genome.fa.s113.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  66  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15595115--15595703	158	3.7	159	75	5	505	24	28	25	20	1.99
15595114--15595552	159	2.8	158	77	5	429	25	28	26	20	1.99
15595701--15595740	21	1.9	21	84	0	53	10	40	20	30	1.85
15595927--15595982	26	2.2	26	93	0	94	25	19	25	30	1.98
15597618--15598121	158	3.2	156	74	8	410	23	29	26	20	1.99
15598095--15598147	26	2.0	26	89	7	81	26	22	24	26	2.00
15598278--15598330	26	2.0	26	85	7	72	28	18	22	30	1.98
15597936--15598489	183	3.0	183	82	6	631	24	28	25	22	1.99
15598621--15598673	26	2.0	26	92	0	88	28	22	24	24	2.00
15599593--15599641	25	1.9	26	87	4	73	22	6	10	61	1.50
15599593--15599644	26	2.0	26	85	7	70	21	5	13	59	1.55
15600065--15600117	26	2.0	26	86	13	74	28	16	24	30	1.97
15601106--15601184	26	3.0	26	88	3	124	25	18	29	26	1.98
15601325--15601964	355	1.8	355	84	1	888	26	27	25	20	1.99
15601721--15602158	158	2.8	157	83	4	524	24	28	25	21	1.99
15601357--15602440	512	2.1	513	84	2	1392	25	27	24	21	1.99
15601357--15602630	513	2.5	512	81	3	1409	25	28	24	20	1.99
15602697--15602749	26	2.0	26	88	0	79	28	20	24	26	1.99
15604127--15604179	26	2.0	26	89	7	81	26	22	24	26	2.00
15604348--15605017	159	4.2	157	75	5	551	25	30	24	19	1.98
15604337--15605157	318	2.6	318	82	2	911	24	30	25	19	1.98
15605229--15606142	485	1.9	484	81	4	1126	24	28	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15606301--15606353	26	2.0	26	92	7	90	28	20	24	26	1.99
15605958--15606511	185	3.0	184	79	6	575	25	26	25	22	2.00
15607692--15608112	158	2.7	159	77	4	429	24	26	27	20	1.99
15609013--15609066	26	2.1	26	86	6	74	27	18	27	25	1.98
15609220--15609272	26	2.0	26	89	7	81	30	20	20	28	1.98
15609698--15609753	26	2.2	26	93	0	94	25	17	26	30	1.97
15610866--15610918	26	2.0	26	88	0	79	30	20	24	24	1.99
15610681--15611174	184	2.7	182	81	5	532	26	27	25	20	1.99
15611050--15611102	26	2.0	26	88	0	79	28	20	24	26	1.99
15612004--15612488	158	3.1	157	77	7	487	24	30	26	18	1.98
15613178--15613230	26	2.0	26	89	7	81	30	18	22	28	1.98
15613203--15613696	157	3.1	155	79	6	528	23	30	27	18	1.97
15620111--15620163	26	2.0	26	92	7	90	30	20	22	26	1.98
15620137--15620639	159	3.2	157	78	4	519	24	29	26	20	1.99
15620613--15620665	26	2.0	26	82	7	63	26	20	24	28	1.99
15620790--15621089	159	1.9	159	87	1	440	22	31	29	17	1.96
15621146--15621198	26	2.0	26	89	7	81	30	20	22	26	1.98
15621175--15621286	57	2.0	57	89	0	170	35	25	22	16	1.94
15621400--15621452	26	2.0	26	92	7	90	28	20	24	26	1.99
15620978--15621483	248	2.0	248	84	3	663	25	28	25	20	1.99
15621425--15622193	159	4.8	159	74	6	563	23	29	26	19	1.98
15621425--15622247	320	2.6	316	80	3	862	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15623424--15623479	26	2.2	26	93	6	96	23	19	26	30	1.98
15623796--15623846	26	2.0	26	92	0	84	23	19	27	29	1.98
15623227--15624111	357	2.4	358	83	5	1023	22	29	27	20	1.99
15625373--15625425	26	2.0	26	89	7	81	30	20	22	26	1.98
15625853--15625905	26	2.0	26	92	0	88	24	22	26	26	2.00
15632477--15632767	159	1.8	159	83	4	390	24	28	27	19	1.98
15632477--15632836	159	2.3	159	79	4	386	24	29	26	19	1.98
15632949--15633007	26	2.3	26	91	5	95	23	20	28	27	1.99
15633336--15633388	26	2.0	26	86	13	74	30	16	22	30	1.96
15632638--15633474	368	2.3	343	75	13	763	24	29	26	19	1.98
15633834--15633886	26	2.0	26	92	7	90	26	20	26	26	1.99
15634555--15634607	26	2.0	26	92	7	90	28	20	24	26	1.99
15635566--15635617	26	2.0	26	88	7	79	28	17	25	28	1.97
15635907--15635959	26	2.0	26	85	0	70	26	20	26	26	1.99
15635889--15636263	197	1.9	196	83	5	481	22	29	27	20	1.99
