genome.fa.s113.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  28  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8163499--8163575	38	2.0	38	92	0	127	22	18	28	31	1.97
8167318--8167354	2	19.0	2	91	5	58	54	0	0	45	1.00
8169574--8169710	17	8.4	16	73	19	106	25	5	1	67	1.22
8169564--8169689	33	3.9	33	81	13	113	24	5	1	68	1.20
8169602--8169722	50	2.5	50	78	17	130	24	5	1	67	1.21
8170047--8170083	19	1.9	19	88	0	56	29	8	10	51	1.65
8170159--8170200	14	3.0	14	82	10	59	54	0	45	0	0.99
8170444--8170483	18	2.4	16	84	12	53	15	2	2	80	0.93
8172162--8172237	40	1.9	40	86	10	111	25	25	7	42	1.81
8172185--8172420	114	2.0	118	93	4	408	30	18	9	41	1.82
8175544--8175616	28	2.6	27	80	6	83	73	0	17	8	1.06
8175543--8175625	27	3.0	27	77	12	87	72	0	18	9	1.11
8176920--8176987	31	2.2	31	83	0	82	51	4	1	42	1.31
8179678--8179732	23	2.3	25	78	9	62	25	14	0	60	1.35
8181766--8181871	52	2.0	55	87	12	159	28	20	7	43	1.79
8182977--8183024	13	3.5	13	78	16	53	22	2	2	72	1.05
8185791--8185827	16	2.3	16	95	0	65	27	2	0	70	1.01
8185905--8185964	6	10.2	6	77	16	54	70	0	8	21	1.14
8185885--8185964	41	2.0	41	82	5	99	70	1	8	20	1.21
8185869--8185965	18	5.5	17	69	18	72	69	2	8	20	1.25
8187232--8187308	38	2.0	38	92	0	127	22	18	28	31	1.97
8191047--8191075	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8193294--8193430	17	8.4	16	73	19	106	25	5	1	67	1.22
8193284--8193409	33	3.9	33	81	13	113	24	5	1	68	1.20
8193322--8193442	50	2.5	50	78	17	130	24	5	1	67	1.21
8193767--8193803	19	1.9	19	88	0	56	29	8	10	51	1.65
8195906--8196141	117	2.0	117	97	0	445	30	18	9	41	1.82
8199261--8199352	28	3.3	27	78	4	76	71	0	19	8	1.11
8199260--8199334	28	2.7	27	81	6	87	73	0	18	8	1.07
8199260--8199351	29	3.2	28	78	6	96	72	0	18	8	1.09
8200740--8200821	43	1.9	42	87	2	119	41	10	12	35	1.78
8201135--8201472	82	4.1	82	78	7	305	25	15	19	40	1.90
8201135--8201474	41	8.3	41	78	4	262	25	15	19	40	1.90
8201171--8201465	163	1.8	162	81	7	364	25	14	19	40	1.90
8201152--8201527	41	9.1	41	75	6	251	25	14	20	39	1.90
8201757--8201875	6	19.0	6	76	12	98	21	1	0	75	0.94
8201807--8201895	30	2.8	30	80	10	97	21	4	0	74	1.00
8201760--8201873	36	3.1	35	85	13	151	21	1	0	75	0.95
8201759--8201873	39	3.2	35	81	11	142	21	1	0	75	0.94
8201759--8201875	28	4.4	25	71	19	78	22	1	0	75	0.95
8201815--8201938	16	7.5	17	71	15	82	22	4	0	71	1.10
8201764--8201931	36	4.2	40	75	17	138	22	4	1	72	1.09
8206104--8206138	2	18.0	2	94	5	63	48	0	0	51	1.00
8209462--8209646	91	2.0	91	100	0	370	31	21	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8209972--8210013	20	2.1	20	95	0	75	16	0	64	19	1.30
8209991--8210061	34	2.1	35	86	2	99	9	0	67	22	1.20
8212750--8212987	118	2.1	114	86	7	329	35	12	5	46	1.66
8212750--8212987	58	4.1	58	84	8	297	35	12	5	46	1.66
8213016--8213054	12	3.2	12	82	13	53	69	10	2	17	1.28
8213530--8213555	11	2.4	11	100	0	52	53	7	0	38	1.30
8214173--8214461	44	6.6	43	76	6	233	43	20	13	22	1.86
8214923--8214979	21	2.8	20	89	2	78	36	17	8	36	1.81
8215003--8215081	21	3.8	21	86	3	88	39	11	7	41	1.70
8214884--8215059	80	2.2	81	82	4	214	34	15	10	39	1.82
8215124--8215205	21	3.9	21	85	1	110	39	12	7	41	1.70
8215123--8215205	43	2.0	42	90	2	130	38	13	7	40	1.72
8214923--8215282	121	3.0	122	87	2	512	35	15	10	39	1.81
8215248--8215449	46	4.4	45	80	10	157	33	12	12	41	1.81
8215248--8215449	25	8.8	24	79	12	169	33	12	12	41	1.81
8215316--8215420	21	4.8	21	81	9	129	33	17	10	39	1.84
