genome.fa.s113.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  33  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9049569--9049679	16	7.1	16	68	23	60	48	1	0	49	1.11
9049624--9049687	26	2.5	26	87	5	87	48	3	0	48	1.17
9057866--9057896	15	2.1	15	93	0	53	41	19	9	29	1.83
9058343--9058400	24	2.4	25	85	8	75	36	15	5	43	1.69
9058353--9058426	35	2.1	34	90	2	112	39	14	4	41	1.65
9058387--9058519	24	5.6	23	81	10	144	36	15	5	42	1.69
9058398--9058464	14	5.4	14	70	26	69	38	14	4	41	1.67
9058386--9058513	48	2.6	48	88	3	186	36	16	5	41	1.71
9058995--9059146	79	1.9	79	89	2	234	32	24	7	35	1.84
9059757--9059803	24	2.0	24	95	0	85	8	19	0	72	1.10
9059760--9059811	24	2.2	24	86	6	70	9	19	0	71	1.13
9062711--9062758	13	3.6	13	78	15	53	56	4	0	39	1.19
9062711--9062761	12	3.9	13	76	16	52	54	3	0	41	1.19
9062683--9062986	15	20.9	15	68	19	112	56	3	1	37	1.29
9062825--9062871	23	2.1	22	92	4	76	59	2	0	38	1.09
9062935--9063009	13	5.9	13	73	16	59	56	2	4	37	1.32
9062790--9063009	36	6.2	35	72	18	143	56	3	2	37	1.31
9062951--9063020	36	2.0	35	88	2	104	58	0	5	35	1.22
9063041--9063123	19	4.8	18	75	12	68	46	0	0	53	1.00
9063050--9063160	16	7.1	16	68	23	60	48	1	0	49	1.11
9063105--9063168	26	2.5	26	87	5	87	48	3	0	48	1.17
9066765--9066822	24	2.3	24	82	14	64	36	13	1	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9066812--9066936	25	5.2	24	79	3	144	40	16	4	38	1.70
9066812--9066936	50	2.6	48	85	3	162	40	16	4	38	1.70
9068162--9068196	15	2.3	15	90	0	52	14	14	0	71	1.15
9068162--9068261	8	12.8	8	70	15	66	14	17	0	69	1.20
9068175--9068250	34	2.3	32	84	6	91	11	17	0	71	1.15
9068159--9068262	40	2.6	39	75	14	106	13	18	0	68	1.21
9071763--9071865	47	2.2	46	85	10	131	25	10	8	55	1.63
9071763--9071865	46	2.2	47	85	10	133	25	10	8	55	1.63
9073473--9073814	28	12.7	27	66	26	122	55	2	1	40	1.21
9073596--9073830	18	11.9	19	68	20	103	56	1	2	39	1.21
9073556--9073718	53	3.0	52	75	18	156	57	1	0	41	1.11
9073610--9073781	97	1.8	91	82	14	215	55	1	1	41	1.20
9073473--9073830	13	27.8	13	66	23	138	55	2	1	40	1.22
9073772--9073841	36	2.0	35	88	2	104	58	2	4	34	1.32
9073473--9073829	15	25.2	14	67	20	142	56	2	1	40	1.22
9073876--9073954	16	4.9	15	72	17	52	49	1	0	49	1.09
9073859--9073928	20	3.5	21	79	9	67	45	0	0	54	0.99
9073918--9073965	9	5.4	9	78	14	55	47	2	0	50	1.12
9073918--9073968	26	2.0	25	92	3	84	50	1	0	47	1.12
9076939--9076987	16	2.7	19	78	15	59	32	0	6	61	1.21
9076951--9077044	16	5.7	17	70	10	54	30	0	6	62	1.20
9077445--9077497	26	2.1	26	82	3	63	33	5	18	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9077516--9077574	31	1.9	31	82	6	75	28	22	20	28	1.98
9077629--9077674	20	2.3	20	92	3	76	26	28	21	23	1.99
9077895--9077921	5	5.4	5	100	0	54	18	40	40	0	1.51
9078013--9078059	12	4.1	11	82	12	51	12	2	4	80	0.94
9078130--9078294	57	2.8	58	90	4	253	44	9	13	32	1.76
9078137--9078225	27	3.2	27	62	20	65	41	7	14	35	1.75
9078130--9078284	59	2.7	57	92	4	249	43	8	14	33	1.76
9081716--9081750	17	2.1	17	89	5	54	88	0	11	0	0.51
9081718--9081752	11	3.1	11	87	4	52	85	0	14	0	0.59
9083312--9083759	40	11.0	40	90	4	636	23	18	20	37	1.95
9083312--9083759	163	2.7	163	95	0	808	23	18	20	37	1.95
9083312--9083759	123	3.6	122	91	5	660	23	18	20	37	1.95
9083766--9083831	7	8.6	8	88	8	86	87	12	0	0	0.53
9083773--9083831	18	3.3	18	88	9	93	88	11	0	0	0.53
9083766--9083823	1	58.0	1	78	0	62	89	10	0	0	0.48
