genome.fa.s113.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  44  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11224896--11224936	10	4.0	10	84	6	55	53	0	2	43	1.13
11224818--11224933	21	5.8	21	70	21	63	53	0	3	42	1.23
11224943--11224983	17	2.4	17	87	0	55	58	2	2	36	1.24
11224967--11224994	7	4.0	7	100	0	56	57	0	0	42	0.99
11225128--11225177	11	4.6	11	80	12	59	54	2	0	44	1.11
11225194--11225239	18	2.4	18	85	10	56	52	0	4	43	1.21
11225212--11225251	18	2.3	18	87	12	57	57	0	2	40	1.12
11225259--11225419	21	7.7	21	80	5	157	45	1	4	48	1.33
11225194--11225448	21	12.4	20	71	16	130	47	2	3	46	1.34
11225321--11225420	10	9.8	10	70	4	65	47	2	5	46	1.36
11225259--11225419	41	3.9	42	78	7	157	45	1	4	48	1.33
11225592--11225626	17	2.1	16	89	5	52	62	11	2	22	1.41
11227225--11227333	28	3.9	27	78	7	119	51	0	0	46	1.13
11227301--11227377	11	6.6	11	70	14	57	53	1	2	42	1.23
11227297--11227357	17	3.4	17	70	12	50	52	1	3	42	1.27
11227284--11227371	37	2.4	37	85	7	110	52	1	2	44	1.21
11227348--11227486	20	6.7	21	82	4	158	46	2	3	47	1.31
11227853--11227986	30	4.5	29	78	4	117	39	7	1	51	1.39
11228998--11229037	2	20.0	2	100	0	80	50	0	0	50	1.00
11233589--11233621	2	16.5	2	100	0	66	48	0	51	0	1.00
11233964--11233992	7	4.1	7	100	0	58	58	0	0	41	0.98
11238612--11238641	14	2.1	14	93	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11243218--11243249	9	3.4	9	91	8	55	40	0	0	59	0.97
11243219--11243249	10	3.2	10	90	9	55	38	0	0	61	0.96
11245085--11245398	157	2.0	157	100	0	628	24	14	14	46	1.82
11245976--11246026	19	2.6	20	81	9	52	33	1	5	58	1.33
11245989--11246026	20	1.9	20	84	10	51	36	2	5	55	1.37
11247115--11247256	51	2.8	52	82	5	157	37	14	9	39	1.77
11248427--11248461	10	3.4	10	88	4	52	62	2	2	31	1.24
11249096--11249124	4	7.5	4	92	7	51	48	0	0	51	1.00
11249464--11249628	43	3.8	43	77	7	163	39	14	13	32	1.86
11249460--11249645	87	2.2	86	79	4	205	38	16	13	31	1.87
11249643--11250122	200	2.4	200	80	4	509	39	16	13	30	1.87
11250182--11250332	66	2.3	66	82	2	169	39	10	15	35	1.82
11250179--11250332	33	4.7	33	75	7	143	38	10	14	35	1.81
11254520--11254635	62	1.9	62	83	5	155	24	11	6	58	1.54
11254550--11254579	13	2.4	13	94	5	53	23	6	0	70	1.11
11254753--11254810	26	2.2	26	81	6	64	32	13	10	43	1.78
11254899--11254961	24	2.5	25	82	10	67	50	4	4	39	1.44
11259197--11259225	14	2.1	14	93	6	51	27	0	37	34	1.57
11264875--11264907	14	2.4	14	100	0	66	81	0	12	6	0.85
11266948--11267092	66	2.1	67	88	3	211	49	4	28	17	1.65
11268074--11268207	66	2.0	66	89	0	205	23	13	14	49	1.78
11269023--11269063	3	13.7	3	100	0	82	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11269067--11269100	3	11.3	3	93	0	59	2	0	29	67	1.05
11269691--11269728	3	12.7	3	100	0	76	65	0	0	34	0.93
11270517--11270553	19	2.1	19	85	10	51	32	2	10	54	1.49
11273834--11273872	11	3.5	11	86	6	51	66	2	2	28	1.18
11275480--11275537	19	2.8	22	82	12	61	58	0	0	41	0.98
11277269--11277318	3	16.7	3	95	0	91	32	0	2	66	1.03
11278254--11278288	11	3.1	11	84	8	52	48	0	0	51	1.00
11280790--11280852	16	3.9	16	75	8	56	19	6	31	42	1.76
11280795--11280863	33	2.1	33	83	5	86	15	4	31	47	1.65
11282193--11282248	24	2.3	23	79	8	67	17	5	44	32	1.72
11282300--11282340	12	3.3	12	96	3	73	0	0	14	85	0.60
11282299--11282340	13	3.3	13	93	6	77	0	0	14	85	0.59
11282500--11283320	48	17.0	46	82	9	845	35	25	11	27	1.90
11282500--11283319	97	8.5	95	87	4	984	35	25	11	27	1.90
11282500--11283323	96	8.5	97	87	4	1044	35	25	11	27	1.90
11295393--11295450	16	3.5	16	72	9	62	18	3	27	50	1.63
