genome.fa.s113.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  59  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13733585--13733665	36	2.2	36	88	0	117	22	13	23	40	1.89
13733729--13733763	18	1.9	18	88	0	52	31	28	5	34	1.81
13734030--13734133	44	2.4	44	88	0	145	30	20	17	31	1.95
13734036--13734112	22	3.5	22	74	0	73	31	22	15	31	1.95
13734060--13734133	22	3.4	22	76	0	76	29	18	18	32	1.96
13734116--13734178	22	2.9	22	67	9	56	30	20	19	30	1.97
13734053--13734194	44	3.2	45	79	9	132	31	20	16	30	1.95
13734599--13734821	43	5.2	43	79	6	222	27	13	18	39	1.89
13734640--13734821	85	2.1	85	84	7	228	27	14	19	39	1.90
13735075--13735121	14	3.5	14	80	11	53	19	2	8	70	1.24
13735074--13735119	12	3.4	14	79	14	51	19	2	6	71	1.18
13735091--13735123	12	2.8	12	86	4	50	18	3	9	69	1.28
13735742--13735802	16	3.8	16	74	10	61	31	4	11	52	1.58
13735810--13735882	20	3.7	20	88	0	83	32	6	9	50	1.61
13735902--13736030	53	2.4	53	85	0	195	29	5	9	55	1.54
13735980--13736021	21	2.0	22	95	4	77	26	4	11	57	1.54
13736083--13736146	32	1.9	35	87	9	98	28	3	14	54	1.55
13736176--13736230	24	2.3	23	81	9	65	34	5	9	50	1.57
13736311--13736371	24	2.7	23	81	16	67	32	4	13	49	1.63
13736342--13736444	20	5.4	20	73	13	74	33	5	9	50	1.59
13736332--13736418	40	2.2	40	83	4	106	34	4	6	54	1.48
13738879--13738907	11	2.5	12	94	5	51	0	13	0	86	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13739792--13739836	24	1.9	24	86	4	65	44	6	0	48	1.29
13739798--13739845	24	2.0	24	84	8	62	45	8	0	45	1.33
13739999--13740029	16	2.0	15	93	6	53	58	0	0	41	0.98
13740418--13740474	17	3.8	17	70	27	56	38	1	0	59	1.08
13740385--13740474	47	2.0	45	82	8	110	41	1	2	55	1.19
13740600--13740625	2	13.0	2	100	0	52	50	0	0	50	1.00
13750548--13750586	20	2.0	20	89	0	60	28	0	23	48	1.51
13750852--13750898	21	2.2	22	84	3	60	38	14	12	34	1.85
13753814--13753903	45	2.0	45	91	0	144	32	11	10	46	1.72
13755355--13755404	22	2.3	22	83	13	59	24	4	6	66	1.32
13756097--13756328	59	3.9	59	75	12	224	48	6	11	33	1.65
13756107--13756519	59	6.8	58	71	15	187	48	7	10	33	1.65
13756320--13756352	15	2.3	15	89	5	50	63	9	0	27	1.24
13756349--13756521	59	2.9	61	81	6	208	49	6	9	33	1.63
13759923--13760113	59	3.2	59	86	5	267	34	11	8	45	1.72
13760025--13760218	105	1.8	105	89	4	302	36	9	8	45	1.68
13760113--13760258	59	2.5	59	90	2	231	34	10	7	47	1.66
13760275--13760332	14	4.2	14	76	8	57	77	1	6	13	1.05
13760282--13760332	17	2.9	17	76	21	52	78	1	5	13	1.02
13760319--13760357	17	2.4	16	83	8	51	71	0	5	23	1.05
13761230--13761290	26	2.5	23	75	15	59	70	3	4	21	1.21
13761332--13761382	15	3.4	16	79	10	56	58	5	0	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13761683--13762018	41	8.1	41	89	3	480	36	22	16	23	1.94
13761683--13762018	83	4.1	82	90	4	507	36	22	16	23	1.94
13761683--13762018	124	2.7	122	89	3	503	36	22	16	23	1.94
13763245--13763299	6	8.0	7	82	10	53	3	12	0	83	0.77
13763244--13763326	22	4.1	21	74	22	70	9	14	0	75	1.03
13763253--13763298	10	4.5	10	83	10	58	2	10	0	86	0.64
13763261--13763296	17	2.2	17	95	5	65	0	11	0	88	0.50
13764140--13764188	23	2.0	26	84	15	68	51	24	8	16	1.71
13764150--13764198	23	2.1	23	81	7	55	57	20	10	12	1.64
13767138--13767367	59	3.9	58	89	6	338	34	11	6	47	1.64
13767133--13767367	118	2.0	118	90	3	375	34	11	7	46	1.67
13767375--13767432	14	4.2	14	76	8	57	77	1	6	13	1.05
13767382--13767432	17	2.9	17	76	21	52	78	1	5	13	1.02
13767419--13767456	16	2.4	16	83	12	51	73	0	2	23	0.95
13767836--13767874	20	2.0	20	85	10	53	33	12	28	25	1.93
13768422--13768472	15	3.4	16	79	10	56	58	5	0	35	1.22
