genome.fa.s113.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  16  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4469549--4469616	34	2.0	34	94	0	118	38	8	29	23	1.85
4481075--4481100	3	8.7	3	100	0	52	69	0	0	30	0.89
4481904--4481952	22	2.1	22	85	11	62	63	16	16	4	1.46
4481904--4481956	23	2.2	25	83	6	65	64	15	16	3	1.44
4491561--4491606	2	23.0	2	95	0	83	50	0	2	47	1.13
4497949--4497978	15	2.0	15	100	0	60	60	26	0	13	1.34
4500842--4500873	7	4.6	7	96	0	55	9	12	59	18	1.59
4500839--4500873	14	2.5	14	90	0	61	8	14	57	20	1.63
4504482--4504528	23	2.0	23	84	8	60	61	0	0	38	0.96
4506748--4506804	25	2.3	25	79	8	64	64	0	0	35	0.93
4519082--4519114	16	1.9	18	88	11	52	48	0	0	51	1.00
4519708--4519762	21	2.7	20	86	10	76	29	0	7	63	1.21
4519721--4519764	12	3.9	12	82	17	67	29	0	6	63	1.20
4535761--4535790	2	15.0	2	100	0	60	50	0	0	50	1.00
4535790--4535821	2	16.0	2	100	0	64	50	0	50	0	1.00
4536924--4536950	2	13.5	2	100	0	54	51	0	0	48	1.00
4547189--4547313	64	1.9	66	82	6	157	17	40	14	28	1.89
4551572--4551625	25	2.2	24	77	9	56	42	1	1	53	1.22
4554238--4554323	34	2.6	33	83	3	127	44	2	4	48	1.36
4560581--4560632	21	2.5	21	96	3	97	50	0	0	50	1.00
4560618--4560663	16	2.7	18	73	10	51	60	2	0	36	1.09
4560597--4560669	30	2.4	31	79	4	85	58	1	0	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4566617--4566721	53	2.0	53	90	3	167	28	10	8	52	1.65
4567560--4567592	14	2.3	15	89	5	50	39	0	0	60	0.97
4574255--4574322	34	2.0	33	88	2	100	27	10	13	48	1.74
4576496--4576528	10	3.2	11	91	8	52	42	0	21	36	1.53
4577383--4577436	7	7.4	7	79	8	54	48	1	3	46	1.30
4578081--4578114	12	2.8	12	90	0	50	52	2	0	44	1.16
4580222--4580396	89	2.0	89	91	0	287	40	2	11	45	1.55
4583119--4583175	30	1.9	30	88	0	87	49	0	8	42	1.34
4586526--4586757	21	11.1	21	66	8	87	52	14	6	27	1.64
4586708--4586753	20	2.2	20	88	3	65	56	6	6	30	1.50
4586613--4586757	41	3.5	40	75	7	123	51	12	6	29	1.63
4587838--4587868	10	3.1	10	95	0	53	22	25	0	51	1.48
4589742--4589768	13	2.1	13	100	0	54	0	22	0	77	0.76
4592001--4592050	24	2.1	24	85	7	66	20	14	8	58	1.61
4596247--4596397	18	8.9	18	73	16	126	54	0	0	43	1.09
4596256--4596398	8	20.1	7	69	17	66	55	0	0	42	1.09
4596252--4596381	32	4.1	33	75	19	118	56	0	0	42	1.10
4596263--4596399	28	4.7	28	73	21	113	56	0	0	42	1.10
4596493--4596558	26	2.6	25	80	7	87	46	3	1	48	1.26
4603661--4603705	16	2.9	16	83	9	58	75	0	4	20	0.97
4607959--4607995	15	2.6	15	87	8	51	56	0	5	37	1.22
4608788--4608826	14	2.7	15	80	4	53	38	7	10	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4610675--4610700	2	13.0	2	100	0	52	50	0	0	50	1.00
4611571--4611608	20	1.9	20	100	0	76	47	5	5	42	1.48
4611697--4611748	26	2.0	26	84	0	68	46	3	0	50	1.20
4611996--4612055	2	30.0	2	89	0	57	50	11	0	38	1.39
4618324--4618394	34	2.1	33	84	7	90	25	9	14	50	1.73
4621447--4621500	23	2.5	21	84	6	72	50	1	1	46	1.23
4621447--4621500	7	7.4	7	79	8	54	50	1	1	46	1.23
4622152--4622192	2	20.5	2	89	0	64	51	2	0	46	1.14
4624328--4624505	88	2.0	89	91	1	286	40	5	10	44	1.60
4625570--4625613	23	2.0	22	90	4	70	27	15	20	36	1.93
4627244--4627300	30	1.9	30	88	0	87	49	0	8	42	1.34
4630337--4630369	2	16.5	2	100	0	66	51	0	0	48	1.00
4630649--4630876	21	10.9	21	66	8	79	53	14	6	25	1.64
4630832--4630877	20	2.2	20	88	3	65	56	6	6	30	1.50
4630737--4630879	41	3.5	40	75	7	119	52	12	6	28	1.63
4632460--4632523	28	2.3	28	78	10	69	40	1	1	56	1.18