9083766--9083823	10	5.4	10	82	13	71	89	10	0	0	0.48
9084028--9084076	16	2.7	19	78	15	59	32	0	6	61	1.21
9084537--9084589	26	2.1	26	82	3	63	33	5	18	41	1.74
9084597--9084623	12	2.2	12	100	0	54	33	22	22	22	1.97
9084598--9084668	31	2.3	32	87	7	110	28	23	23	23	2.00
9084721--9084766	20	2.3	20	92	3	76	26	28	21	23	1.99
9085089--9085135	12	4.1	11	82	12	51	12	2	4	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9085206--9085421	59	3.7	57	87	7	319	43	8	14	33	1.76
9085190--9085421	118	2.0	117	89	6	362	44	8	13	33	1.75
9102024--9102064	20	2.0	22	85	9	59	51	2	4	41	1.36
9102751--9102780	12	2.5	12	94	0	51	60	0	3	36	1.14
9105537--9105604	35	1.9	36	82	8	86	38	10	4	47	1.58
9106011--9106073	30	2.1	30	93	0	108	53	26	6	12	1.62
9106827--9107194	198	1.9	198	83	1	477	32	19	21	26	1.97
9107153--9107582	225	1.9	225	86	0	619	34	20	20	25	1.96
9111338--9111393	11	4.8	12	78	8	53	42	1	0	55	1.10
9112433--9112462	10	3.1	10	95	4	53	36	0	0	63	0.95
9114103--9114173	34	2.1	34	84	10	92	30	12	7	49	1.67
9122573--9122635	26	2.4	25	79	10	65	53	3	3	39	1.33
9123908--9123949	18	2.2	20	87	8	61	45	0	4	50	1.23
9124952--9124989	15	2.6	15	91	4	60	28	0	0	71	0.87
9125807--9125839	17	2.0	17	88	5	50	6	9	3	81	0.95
9128696--9128736	19	2.2	19	91	4	66	53	7	0	39	1.29
9129255--9129291	13	2.8	13	91	4	56	64	2	5	27	1.28
9132353--9132401	16	2.8	17	81	12	64	18	12	6	63	1.48
9135082--9135128	15	3.2	15	81	6	51	63	17	0	19	1.30
9135060--9135251	97	2.0	97	95	0	348	59	19	3	17	1.52
9135212--9135262	20	2.5	21	80	6	68	58	27	3	9	1.47
9135309--9135351	22	2.0	22	85	0	59	60	11	9	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9136922--9136952	14	2.1	15	94	5	55	0	9	0	90	0.46
9140526--9140568	13	3.3	12	84	12	50	46	4	2	46	1.36
9140775--9140818	3	15.0	3	90	4	72	68	2	0	29	1.02
9141536--9141584	25	2.0	25	95	0	89	67	4	0	28	1.09
9142032--9142071	11	3.7	11	86	6	64	75	5	20	0	0.99
9142032--9142071	5	7.6	5	83	10	53	75	5	20	0	0.99
9142032--9142071	16	2.5	15	84	11	53	75	5	20	0	0.99
9146155--9146388	117	2.0	117	92	1	389	36	14	13	35	1.86
9152036--9152104	34	2.0	34	89	10	106	23	5	5	65	1.37
9152058--9152170	53	2.1	55	85	11	153	19	7	7	65	1.42
9159410--9159446	6	6.3	6	84	15	51	83	2	13	0	0.74
9159416--9159446	11	2.8	11	95	0	53	87	0	12	0	0.55
9172142--9172172	15	2.1	15	93	0	53	29	9	12	48	1.73
9173218--9173273	28	2.0	28	82	6	69	41	7	8	42	1.63
9173266--9173300	2	17.5	2	93	0	61	45	0	0	54	0.99
9179115--9179180	34	2.1	30	83	16	80	34	0	3	62	1.11
9179412--9179477	23	2.8	24	86	6	91	50	0	3	46	1.16
9183543--9183577	2	17.5	2	93	0	61	48	2	0	48	1.16
9184093--9184148	27	2.1	27	100	0	112	51	21	7	19	1.70
9187277--9187340	24	2.9	22	79	11	60	51	0	0	48	1.00
9187285--9187340	24	2.1	28	84	15	75	48	0	0	51	1.00
9187318--9187359	16	2.5	17	85	14	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9191238--9191271	17	2.0	17	100	0	68	29	23	23	23	1.99
9197640--9197681	10	4.5	10	80	14	54	33	0	0	66	0.92
9197782--9197831	22	2.4	22	83	9	61	54	6	2	38	1.37
9207650--9207687	15	2.4	16	86	8	60	47	5	2	44	1.39
9208753--9208847	47	2.0	49	87	4	140	25	8	6	60	1.50
9208749--9208857	47	2.2	51	75	11	127	22	7	5	64	1.40
9210399--9210445	23	2.0	24	91	4	78	34	8	8	48	1.64
9213089--9213168	17	4.7	17	80	8	83	33	17	22	26	1.96
9214269--9214337	25	3.0	24	76	18	65	69	1	5	23	1.18
9214267--9214311	19	2.4	19	85	7	56	68	0	6	24	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100