genome.fa.s113.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  53  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12778611--12778672	28	2.2	28	85	0	79	59	4	6	29	1.43
12779074--12779105	13	2.5	13	95	5	57	40	15	6	37	1.73
12784048--12784078	12	2.6	12	94	0	53	38	0	9	51	1.35
12784477--12784522	14	3.3	14	93	0	74	15	41	23	19	1.89
12784811--12784846	19	1.9	18	88	5	54	83	5	0	11	0.80
12784641--12785015	195	1.9	195	84	9	498	48	6	9	36	1.61
12786590--12786651	20	3.0	21	79	6	65	75	0	14	9	1.03
12787017--12787111	8	10.6	8	69	27	50	78	0	16	4	0.89
12787018--12787118	11	8.2	12	70	24	61	78	0	16	4	0.92
12787018--12787130	16	6.7	16	71	19	70	77	0	16	5	0.94
12787067--12787138	37	1.9	37	83	8	92	76	0	18	5	0.97
12787031--12787130	29	3.5	28	74	20	91	77	0	18	5	0.95
12787017--12787130	29	4.2	26	71	23	83	78	0	16	5	0.93
12787833--12787876	23	1.9	23	85	0	61	45	0	22	31	1.53
12788244--12788323	25	3.4	25	72	19	89	41	10	13	35	1.78
12788235--12788612	46	8.5	46	82	10	448	36	10	15	37	1.82
12788265--12788665	67	6.1	65	73	16	292	35	10	15	38	1.82
12788318--12788402	42	2.0	43	83	2	109	35	7	15	42	1.74
12788360--12788633	21	12.5	21	75	16	209	36	11	15	36	1.84
12788398--12788469	36	2.0	36	91	0	117	40	11	15	33	1.82
12788775--12788816	20	2.1	20	90	0	66	35	11	16	35	1.86
12789092--12789280	41	4.5	42	83	4	213	22	11	20	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12789092--12789281	83	2.3	83	87	2	265	22	11	20	45	1.83
12790271--12790297	8	3.4	8	100	0	54	88	0	0	11	0.50
12790276--12790660	195	2.0	194	82	6	467	48	7	9	34	1.63
12794259--12794327	20	3.4	21	80	6	54	52	8	18	20	1.72
12794280--12794327	21	2.3	20	85	3	69	56	4	16	22	1.58
12799087--12799114	14	2.0	14	100	0	56	57	0	0	42	0.99
12799265--12799338	28	2.6	28	76	6	78	45	1	1	51	1.18
12799382--12799415	12	2.8	12	86	4	50	38	0	0	61	0.96
12800282--12800361	36	2.2	36	84	6	101	40	2	2	55	1.27
12800272--12800356	36	2.5	32	75	15	80	43	2	2	51	1.27
12800730--12800794	25	2.7	24	80	15	71	44	0	4	50	1.22
12800761--12800794	12	2.7	13	86	9	52	41	0	5	52	1.25
12803930--12805680	588	3.0	575	85	6	2280	37	10	10	41	1.74
12813102--12813140	19	2.1	19	85	0	51	33	17	0	48	1.48
12815872--12815918	24	1.9	25	86	4	69	46	4	6	42	1.48
12816227--12816315	45	2.0	45	84	4	117	51	7	10	30	1.64
12821861--12822420	44	12.9	43	82	2	528	25	14	15	44	1.85
12821861--12822420	87	6.4	87	81	3	556	25	14	15	44	1.85
12822871--12822911	21	1.9	22	90	5	66	43	0	14	41	1.45
12823491--12823538	24	2.0	24	87	4	69	43	4	8	43	1.53
12824633--12824681	25	2.0	23	81	14	55	8	18	0	73	1.07
12829459--12829654	4	49.2	4	80	12	226	24	21	3	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12831322--12831583	143	1.8	143	81	4	332	31	14	12	41	1.83
12831727--12831881	76	2.0	77	86	3	215	37	15	14	32	1.87
12836430--12836525	40	2.4	39	80	16	101	59	2	4	34	1.28
12836488--12836537	17	2.8	18	79	11	59	64	0	2	34	1.05
12836488--12836541	18	3.1	18	76	13	58	62	0	1	35	1.06
12836531--12836570	21	2.0	20	90	5	62	72	7	2	17	1.19
12837783--12837838	16	3.3	16	77	18	51	78	0	17	3	0.89
12837785--12837839	19	2.8	19	81	13	60	78	0	18	3	0.90
12841612--12841679	34	2.1	32	83	5	82	66	5	8	19	1.40
12847023--12847050	14	2.0	14	100	0	56	21	42	7	28	1.79
12848037--12848090	25	2.2	25	89	0	81	53	7	11	27	1.63
12848163--12848202	16	2.4	17	91	4	64	15	5	2	77	1.04
12849122--12849180	17	3.4	17	77	13	75	49	11	15	23	1.77
12849114--12849181	35	1.9	35	93	0	118	48	11	16	23	1.79
12852059--12852107	15	3.3	15	80	11	64	22	4	28	44	1.71
