genome.fa.s113.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  49  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11937556--11937909	166	2.1	166	81	4	392	39	13	14	33	1.85
11938061--11938858	43	18.8	43	73	10	403	39	13	14	32	1.85
11938066--11938463	86	4.6	86	80	5	455	39	13	15	32	1.85
11938504--11938623	44	2.7	45	82	5	122	45	13	10	30	1.76
11938649--11938848	85	2.3	86	84	1	276	37	14	15	34	1.87
11939056--11939355	147	2.0	148	96	1	548	32	18	9	39	1.83
11950827--11950883	3	19.0	3	100	0	114	33	0	0	66	0.92
11951324--11951381	23	2.5	24	75	8	66	70	1	5	22	1.16
11952310--11952338	4	7.2	4	100	0	58	24	0	24	51	1.48
11959812--11959837	13	2.0	13	100	0	52	61	0	0	38	0.96
11961854--11962904	544	1.9	543	90	2	1689	39	8	11	40	1.71
11971960--11971993	16	2.2	15	89	5	50	8	2	0	88	0.62
11972121--11972146	12	2.2	12	100	0	52	0	7	0	92	0.39
11972203--11972368	44	3.9	44	79	8	173	42	13	15	28	1.85
11972217--11972342	39	3.1	40	83	6	146	42	15	15	26	1.86
11978663--11978717	2	27.5	2	88	0	83	54	0	0	45	0.99
11978666--11978717	18	2.9	18	97	0	95	55	0	0	44	0.99
11980882--11981242	199	1.8	200	80	7	448	38	10	6	44	1.64
11984023--11984056	2	17.5	2	93	6	61	50	0	0	50	1.00
11988230--11988281	23	2.2	24	77	16	56	53	9	0	36	1.34
11988231--11988277	20	2.4	21	80	20	57	53	10	0	36	1.36
11991033--11991070	19	2.0	20	89	5	60	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11991973--11992073	30	3.4	30	87	5	152	56	1	1	39	1.22
11992634--11992676	18	2.3	19	80	4	52	51	2	0	46	1.13
11992736--11992816	13	5.8	13	73	17	65	66	1	1	30	1.07
11992733--11992816	25	3.5	24	82	7	109	65	1	1	32	1.08
11992769--11992818	17	3.0	16	80	8	55	64	2	2	32	1.16
11992853--11992895	11	4.1	11	76	11	54	44	2	0	53	1.13
11992858--11992895	20	1.9	20	94	0	67	44	2	0	52	1.14
11993002--11993043	12	3.3	13	87	12	61	45	0	0	54	0.99
11995018--11995068	21	2.4	22	80	3	59	29	1	11	56	1.46
12000744--12000786	20	2.2	20	87	4	61	39	0	4	55	1.20
12008298--12008322	12	2.1	12	100	0	50	44	0	0	56	0.99
12010088--12010272	74	2.5	74	82	7	232	47	4	6	41	1.51
12011723--12011782	27	2.3	26	80	8	68	33	11	0	55	1.36
12012290--12012350	27	2.3	27	100	0	122	19	9	29	40	1.84
12014730--12014754	10	2.5	10	100	0	50	52	24	0	24	1.48
12014730--12014774	12	3.9	12	85	5	58	51	22	0	26	1.49
12024234--12024275	18	2.4	18	88	4	68	28	9	9	52	1.65
12036568--12036607	12	3.6	12	80	19	59	42	0	57	0	0.98
12036566--12036655	21	4.3	21	85	2	119	50	0	50	0	1.00
12036564--12036663	15	7.1	15	69	15	61	52	0	48	0	1.00
12036566--12036663	10	9.5	11	74	13	84	51	0	48	0	1.00
12036563--12036670	12	9.8	12	67	21	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12036573--12036667	21	4.6	21	79	12	85	51	0	48	0	1.00
12036588--12036672	15	5.3	15	70	20	55	55	0	44	0	0.99
12037404--12037463	28	2.1	28	84	6	77	58	5	0	36	1.20
12037414--12037447	15	2.3	15	89	0	50	70	0	0	29	0.87
12043051--12043089	3	13.0	3	100	0	78	33	0	0	66	0.92
12048584--12048638	25	2.2	25	83	9	67	40	5	5	49	1.49
12048677--12048713	19	1.9	19	94	0	65	72	5	13	8	1.24
12048700--12048753	24	2.2	23	81	12	63	75	7	3	12	1.14
12049621--12049645	3	8.3	3	100	0	50	68	0	0	32	0.90
12049889--12051315	42	34.3	41	78	11	1089	44	15	14	25	1.83
12049894--12051315	83	17.1	84	79	6	1306	44	15	14	25	1.84
12050219--12050277	31	1.9	31	93	6	102	47	11	16	23	1.80
12050177--12050327	73	2.1	73	92	0	248	47	12	17	23	1.81
12050249--12051315	125	8.5	124	81	7	1091	45	15	14	25	1.83
12052091--12052241	63	2.4	65	75	7	157	33	25	11	29	1.91