15636129--15636575	159	2.8	158	77	5	452	23	30	26	18	1.98
15638198--15638250	26	2.0	26	92	0	88	26	16	28	28	1.97
15638747--15638819	26	2.8	27	83	8	107	34	16	21	27	1.95
15639166--15639218	26	2.0	26	85	0	70	22	16	30	30	1.96
15639376--15639428	26	2.0	26	92	0	88	32	16	24	26	1.97
15639402--15639764	159	2.3	159	80	5	403	24	30	25	19	1.98
15639878--15639930	26	2.0	26	88	0	79	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15640065--15640115	26	2.0	26	84	7	68	27	15	27	29	1.96
15641128--15641180	26	2.0	26	92	0	88	24	18	28	28	1.98
15641850--15641902	26	2.0	26	89	7	81	30	16	24	28	1.97
15642389--15642442	27	2.0	27	89	10	85	31	20	22	25	1.98
15642890--15642942	26	2.0	26	88	0	79	28	20	24	26	1.99
15643039--15643508	159	3.0	158	78	4	417	19	27	30	22	1.98
15643480--15643532	26	2.0	26	85	7	72	26	20	20	32	1.98
15644433--15644683	134	1.9	135	85	0	351	18	26	28	26	1.98
15645263--15645988	158	4.6	159	76	3	577	20	27	29	23	1.99
15645263--15645988	317	2.3	317	83	2	886	20	27	29	23	1.99
15646096--15646147	26	2.0	25	92	3	86	26	21	21	30	1.98
15646289--15646341	26	2.0	26	88	0	79	32	26	15	26	1.95
15645986--15646499	193	2.7	188	77	9	519	20	24	30	24	1.99
15646354--15646658	159	1.9	158	84	4	409	16	27	33	22	1.95
15646632--15646684	26	2.0	26	85	7	72	26	24	20	28	1.99
15646755--15646787	11	3.0	11	100	0	66	18	27	36	18	1.94
15647903--15647955	26	2.0	26	89	7	81	28	24	18	28	1.98
15648586--15648635	26	1.9	26	91	0	82	32	28	14	26	1.94
15649060--15649112	26	2.0	26	85	7	72	28	22	20	28	1.99
15649599--15649651	26	2.0	26	85	7	72	28	22	18	30	1.98
15650835--15650887	26	2.0	26	85	0	70	26	30	16	26	1.97
15650948--15651364	159	2.6	159	71	7	362	18	25	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15651337--15651389	26	2.0	26	85	0	70	22	26	24	26	2.00
15651459--15651495	11	3.4	11	92	0	56	16	29	29	24	1.96
15652031--15652577	159	3.4	158	76	4	420	19	26	29	25	1.98
15652635--15652664	12	2.5	12	94	0	51	30	26	36	6	1.82
15653423--15653475	26	2.0	26	85	0	70	26	24	18	30	1.98
15653648--15653942	159	1.9	159	79	4	344	20	24	30	25	1.99
15654293--15654343	26	2.0	26	92	7	86	25	27	19	27	1.99
15655994--15656046	26	2.0	26	85	7	72	28	22	16	32	1.96
15656190--15656242	26	2.0	26	85	7	72	30	26	16	26	1.97
15655924--15656513	184	3.1	184	78	7	548	20	27	27	24	1.99
15657700--15657752	26	2.0	26	89	7	81	28	24	18	28	1.98
15658165--15658223	27	2.2	27	81	6	66	57	6	10	25	1.56
15658424--15658474	26	2.0	26	88	7	77	29	29	13	27	1.94
15658900--15658952	26	2.0	26	85	7	72	26	20	20	32	1.98
15659384--15660145	158	4.8	158	77	6	628	18	26	30	23	1.98
15659384--15660144	318	2.4	316	81	3	850	18	26	30	23	1.98
15660447--15660499	26	2.0	26	92	7	90	28	26	20	24	1.99
15660143--15660520	196	1.9	195	84	3	510	24	26	26	22	2.00
15660480--15660848	159	2.3	157	77	7	370	20	28	31	20	1.97
15660946--15660998	26	2.0	26	92	7	90	26	24	20	28	1.99
15660165--15661503	696	1.9	695	83	2	1729	20	27	28	22	1.99
15661486--15661538	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15662208--15662258	26	2.0	26	88	0	75	29	29	15	25	1.96
15665167--15665245	24	3.3	23	82	5	77	26	31	18	22	1.97
15667850--15667902	26	2.0	26	89	7	81	28	26	18	26	1.98
15668305--15668596	158	1.8	158	83	4	383	19	26	28	25	1.99
15668889--15668939	26	2.0	26	92	0	84	29	25	17	27	1.98
15669080--15669132	26	2.0	26	92	0	88	30	30	15	24	1.95
15669424--15669474	26	2.0	26	92	7	86	27	27	15	29	1.96
15670647--15670699	26	2.0	26	85	0	70	26	18	22	32	1.97
15671161--15671213	25	2.1	26	89	3	81	24	26	22	26	2.00
15670898--15671530	342	1.8	343	83	4	837	20	27	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100