12852046--12852107	30	2.1	29	87	3	88	19	3	30	46	1.65
12852373--12852416	3	14.7	3	100	0	88	65	0	0	34	0.93
12852415--12852465	3	16.7	3	95	4	93	35	0	0	64	0.94
12853221--12853263	8	4.8	9	78	21	54	30	0	0	69	0.88
12854706--12854759	16	3.2	16	78	5	63	77	0	18	3	0.91
12854710--12854773	33	1.9	33	84	6	85	78	1	17	3	0.96
12855620--12855668	20	2.5	19	80	6	53	2	38	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12857256--12857285	11	2.7	11	94	0	51	90	0	10	0	0.47
12857229--12857272	24	1.9	23	86	9	63	79	6	11	2	1.01
12857246--12857294	24	2.0	25	88	4	73	81	0	12	6	0.86
12858206--12858247	18	2.4	17	84	4	57	40	42	4	11	1.63
12858250--12858284	15	2.3	15	90	0	52	51	34	0	14	1.42
12858350--12858413	26	2.5	25	77	10	67	29	17	7	45	1.76
12859346--12859429	23	3.9	22	75	16	86	1	21	1	76	0.93
12859337--12859431	29	3.4	28	77	17	90	2	22	1	74	0.98
12859349--12859431	29	2.8	30	85	10	100	1	21	1	75	0.93
12859346--12859431	22	4.0	23	78	14	85	1	22	1	75	0.94
12860581--12860617	16	2.3	16	90	0	56	0	16	0	83	0.64
12860581--12860642	7	8.7	7	83	13	56	0	19	0	80	0.71
12860581--12860670	27	3.3	27	76	14	96	1	20	0	78	0.81
12860581--12860652	17	4.3	17	78	19	62	1	19	0	79	0.81
12860606--12860652	24	1.9	25	91	4	78	2	19	0	78	0.85
12860597--12860670	10	7.0	10	78	15	69	1	18	0	79	0.80
12860581--12860662	35	2.4	34	85	8	103	1	20	0	78	0.83
12863681--12863722	14	2.9	14	76	16	50	4	26	0	69	1.08
12865773--12865810	15	2.5	15	86	0	58	26	0	28	44	1.54
12866117--12866180	3	21.0	3	87	3	92	60	0	6	32	1.21
12867525--12868076	144	3.8	143	76	8	460	44	9	11	34	1.74
12867539--12868104	287	2.0	286	79	5	624	43	10	12	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12867833--12868118	144	2.0	145	81	8	343	43	10	12	33	1.77
12868366--12868405	11	3.6	12	77	16	50	45	10	10	35	1.71
12870698--12870757	18	3.0	20	65	20	54	53	5	8	33	1.53
12878385--12878425	21	1.9	22	90	5	66	34	12	14	39	1.84
12881295--12881369	37	2.0	37	86	0	105	34	9	21	34	1.85
12883841--12883919	23	3.4	23	76	11	65	18	2	30	48	1.62
12883855--12883920	15	4.3	15	81	9	71	21	3	30	45	1.67
12883855--12883920	8	8.6	8	79	11	50	21	3	30	45	1.67
12884296--12884325	16	1.9	16	93	6	53	53	10	13	23	1.69
12885165--12885213	10	4.5	11	82	7	57	2	24	0	73	0.94
12885168--12885199	12	2.8	12	90	9	50	3	25	0	71	1.00
12885165--12885214	21	2.3	22	82	3	57	2	24	0	74	0.93
12885560--12886098	288	1.9	288	79	8	614	43	10	12	33	1.77
12886389--12886428	11	3.6	12	77	16	50	45	10	10	35	1.71
12887763--12887796	3	11.3	3	93	0	59	67	2	0	29	1.05
12891291--12891344	28	1.9	28	85	7	74	31	7	11	50	1.66
12891382--12891441	17	3.5	17	83	2	75	41	31	6	20	1.78
12891452--12891481	15	2.0	15	93	0	51	53	30	0	16	1.44
12891852--12891897	20	2.2	20	84	3	56	45	4	6	43	1.49
12892528--12892592	33	1.9	34	85	14	91	1	18	1	78	0.91
12893041--12893118	12	6.7	12	70	20	58	5	16	1	76	1.02
12896922--12896954	13	2.5	13	90	9	50	15	24	0	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12898697--12898781	15	5.7	15	73	15	59	23	1	29	45	1.60
12898750--12898789	15	2.7	15	84	0	62	17	0	37	45	1.49
12899233--12899269	17	2.1	19	90	10	60	18	13	5	62	1.50
12900375--12900643	145	1.9	143	82	3	342	45	12	12	29	1.79
12900538--12900939	143	2.8	142	74	9	361	44	11	11	33	1.76
12907980--12908076	49	2.0	50	93	2	169	50	6	5	38	1.50
12909354--12909392	2	19.5	2	89	0	60	48	0	0	51	1.00
12909386--12909432	23	2.0	23	100	0	94	25	4	25	44	1.72
12910292--12910325	17	2.0	17	88	0	50	32	2	11	52	1.53
12910344--12910384	18	2.3	18	80	15	50	34	12	9	43	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100