13769167--13769205	19	2.1	18	90	4	60	35	0	0	64	0.94
13769173--13769213	19	2.2	19	86	0	55	43	0	0	56	0.99
13770242--13770277	18	2.0	18	94	0	63	44	2	0	52	1.15
13773322--13773384	9	6.6	9	75	10	54	73	1	1	23	1.01
13773323--13773387	19	3.4	18	78	21	69	73	1	1	23	1.00
13773323--13773390	21	3.3	21	73	18	63	73	1	1	23	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13773691--13773734	18	2.5	17	82	13	54	68	2	2	27	1.14
13787626--13787971	172	2.0	171	92	3	572	43	12	17	26	1.85
13788055--13788096	18	2.3	19	80	12	52	30	11	11	45	1.77
13788250--13788623	48	7.6	48	77	9	333	34	13	14	37	1.86
13790771--13790795	9	2.8	9	100	0	50	12	0	0	88	0.53
13790922--13791017	40	2.4	41	78	18	105	69	2	7	20	1.23
13791526--13791581	25	2.3	24	81	3	67	55	5	1	37	1.33
13796085--13796140	13	4.2	13	78	15	53	21	5	0	73	1.03
13796074--13796117	23	1.9	23	86	9	63	20	2	0	77	0.88
13796079--13796149	23	3.1	22	74	8	54	19	4	1	74	1.06
13796071--13796151	9	8.8	9	73	10	56	19	3	1	75	1.02
13795871--13796663	402	2.0	400	97	0	1505	36	6	7	49	1.57
13796486--13796515	13	2.2	14	94	5	53	20	3	0	76	0.92
13796487--13796536	13	3.8	13	80	17	50	22	6	0	72	1.07
13796476--13796519	23	1.9	23	86	9	63	20	2	0	77	0.88
13797482--13797515	15	2.2	15	89	5	50	8	8	0	82	0.85
13797607--13797705	4	25.5	4	71	10	62	70	6	4	19	1.24
13797583--13797630	20	2.4	19	82	10	51	79	4	4	12	1.02
13797639--13797690	15	3.4	15	89	10	79	67	3	3	25	1.25
13797928--13798410	44	10.6	45	74	11	256	44	15	11	28	1.81
13798121--13798237	58	2.0	59	86	1	164	44	10	13	31	1.77
13798212--13798410	90	2.2	88	83	7	251	47	15	11	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13806554--13806593	19	2.1	19	90	0	62	50	0	0	50	1.00
13806585--13806635	25	2.0	25	84	7	66	64	0	0	35	0.94
13810601--13811068	230	2.0	232	94	0	814	37	12	7	42	1.70
13811872--13811906	12	2.9	12	82	0	52	51	11	0	37	1.38
13812206--13812238	14	2.3	15	89	5	50	9	9	0	81	0.87
13812321--13812405	8	10.6	8	74	13	59	74	8	2	15	1.16
13812333--13812413	4	20.5	4	75	7	67	72	6	3	17	1.19
13815159--13815200	16	2.6	16	85	7	50	38	0	0	61	0.96
13824689--13824720	13	2.6	13	90	9	50	25	25	21	28	1.99
13832545--13833659	556	2.0	558	89	2	1697	30	13	14	41	1.85
13847535--13847607	32	2.3	32	95	0	128	19	13	24	42	1.87
13848765--13850495	866	2.0	867	92	0	2874	32	12	14	39	1.84
13863921--13863974	26	2.0	28	85	7	76	64	5	5	24	1.36
13865397--13865499	54	1.9	54	84	2	136	48	9	3	37	1.55
13872756--13872787	15	2.1	15	100	0	64	46	18	6	28	1.73
13875492--13875535	18	2.4	18	84	0	61	72	20	2	4	1.13
13876792--13876831	17	2.5	17	88	8	57	65	5	0	30	1.14
13883837--13884115	59	4.7	57	85	9	373	34	13	7	44	1.73
13883837--13884115	118	2.4	118	96	1	506	34	13	7	44	1.73
13884153--13884194	21	2.0	22	90	4	68	78	2	9	9	1.05
13884798--13884846	24	2.0	24	84	7	64	59	16	2	22	1.47
13885098--13885151	18	3.0	19	74	17	53	75	5	3	14	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13885153--13885193	12	3.6	12	78	21	52	60	7	7	24	1.48
13885228--13885272	23	2.1	23	84	12	60	64	2	2	31	1.18
13885341--13885415	6	12.0	6	77	16	73	77	1	1	20	0.92
13885334--13885415	26	3.2	26	77	22	93	76	1	1	20	0.92
13885334--13885415	32	2.6	31	79	11	103	76	1	1	20	0.92
13885646--13886123	41	11.6	41	86	1	620	38	23	16	21	1.93
13885645--13886123	204	2.3	206	88	2	712	38	23	16	21	1.93
13886421--13886502	43	1.9	42	85	7	112	34	15	12	37	1.85
13886686--13886726	22	1.9	21	95	5	73	34	19	9	36	1.85
13887802--13887858	26	2.2	26	82	17	66	8	14	0	77	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100