8215249--8215461	67	3.1	67	81	4	230	33	13	12	41	1.81
8216628--8216668	13	3.4	12	83	9	57	0	19	0	80	0.71
8216628--8216683	24	2.4	24	85	8	71	0	17	0	82	0.68
8216638--8216690	8	6.6	8	77	16	56	0	16	0	83	0.66
8216629--8216690	32	1.9	33	90	3	99	0	17	0	82	0.67
8219439--8219482	17	2.6	16	79	10	52	47	9	20	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8220643--8221003	56	6.2	59	79	10	368	35	11	5	47	1.62
8220597--8220970	116	3.2	116	88	4	526	35	11	7	45	1.68
8221024--8221077	12	4.6	12	82	13	67	75	5	0	18	0.98
8221024--8221083	17	3.5	17	72	20	61	76	5	0	18	0.96
8221345--8221378	16	2.0	18	88	11	54	0	41	0	58	0.98
8221503--8221567	31	2.1	31	88	0	94	50	26	10	12	1.72
8221669--8221699	16	1.9	16	93	0	53	3	9	9	77	1.10
8222135--8222159	2	12.5	2	100	0	50	48	0	0	52	1.00
8225796--8225843	25	1.9	25	83	8	62	50	4	6	39	1.47
8227452--8227730	59	4.7	57	85	7	360	34	13	6	45	1.69
8227452--8227730	118	2.3	118	89	4	420	34	13	6	45	1.69
8227783--8227831	6	8.3	6	78	17	50	83	2	2	12	0.82
8227779--8227831	18	3.0	18	84	13	74	83	1	1	13	0.82
8227743--8227856	18	6.0	18	72	20	72	73	1	7	17	1.14
8227779--8227856	11	7.1	11	73	15	54	78	1	2	17	0.94
8227782--8227856	17	4.5	16	76	17	55	77	1	2	18	0.96
8227865--8227907	4	10.8	4	80	9	52	74	2	0	23	0.93
8228566--8228590	12	2.1	12	100	0	50	28	16	16	40	1.89
8228679--8228712	18	1.9	18	88	5	52	79	5	8	5	1.05
8228891--8228951	6	10.2	6	78	19	65	77	1	1	19	0.95
8228884--8228952	21	3.4	19	80	13	66	75	1	1	21	0.96
8229151--8229364	42	5.1	42	89	3	292	38	23	15	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8229151--8229364	83	2.6	82	85	6	288	38	23	15	22	1.93
8230633--8230672	20	2.0	21	90	5	64	10	12	0	77	0.99
8234593--8234827	60	3.9	58	76	16	246	35	14	8	41	1.77
8234984--8235058	16	4.5	17	79	14	68	76	2	5	16	1.09
8234984--8235058	11	6.8	10	75	14	51	76	2	5	16	1.09
8234984--8235058	5	13.6	5	72	18	51	76	2	5	16	1.09
8234984--8235059	22	3.4	22	70	20	59	76	2	5	15	1.08
8235086--8235131	4	11.0	4	88	6	65	76	2	0	21	0.90
8235086--8235130	13	3.5	13	87	6	74	77	2	0	20	0.87
8239748--8239789	21	2.0	21	100	0	84	23	23	14	38	1.92
8243797--8243830	11	2.9	12	86	8	52	47	0	0	52	1.00
8244520--8244752	128	1.8	130	94	1	416	23	16	15	44	1.85
8249086--8249148	24	2.5	24	79	7	63	39	9	4	46	1.58
8249106--8249158	24	2.2	24	83	10	63	41	5	5	47	1.51
8249862--8250140	41	6.6	41	80	7	297	45	19	13	22	1.85
8249887--8250050	90	1.8	90	90	0	265	47	17	14	21	1.82
8250978--8251120	63	2.3	63	83	2	171	33	27	7	31	1.85
8251714--8251806	16	5.7	15	72	14	53	6	19	0	74	1.03
8254930--8254991	6	10.5	6	80	19	69	17	1	1	79	0.90
8254934--8254991	31	1.9	30	89	10	91	18	1	1	77	0.94
8254930--8255036	37	2.8	37	81	8	101	20	2	1	74	1.03
8254909--8255048	48	2.9	48	72	15	117	21	4	1	72	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8255082--8255121	3	13.7	3	89	5	64	32	0	0	67	0.91
8255206--8255259	17	3.1	18	74	15	51	16	3	3	75	1.08
8255480--8255528	25	2.0	23	88	7	71	36	4	14	44	1.64
8256041--8256083	4	11.0	4	90	5	70	23	0	2	74	0.93
8256111--8256187	6	13.7	6	71	13	56	14	6	1	77	1.02
8256111--8256168	17	3.4	17	72	13	57	13	5	1	79	0.98
8256124--8256176	28	2.0	26	85	10	72	13	5	1	79	0.99
8256042--8256186	16	9.5	15	68	18	61	19	4	4	72	1.18
8256129--8256193	17	3.9	17	80	6	62	13	7	3	75	1.14
8256258--8256286	14	2.0	15	93	6	51	55	3	0	41	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100