4636464--4636513	24	2.1	24	85	7	66	20	14	8	58	1.61
4640738--4640842	28	3.7	28	81	10	115	55	0	0	43	1.06
4640737--4640869	36	3.6	36	76	16	119	57	0	0	41	1.09
4640729--4640850	44	2.7	46	78	13	128	54	0	0	44	1.05
4640797--4640860	28	2.3	29	83	8	71	57	0	0	42	0.98
4640730--4640873	23	6.3	23	69	13	57	57	0	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4648173--4648217	23	2.0	23	82	8	56	77	0	2	20	0.87
4650724--4650749	2	13.0	2	100	0	52	50	0	0	50	1.00
4662637--4662678	16	2.4	17	80	15	50	52	2	0	45	1.13
4662647--4662679	16	2.0	17	94	5	59	51	0	0	48	1.00
4662840--4662877	20	1.9	20	88	0	58	44	0	7	47	1.32
4671060--4671084	10	2.5	10	100	0	50	40	0	0	60	0.97
4671036--4671100	16	4.0	16	75	13	53	38	0	3	58	1.14
4671095--4671143	19	2.5	20	87	9	66	48	0	4	46	1.20
4671102--4671143	20	2.1	20	86	0	57	52	0	2	45	1.13
4671156--4671212	24	2.4	24	88	5	80	35	0	0	64	0.93
4671165--4671206	16	2.6	16	78	10	50	38	0	0	61	0.96
4671045--4671242	108	1.8	110	93	2	346	41	0	3	55	1.15
4671203--4671251	19	2.5	19	84	12	64	46	2	2	48	1.25
4671206--4671250	20	2.2	20	88	7	65	46	2	2	48	1.26
4671082--4671236	38	4.2	37	65	17	99	41	0	1	56	1.10
4677028--4677078	26	2.0	26	88	0	75	45	3	0	50	1.20
4677321--4677353	2	16.5	2	100	0	66	48	0	0	51	1.00
4680666--4680779	60	1.9	60	85	8	160	33	14	12	39	1.84
4683215--4683268	26	2.1	26	92	0	90	25	14	12	46	1.81
4684771--4684827	20	2.8	20	84	7	62	45	0	1	52	1.11
4686243--4686313	16	4.4	17	77	13	69	47	1	5	45	1.35
4686393--4686433	20	2.0	20	85	0	55	48	2	4	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4688437--4688714	139	2.0	139	100	0	556	26	17	19	35	1.94
4695508--4695549	21	2.0	21	95	0	75	33	7	14	45	1.72
4695694--4695749	17	3.6	15	78	11	60	37	0	1	60	1.07
4695684--4695749	31	2.1	31	83	10	82	39	0	1	59	1.07
4695745--4695788	20	2.2	20	91	0	70	56	2	0	40	1.11
4695814--4695857	21	2.0	23	86	13	65	38	0	0	61	0.96
4696353--4696407	16	3.5	16	78	11	53	29	0	0	70	0.87
4696359--4696409	23	2.2	23	93	6	86	29	0	0	70	0.87
4696401--4696452	23	2.4	22	84	12	72	46	0	1	51	1.12
4698386--4698425	6	6.5	6	88	5	53	65	5	30	0	1.14
4702295--4702357	21	3.0	21	81	9	67	26	11	20	41	1.86
4719076--4719113	8	4.8	8	81	12	51	31	0	2	65	1.06
4720071--4720110	2	20.0	2	100	0	80	50	0	50	0	1.00
4725650--4725683	17	2.0	17	88	0	50	70	0	0	29	0.87
4725667--4725749	42	2.0	40	83	4	103	59	8	7	25	1.53
4725669--4725763	42	2.3	41	76	5	100	62	8	6	23	1.47
4727902--4727929	10	2.8	10	100	0	56	0	28	10	60	1.30
4729118--4729158	17	2.4	18	80	12	50	31	7	9	51	1.62
4730996--4731097	51	2.0	51	92	0	168	27	11	27	33	1.92
4734910--4734951	23	1.9	23	85	9	61	69	0	4	26	1.08
4735374--4735422	22	2.2	22	77	0	53	36	2	4	57	1.30
4737069--4737188	60	2.0	60	95	0	213	34	11	20	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4746416--4746454	2	20.5	2	89	10	64	48	0	0	51	1.00
4759044--4759070	2	13.5	2	100	0	54	51	0	0	48	1.00
4758912--4759226	158	2.0	158	100	0	630	36	17	15	30	1.91
4759202--4759226	2	12.5	2	100	0	50	52	0	0	48	1.00
4764174--4764280	36	2.9	37	91	2	164	38	13	20	28	1.90
4766504--4766551	22	2.2	22	88	0	69	62	2	0	35	1.07
4778963--4778996	18	1.9	18	88	5	52	70	2	0	26	1.01
4779752--4779795	10	4.4	10	94	0	70	63	2	0	34	1.07
4779892--4779941	26	2.0	26	84	4	66	28	0	2	70	0.99
4782883--4782945	27	2.4	26	86	7	83	34	1	0	63	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100