11295386--11295461	34	2.2	34	97	0	143	15	2	32	48	1.59
11296614--11296646	17	1.9	17	100	0	66	0	0	15	84	0.61
11296814--11296866	24	2.2	23	80	9	61	18	5	43	32	1.74
11297794--11297872	34	2.3	33	75	10	79	35	8	8	46	1.66
11301589--11301621	11	2.8	12	86	9	50	30	0	0	69	0.88
11302249--11302303	23	2.4	24	79	14	62	1	3	18	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317940--11318024	34	2.5	34	79	11	93	36	5	10	47	1.63
11318145--11318175	16	1.9	16	93	0	53	35	0	0	64	0.94
11318703--11318735	12	2.6	13	90	4	50	21	3	0	75	0.93
11319663--11319710	19	2.5	19	79	0	60	45	10	4	39	1.58
11320372--11320423	25	2.1	25	88	0	77	55	3	1	38	1.29
11320946--11320971	3	8.7	3	100	0	52	69	0	0	30	0.89
11325400--11325862	156	2.9	156	93	2	773	37	17	15	29	1.91
11325899--11325941	11	3.8	12	87	9	63	83	4	0	11	0.78
11326933--11326996	23	2.6	25	75	20	64	62	6	0	31	1.20
11327233--11327359	1	127.0	1	75	0	83	6	0	8	85	0.76
11327224--11327360	17	8.5	16	80	14	140	6	0	9	83	0.79
11327224--11327360	8	17.0	8	78	11	120	6	0	9	83	0.79
11327366--11327867	41	12.1	41	88	3	686	36	25	15	22	1.94
11327366--11327867	83	6.1	83	90	3	710	36	25	15	22	1.94
11329076--11329106	8	3.9	8	95	0	53	9	16	0	74	1.07
11329093--11329155	16	3.7	18	75	18	62	6	19	0	74	1.02
11332826--11333290	156	2.9	160	93	1	758	38	17	15	29	1.90
11333310--11333352	16	2.6	16	77	3	50	76	9	2	11	1.10
11333327--11333357	11	2.8	11	90	0	53	83	6	0	9	0.79
11334339--11334402	23	2.6	25	75	20	64	62	6	0	31	1.20
11335132--11335178	17	2.8	17	84	9	53	29	4	0	65	1.11
11335154--11335214	21	2.8	22	80	11	81	27	6	1	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11336143--11336347	60	3.4	60	84	7	263	47	5	7	38	1.57
11346388--11346418	15	2.1	15	93	0	53	51	3	19	25	1.62
11346743--11346772	10	3.0	10	90	0	51	83	0	6	10	0.81
11347773--11347912	42	3.3	42	81	6	167	27	11	20	41	1.86
11347811--11348244	43	10.2	41	78	10	279	25	14	20	39	1.90
11347888--11348248	41	8.5	43	81	9	336	24	15	20	39	1.91
11347888--11348248	84	4.2	84	78	12	314	24	15	20	39	1.91
11348903--11348933	11	2.8	11	90	0	53	38	6	6	48	1.55
11349436--11349486	4	13.5	4	93	6	65	25	0	0	74	0.82
11349661--11349700	16	2.4	16	88	12	55	45	2	0	52	1.14
11349545--11349919	119	3.2	118	84	8	494	48	6	9	36	1.60
11349544--11349925	179	2.1	176	86	7	527	48	6	8	36	1.61
11349545--11349925	60	6.4	59	85	7	495	48	6	8	36	1.61
11351143--11351182	21	1.9	21	84	0	53	62	15	0	22	1.32
11351497--11351551	29	1.9	29	81	3	67	25	9	5	60	1.49
11351517--11351562	24	1.9	24	90	0	74	23	6	6	63	1.43
11353933--11353958	11	2.4	11	100	0	52	26	0	15	57	1.38
11353997--11354107	52	2.1	52	85	6	145	44	5	22	27	1.75
11355144--11355171	2	14.0	2	100	0	56	50	0	0	50	1.00
11355171--11355204	2	17.0	2	100	0	68	50	0	50	0	1.00
11355779--11355848	28	2.4	28	83	9	77	40	1	1	57	1.17
11358436--11358470	3	11.7	3	100	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11358826--11358870	22	2.0	22	100	0	90	51	8	0	40	1.33
11359326--11359355	4	7.5	4	92	0	51	0	30	23	46	1.52
11362028--11362053	2	13.0	2	100	0	52	50	0	0	50	1.00
11362188--11362218	5	6.0	5	96	3	53	77	0	3	19	0.90
11362540--11362572	16	2.0	17	88	5	50	48	0	0	51	1.00
11363987--11364028	21	2.0	22	85	4	59	35	2	0	61	1.09
11366388--11366592	101	2.0	101	93	0	347	35	18	11	35	1.86
11367746--11367790	21	2.1	22	87	4	65	55	0	2	42	1.12
11368416--11368453	13	2.7	14	88	8	51	52	2	0	44	1.14
11369005--11369071	33	2.1	33	83	8	84	41	0	1	56	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100