genome.fa.s113.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  77  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16442963--16443015	26	2.0	26	88	0	79	26	16	28	28	1.97
16442958--16443239	139	2.0	141	80	4	311	28	26	25	19	1.98
16443602--16443654	26	2.0	26	85	7	72	28	16	26	28	1.97
16444666--16444718	26	2.0	26	85	0	70	26	16	30	26	1.97
16445375--16445427	26	2.0	26	85	0	70	32	20	20	26	1.98
16445718--16445770	26	2.0	26	85	0	70	26	16	26	30	1.97
16445962--16446454	158	3.1	157	76	4	497	23	30	27	19	1.98
16446652--16447152	158	3.2	158	76	4	483	21	28	28	21	1.99
16448191--16448243	26	2.0	26	85	0	70	24	15	30	30	1.95
16454789--16454841	26	2.0	26	89	7	81	30	20	22	26	1.98
16454972--16455024	26	2.0	26	88	0	79	24	16	28	30	1.97
16455669--16455721	26	2.0	26	89	7	81	26	18	26	28	1.98
16455865--16455917	26	2.0	26	92	7	90	30	20	22	26	1.98
16455651--16456010	196	1.8	198	87	2	546	22	28	27	22	1.99
16456404--16456456	26	2.0	26	89	7	81	28	18	24	28	1.98
16455361--16456551	539	2.2	539	81	4	1366	23	27	26	21	1.99
16455458--16456733	539	2.4	538	80	5	1308	23	28	26	21	1.99
16456429--16456859	159	2.7	157	74	7	404	24	29	26	19	1.99
16456904--16456955	26	2.0	26	92	0	86	25	17	28	28	1.97
16457101--16457153	26	2.0	26	85	7	72	30	18	24	26	1.98
16456786--16457745	520	1.9	507	82	4	1190	23	26	27	22	1.99
16458859--16458925	26	2.6	26	90	0	116	25	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16459069--16459121	26	2.0	26	89	7	81	28	18	24	28	1.98
16459424--16459476	26	2.0	26	92	0	88	26	20	24	28	1.99
16461373--16461425	26	2.0	26	92	7	90	28	20	24	26	1.99
16462445--16462508	26	2.5	26	94	0	110	29	21	31	17	1.96
16462790--16463178	159	2.5	158	76	7	392	21	31	25	21	1.98
16463159--16463211	26	2.0	26	92	0	88	26	16	24	32	1.97
16463893--16463945	26	2.0	26	89	7	81	28	18	24	28	1.98
16464237--16464289	26	2.0	26	88	0	79	24	18	26	30	1.98
16465468--16466040	159	3.6	161	77	5	567	24	29	27	18	1.98
16466101--16466153	26	2.0	26	88	0	79	24	20	26	28	1.99
16466813--16466865	26	2.0	26	89	7	81	28	18	24	28	1.98
16467156--16467208	26	2.0	26	85	0	70	24	15	30	30	1.95
16467341--16467391	26	2.0	26	92	7	86	29	19	23	27	1.98
16466997--16467420	184	2.3	184	78	7	466	25	28	24	22	1.99
16466997--16467458	185	2.5	184	78	4	493	25	28	24	21	1.99
16467844--16467894	26	2.0	26	88	0	75	29	15	25	29	1.96
16468489--16468541	26	2.0	26	85	0	70	30	20	24	24	1.99
16468831--16468883	26	2.0	26	92	0	88	24	18	28	28	1.98
16469965--16469994	15	2.0	15	93	0	51	6	36	40	16	1.75
16470057--16470109	26	2.0	26	92	7	90	28	16	24	30	1.97
16470597--16470649	26	2.0	26	89	7	81	30	22	22	24	1.99
16470380--16470757	197	1.9	196	82	5	467	23	29	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16471515--16471567	26	2.0	26	92	7	90	28	20	24	26	1.99
16471995--16472047	26	2.0	26	85	7	72	30	16	22	30	1.96
16472183--16472235	26	2.0	26	92	7	90	28	20	24	26	1.99
16471984--16472330	188	1.8	188	86	2	509	26	28	25	19	1.99
16472208--16472832	159	3.9	159	78	2	587	24	30	26	19	1.98
16473554--16473603	26	1.9	26	87	0	73	28	22	20	30	1.98
16473896--16473948	26	2.0	26	88	0	79	24	16	28	30	1.97
16474094--16474144	26	2.0	26	92	7	86	31	11	25	31	1.92
16474587--16474647	26	2.3	26	85	0	95	24	19	26	29	1.99
16475467--16475829	158	2.3	156	77	6	388	22	27	28	21	1.99
16476508--16476560	26	2.0	26	92	7	90	28	20	24	26	1.99
16476851--16476903	26	2.0	26	92	0	88	28	18	24	28	1.98
16476692--16477259	197	3.0	185	79	7	618	22	29	27	20	1.98
16479337--16479394	24	2.4	24	85	5	82	25	34	18	20	1.96
16482818--16482870	26	2.0	26	96	0	97	24	20	28	26	1.99
16484484--16484536	26	2.0	26	96	0	97	24	16	28	30	1.97
