33	1.67
195510--195543	12	2.7	13	90	4	52	17	0	2	79	0.86
196496--196551	28	2.0	29	89	3	87	26	1	7	64	1.29
196976--197037	32	2.0	32	84	9	83	46	20	4	27	1.71
197518--197564	3	17.0	3	79	16	57	63	2	0	34	1.06
197522--197564	8	5.0	8	81	13	50	62	2	0	34	1.08
197626--197675	22	2.2	23	85	10	75	64	0	2	34	1.05
197626--197675	3	17.3	3	87	8	77	64	0	2	34	1.05
197900--198338	114	3.9	113	77	3	382	46	15	20	18	1.85
198335--198602	115	2.3	115	82	1	313	44	15	20	20	1.87
206583--206637	27	2.0	28	89	3	85	72	5	12	9	1.26
206583--206664	28	3.0	28	84	8	89	74	6	12	7	1.21
207559--207777	86	2.5	86	79	1	224	29	18	14	37	1.90
224186--224210	10	2.5	10	100	0	50	84	0	16	0	0.63
226788--226815	2	14.0	2	100	0	56	50	0	0	50	1.00
226960--227066	50	2.1	51	81	10	119	59	5	7	27	1.47
227294--227354	30	2.0	30	87	0	86	31	11	8	49	1.68
227535--227568	14	2.4	14	90	9	52	47	0	0	52	1.00
227585--227656	27	2.7	27	70	24	62	45	2	1	50	1.25
227740--227768	5	5.8	5	100	0	58	17	0	0	82	0.66
229713--229751	15	2.8	13	82	14	51	0	12	10	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230801--231344	43	12.7	43	80	5	514	43	17	12	26	1.84
230802--231344	173	3.2	171	82	4	580	44	17	12	25	1.84
231784--231882	23	4.3	23	81	5	103	43	15	7	34	1.73
231855--231913	31	1.9	31	89	0	91	35	18	10	35	1.85
231882--231963	21	3.7	22	71	18	71	36	14	12	36	1.84
233542--233603	20	3.1	20	72	6	54	3	24	1	70	1.10
237459--237518	6	9.7	6	75	10	50	76	5	0	18	0.96
237461--237517	11	5.3	11	78	16	57	75	5	0	19	0.99
237461--237517	15	3.9	14	80	19	64	75	5	0	19	0.99
237447--237515	22	3.4	19	71	22	59	75	5	0	18	1.00
239933--239957	3	8.3	3	100	0	50	32	0	0	68	0.90
244365--244405	17	2.5	17	96	4	75	31	34	29	4	1.79
253757--253822	34	1.9	34	93	0	114	42	13	19	24	1.87
254549--254722	64	2.8	62	79	4	195	37	12	12	36	1.82
254791--254988	63	3.2	63	74	13	183	36	13	11	38	1.81
254574--254985	206	2.0	205	80	6	467	37	14	11	37	1.81
255126--255496	62	6.0	62	72	10	236	36	11	11	39	1.78
255151--255493	124	2.8	121	75	10	316	37	11	12	39	1.79
255198--255494	125	2.4	125	80	5	352	36	12	12	39	1.80
255572--255827	124	2.1	124	80	4	284	35	14	12	37	1.85
255574--255798	62	3.6	62	76	10	201	36	12	14	36	1.84
256759--256787	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257046--257091	20	2.3	20	100	0	92	19	30	21	28	1.98
258746--258838	39	2.4	40	87	7	129	15	1	62	21	1.38
262760--262811	27	1.9	27	84	7	70	26	5	36	30	1.80
263160--263202	21	2.0	21	95	0	77	25	44	2	27	1.66
263159--263280	18	6.8	18	73	14	108	32	35	4	27	1.78
264483--264579	50	1.9	50	91	0	158	28	19	25	25	1.99
265035--265081	17	2.8	17	72	15	53	36	4	0	59	1.17
270108--270173	17	3.8	17	73	15	62	45	0	0	54	0.99
272400--272432	17	1.9	17	100	0	66	24	12	15	48	1.78
281143--281173	15	2.0	16	93	6	55	45	12	3	38	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100