12052894--12052927	15	2.4	14	90	5	50	2	11	0	85	0.71
12056954--12057122	56	3.2	53	73	12	166	27	8	8	56	1.57
12058398--12058439	21	1.9	23	85	9	61	4	14	11	69	1.34
12065310--12065343	17	2.0	17	88	0	50	32	2	0	64	1.08
12065694--12065743	25	2.0	26	84	4	66	4	18	2	76	1.04
12065710--12065745	16	2.2	16	90	0	54	0	22	2	75	0.94
12065705--12065743	21	1.9	20	94	5	69	0	20	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12065694--12065743	5	9.8	5	80	10	57	4	18	2	76	1.04
12066725--12066767	20	2.2	19	91	4	68	25	0	0	74	0.82
12066723--12066820	27	3.7	27	72	18	73	24	3	0	72	0.99
12066918--12066957	15	2.7	16	81	11	50	72	7	0	20	1.08
12068563--12068598	16	2.2	16	90	0	54	2	8	2	86	0.77
12073560--12073598	20	2.0	20	85	10	53	7	10	17	64	1.48
12077680--12077766	41	2.1	41	93	0	147	35	11	6	45	1.67
12080818--12080899	29	2.8	29	80	12	87	31	2	2	63	1.20
12080818--12080906	30	3.0	30	85	6	110	30	2	2	65	1.17
12080832--12080921	33	2.8	31	80	13	103	28	1	4	65	1.19
12084218--12084242	10	2.5	10	100	0	50	60	16	0	24	1.36
12087335--12087413	39	2.0	39	92	4	133	30	17	11	40	1.85
12087686--12087751	34	1.9	34	90	0	105	22	18	9	50	1.75
12088406--12088443	19	2.0	19	94	0	67	71	0	5	23	1.07
12089117--12089153	12	3.1	12	92	0	65	54	0	0	45	1.00
12089115--12089150	18	2.0	18	88	0	54	50	0	0	50	1.00
12089767--12089815	22	2.2	23	85	3	64	55	0	32	12	1.37
12094121--12094157	12	3.1	12	92	0	65	45	0	0	54	1.00
12094124--12094159	18	2.0	18	88	0	54	50	0	0	50	1.00
12095878--12096089	47	4.4	49	89	4	324	28	10	24	36	1.89
12095878--12096089	96	2.2	96	93	1	354	28	10	24	36	1.89
12096066--12096114	25	2.0	25	100	0	98	36	6	20	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12096020--12096160	74	2.0	70	90	5	219	30	9	22	37	1.86
12096097--12096184	46	1.9	46	92	0	149	27	10	23	38	1.87
12096359--12096395	18	2.1	18	89	0	56	48	0	0	51	1.00
12099419--12099466	20	2.4	19	82	6	51	70	2	2	25	1.09
12099474--12099512	17	2.2	17	86	9	51	56	5	7	30	1.49
12101399--12101450	26	2.0	26	88	0	77	34	13	7	44	1.72
12101488--12101514	1	27.0	1	100	0	54	0	0	0	100	0.00
12108806--12108870	22	2.8	22	86	11	78	61	13	0	24	1.32
12108934--12109052	33	3.8	32	70	18	99	57	20	1	21	1.50
12109320--12109441	63	1.9	63	85	3	165	24	8	13	53	1.67
12109834--12109867	2	17.0	2	100	0	68	50	0	0	50	1.00
12110365--12110417	22	2.4	22	87	6	72	64	1	3	30	1.22
12116826--12116867	21	2.1	20	86	8	59	45	7	0	47	1.30
12117924--12117985	16	3.7	17	74	18	67	64	1	12	20	1.36
12120528--12120585	31	1.9	31	85	3	82	43	18	8	29	1.80
12121127--12121159	16	2.0	17	94	5	59	66	0	9	24	1.20
12121135--12121192	12	5.3	10	82	13	62	63	0	13	22	1.29
12123370--12123421	12	4.3	12	77	0	50	9	19	5	65	1.42
12123370--12123427	18	3.2	18	80	0	71	10	20	5	63	1.44
12123430--12123471	8	5.2	8	86	8	59	4	7	0	88	0.64
12123429--12123467	14	2.7	14	84	4	51	5	7	0	87	0.68
12123430--12123471	17	2.6	17	88	7	61	4	7	0	88	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12126704--12126756	3	18.0	3	96	3	99	66	0	0	33	0.92
12127559--12127617	29	2.0	29	90	6	93	38	16	15	28	1.89
12129866--12129962	49	2.0	49	91	0	158	38	21	9	30	1.85
12134672--12135078	57	6.6	58	72	15	155	48	6	10	34	1.62
12134695--12135082	60	6.3	60	77	12	340	47	6	10	35	1.62
12134809--12134855	19	2.5	19	92	0	76	40	8	6	44	1.60
12134749--12134911	75	2.1	75	87	4	227	46	5	9	38	1.60
12134809--12134863	19	2.9	19	88	0	74	41	7	5	45	1.55
12134828--12135082	57	4.4	58	87	3	309	47	5	10	36	1.61
12137501--12137527	2	13.5	2	100	0	54	0	0	48	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100