genome.fa.s113.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  92  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18253565--18253605	19	2.2	20	86	8	59	9	21	0	68	1.18
18255334--18255382	21	2.3	21	100	0	98	24	26	32	16	1.96
18268161--18268223	29	2.2	28	75	13	65	34	1	1	61	1.15
18268347--18268385	13	2.9	14	88	11	64	20	0	0	79	0.73
18268347--18268390	13	3.4	13	84	12	63	20	0	2	77	0.88
18268514--18268552	13	2.9	13	80	3	51	51	2	0	46	1.14
18268553--18268579	8	3.4	8	100	0	54	25	0	0	74	0.83
18268764--18268860	26	3.6	25	76	10	77	71	7	3	18	1.23
18269178--18269277	51	2.0	51	88	4	148	40	21	11	28	1.87
18269282--18269312	10	3.1	10	90	0	53	51	12	0	35	1.40
18269698--18269724	12	2.2	12	100	0	54	7	7	0	85	0.75
18271253--18271297	9	4.8	9	81	8	54	84	4	8	2	0.84
18272822--18272962	33	4.2	33	71	18	94	24	19	9	46	1.79
18272739--18273461	106	6.9	103	76	8	492	21	20	10	47	1.80
18273040--18273110	33	2.1	34	84	2	90	19	25	9	45	1.81
18273084--18273234	36	4.2	36	70	8	121	19	18	11	49	1.78
18273298--18273383	35	2.4	35	84	1	109	19	25	11	43	1.85
18273317--18273612	142	2.1	141	82	4	364	19	20	10	49	1.77
18273417--18273507	36	2.5	37	83	5	112	18	19	7	53	1.68
18273403--18273535	37	3.6	38	80	7	132	19	20	7	52	1.70
18273559--18273820	36	7.4	36	65	14	116	19	20	11	48	1.79
18273373--18273635	142	1.9	142	86	1	375	20	19	9	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18273191--18273717	247	2.1	246	81	7	593	20	21	9	48	1.77
18273455--18273821	105	3.5	105	83	2	411	19	20	10	49	1.78
18274214--18274244	16	2.0	15	93	6	53	35	0	0	64	0.94
18275863--18275918	28	2.0	28	86	10	80	42	32	1	23	1.64
18275893--18275992	30	3.3	31	74	10	82	47	33	3	17	1.63
18276020--18276052	16	2.0	17	94	5	59	60	24	0	15	1.35
18276070--18276125	30	1.9	29	82	13	71	48	33	0	17	1.48
18278218--18278315	42	2.3	42	82	8	119	20	23	6	50	1.71
18278695--18278746	10	5.1	10	82	13	61	84	1	0	13	0.70
18278689--18278746	21	2.6	22	78	13	66	82	3	0	13	0.79
18279757--18279800	21	2.2	20	83	4	52	27	2	2	68	1.14
18292164--18292520	50	7.2	50	77	7	302	29	12	20	37	1.89
18292427--18292526	52	2.0	49	80	9	112	28	12	21	39	1.88
18296465--18296687	3	77.0	3	71	14	112	33	2	4	59	1.32
18296512--18296595	10	8.8	10	83	7	86	38	0	8	53	1.31
18297513--18297589	18	4.2	17	71	26	59	16	0	9	74	1.07
18298500--18298611	25	4.2	25	69	14	73	20	10	4	64	1.42
18298522--18298615	38	2.5	37	84	5	107	20	9	3	67	1.34
18301732--18301762	16	1.9	16	93	0	53	87	0	9	3	0.66
18302582--18302810	120	1.9	120	81	3	282	19	22	13	44	1.85
18302985--18303239	120	2.1	120	81	3	291	22	21	12	43	1.86
18303456--18303598	3	50.0	3	77	14	79	32	5	4	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18304444--18304506	5	12.8	5	71	15	51	15	3	3	77	1.02
18304448--18304501	16	3.7	15	79	13	51	16	3	3	75	1.08
18306244--18306315	38	1.9	36	88	5	108	55	23	0	20	1.43
18306609--18306657	3	16.3	3	100	0	98	67	0	0	32	0.91
18307236--18307274	7	5.6	7	90	0	51	17	0	2	79	0.84
18307239--18307349	14	7.7	14	66	13	55	27	1	1	69	1.08
18307287--18307417	3	40.7	3	72	19	63	30	3	0	65	1.13
18307279--18307420	7	19.6	7	71	19	89	30	2	1	65	1.15
18307293--18307392	35	2.7	36	80	13	107	31	3	1	65	1.15
18307339--18307431	17	5.4	17	73	17	68	30	4	1	64	1.19
18308285--18308427	6	23.3	6	76	11	80	23	2	2	72	1.06
18308305--18308352	3	15.7	3	86	4	69	27	0	0	72	0.84
18308285--18308432	22	6.5	22	72	18	90	22	2	2	72	1.05
18308384--18308432	5	9.4	5	79	16	55	18	2	0	79	0.83
18308378--18308437	12	5.2	12	84	11	65	18	5	0	76	0.96