16484449--16485345	183	4.7	187	77	8	787	24	27	26	21	1.99
16484680--16484737	26	2.2	27	90	9	93	29	17	22	31	1.96
16484691--16484749	26	2.2	26	81	3	64	32	20	18	28	1.96
16484863--16484915	26	2.0	26	92	0	88	26	20	26	26	1.99
16485060--16485108	26	1.9	25	87	4	71	34	16	18	30	1.93
16484852--16485345	195	2.6	195	79	8	473	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16484449--16485345	379	2.4	379	83	2	1104	24	27	26	21	1.99
16485242--16485294	26	2.0	26	92	0	88	28	18	24	28	1.98
16485566--16485618	26	2.0	26	88	0	79	26	18	26	28	1.98
16486826--16486878	26	2.0	26	89	7	81	30	20	22	26	1.98
16487208--16487260	26	2.0	26	89	7	81	30	18	22	28	1.98
16486471--16487418	380	2.5	372	78	8	939	23	27	26	22	2.00
16487233--16487679	159	2.8	158	78	6	386	23	30	26	19	1.98
16488609--16488661	26	2.0	26	86	13	74	30	24	20	24	1.99
16488989--16489041	26	2.0	26	89	7	81	30	20	22	26	1.98
16489687--16489739	26	2.0	26	85	7	72	30	18	22	28	1.98
16488634--16490264	698	2.3	697	81	2	1896	24	28	26	21	1.99
16490922--16490974	26	2.0	26	92	7	90	28	20	24	26	1.99
16491265--16491317	26	2.0	26	85	0	70	28	20	22	28	1.99
16491460--16491512	26	2.0	26	89	7	81	30	22	22	24	1.99
16491486--16491987	159	3.2	157	81	5	539	24	28	25	21	1.99
16491961--16492013	26	2.0	26	92	0	88	24	18	26	30	1.98
16492050--16492076	13	2.1	13	100	0	54	29	22	40	7	1.81
16492170--16492227	26	2.2	27	84	9	75	29	22	17	31	1.96
16490948--16492692	709	2.5	692	79	5	1850	23	28	25	21	1.99
16493030--16493082	26	2.0	26	88	0	79	24	16	30	28	1.97
16494092--16494144	26	2.0	26	89	7	81	24	22	26	26	2.00
16493999--16494354	196	1.8	197	85	1	500	25	25	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16494287--16494338	26	2.0	26	96	0	95	25	19	25	30	1.98
16494667--16494719	26	2.0	26	89	7	81	30	20	22	26	1.98
16494692--16495139	159	2.8	157	79	7	458	25	30	25	18	1.98
16495133--16495180	21	2.3	21	88	0	69	20	41	12	25	1.87
16497765--16498450	158	4.3	159	77	6	658	23	29	27	19	1.98
16497765--16498450	316	2.2	315	79	5	772	23	29	27	19	1.98
16499150--16499201	26	2.0	26	88	7	79	26	15	30	26	1.96
16499334--16499386	26	2.0	26	88	0	79	26	18	26	28	1.98
16500398--16500450	26	2.0	26	88	0	79	28	20	22	28	1.99
16500536--16500896	158	2.3	158	80	0	400	21	31	26	20	1.98
16501070--16501122	26	2.0	26	85	0	70	26	15	28	30	1.96
16501198--16501238	21	2.0	21	90	0	64	4	46	21	26	1.72
16501787--16501839	26	2.0	26	89	7	81	26	18	26	28	1.98
16501541--16501934	184	2.1	182	84	6	510	22	27	26	22	1.99
16502545--16502902	158	2.3	158	80	5	391	23	29	26	19	1.98
16503020--16503075	26	2.2	26	87	6	78	23	17	26	32	1.97
16504005--16504453	184	2.4	183	79	5	442	23	28	25	23	2.00
16504953--16505004	26	2.0	26	88	7	79	28	17	25	28	1.97
16506178--16506558	158	2.4	158	79	4	403	24	30	26	18	1.98
16508004--16508055	26	2.0	26	88	0	77	26	17	23	32	1.96
16509082--16509134	26	2.0	26	88	0	79	28	20	24	26	1.99
16513567--16513619	26	2.0	26	88	0	79	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16514624--16514676	26	2.0	26	92	0	88	24	16	26	32	1.97
16514833--16514883	26	2.0	26	88	0	75	31	11	25	31	1.92
16515359--16515411	26	2.0	26	92	0	88	24	18	28	28	1.98
16516391--16516442	26	2.0	26	92	0	86	25	17	28	28	1.97
16516301--16516649	184	1.9	184	86	1	502	24	29	25	20	1.99
16516296--16516692	184	2.2	185	83	1	494	25	29	25	19	1.98
16517282--16517334	26	2.0	26	92	7	90	28	20	24	26	1.99
16517468--16517518	26	2.0	26	92	7	86	29	19	27	23	1.98
16518188--16518240	26	2.0	26	89	7	81	30	18	22	28	1.98
16519578--16519630	26	2.0	26	89	7	81	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100