18308450--18308650	58	3.4	58	92	3	323	43	6	12	37	1.69
18311638--18311678	17	2.4	17	84	11	57	82	0	9	7	0.83
18311693--18312031	118	2.9	118	87	5	465	37	13	7	41	1.72
18311693--18312030	60	5.7	59	86	4	443	37	13	7	42	1.72
18314546--18314590	3	15.0	3	95	0	54	24	0	8	66	1.20
18315233--18315305	38	1.9	38	88	5	112	39	4	1	54	1.28
18317107--18317138	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18318954--18319066	57	2.0	54	88	5	163	22	10	16	50	1.76
18322834--18322864	2	15.5	2	100	0	62	0	48	0	51	1.00
18324442--18324467	5	5.2	5	100	0	52	80	0	0	19	0.71
18324497--18324529	14	2.4	14	90	5	50	48	0	0	51	1.00
18324641--18324698	28	2.0	30	80	12	68	58	1	0	39	1.08
18325992--18326143	76	2.0	76	97	0	286	37	9	13	38	1.78
18327081--18327136	4	13.8	4	81	3	58	17	1	7	73	1.15
18327068--18327136	12	5.6	12	81	5	66	20	1	7	71	1.18
18345180--18345265	11	8.2	11	68	19	58	54	1	2	41	1.20
18345174--18345216	19	2.2	20	83	4	52	53	0	2	44	1.13
18345197--18345265	21	3.2	21	80	10	77	56	1	1	40	1.17
18353289--18353321	14	2.4	14	94	0	57	33	12	6	48	1.65
18354447--18354497	24	2.0	25	88	7	77	45	17	5	31	1.72
18361870--18361920	26	1.9	27	92	4	86	52	3	13	29	1.58
18376476--18376524	20	2.5	20	100	0	98	20	10	18	51	1.75
18376766--18376791	3	8.7	3	100	0	52	34	0	0	65	0.93
18377588--18377613	11	2.4	11	100	0	52	15	0	7	76	0.99
18379809--18379845	17	2.2	16	90	4	56	27	0	0	72	0.84
18379949--18380023	32	2.3	33	81	6	89	70	1	5	22	1.15
18380007--18380049	22	2.0	22	81	9	52	72	9	4	13	1.26
18385531--18385601	13	5.7	13	69	20	53	73	0	19	7	1.06
18386089--18386265	3	62.7	3	76	10	124	31	6	3	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18386086--18386132	19	2.4	19	85	3	67	23	2	2	72	1.06
18397754--18397883	52	2.5	52	80	2	134	56	10	15	18	1.67
18399421--18399546	50	2.5	50	85	5	157	34	3	3	58	1.32
18399421--18399546	3	44.7	3	79	12	115	34	3	3	58	1.32
18400426--18400480	25	2.2	24	75	9	56	16	3	5	74	1.15
18402011--18402063	5	10.6	5	76	15	56	18	3	1	75	1.05
18402703--18402762	26	2.3	26	82	0	66	21	3	5	70	1.22
18410808--18410882	37	2.0	37	100	0	150	33	26	10	29	1.90
18416464--18416541	37	2.1	37	95	0	138	44	14	10	30	1.78
18422181--18422267	33	2.6	33	74	3	86	33	3	17	45	1.65
18427871--18427905	15	2.3	15	95	0	61	74	0	0	25	0.82
18427948--18427992	18	2.5	18	100	0	90	26	0	33	40	1.57
18428576--18428613	8	4.9	8	87	6	60	78	0	10	10	0.95
18428575--18428613	15	2.5	15	91	4	60	79	0	10	10	0.94
18428822--18428874	26	2.1	24	82	6	61	47	5	7	39	1.56
18429004--18429123	56	2.1	57	81	6	136	50	9	14	25	1.72
18432964--18433019	16	3.4	16	82	2	58	76	0	16	7	0.99
18432990--18433030	9	4.7	9	79	14	50	78	0	7	14	0.96
18433642--18433819	70	2.5	70	78	7	157	34	11	23	30	1.90
18434223--18434264	21	2.0	22	85	4	59	40	19	9	30	1.83
18434225--18434910	46	14.8	46	83	6	637	38	10	13	37	1.80
18434225--18434910	92	7.4	92	82	6	726	38	10	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18434296--18434954	117	5.7	115	79	9	643	38	9	14	37	1.79
18434223--18434754	163	3.3	161	81	6	588	37	10	13	37	1.80
18434225--18434907	138	4.9	138	78	7	745	38	10	14	37	1.80
18434925--18434990	33	2.1	32	85	5	89	40	9	10	39	1.71
18435450--18435676	43	5.4	42	79	7	169	26	11	13	48	1.77
18435576--18435712	43	3.2	43	83	1	159	25	9	13	51	1.72
18435451--18435688	124	1.9	125	82	7	286	26	12	13	47	1.78
18435862--18435902	8	5.1	8	82	11	57	82	0	0	17	0.66
18435865--18435902	12	3.2	12	86	13	53	84	0	0	15	0.63
18435861--18435904	16	2.8	16	82	10	63	79	0	0	20	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100