genome.fa.s113.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  13  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3360541--3360579	5	8.0	5	88	5	62	79	2	0	17	0.84
3360541--3360587	24	2.0	24	86	0	67	78	6	0	14	0.93
3376812--3376874	18	3.5	18	68	21	51	47	0	3	49	1.17
3377682--3377750	18	3.8	18	75	19	63	36	2	0	60	1.11
3377727--3377797	27	2.7	25	82	12	72	39	1	0	59	1.06
3377735--3377791	21	2.7	21	91	0	87	40	1	0	57	1.09
3379334--3379491	76	2.0	78	92	3	266	25	18	4	51	1.65
3389593--3389633	3	13.7	3	100	0	82	31	0	0	68	0.90
3390110--3390142	12	2.7	13	86	13	52	51	0	48	0	1.00
3390484--3390617	56	2.3	57	79	5	162	47	7	8	36	1.63
3390509--3390661	56	2.7	56	82	8	175	45	5	11	37	1.63
3390676--3390817	59	2.4	57	82	9	160	48	4	11	35	1.58
3401264--3401293	11	2.6	11	94	5	51	90	0	0	10	0.47
3401262--3401330	26	2.8	24	81	16	70	81	0	7	11	0.88
3401889--3401953	24	2.8	24	93	6	107	50	0	24	24	1.49
3402059--3402090	16	2.0	16	93	0	55	21	21	18	37	1.94
3402365--3402485	42	2.8	42	88	2	170	24	9	22	43	1.82
3402351--3402709	44	8.2	44	79	7	257	23	13	19	44	1.86
3402425--3402715	87	3.3	86	77	10	241	24	14	18	42	1.88
3402904--3402971	28	2.5	27	79	11	68	17	1	5	75	1.08
3402951--3403013	13	4.8	13	79	11	65	28	1	1	68	1.08
3402952--3403012	3	19.7	3	75	18	54	29	1	1	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3402953--3403008	27	2.0	28	86	3	78	30	1	1	66	1.12
3403901--3404096	60	3.3	60	80	7	238	49	5	9	36	1.57
3403960--3403996	15	2.3	17	81	13	51	54	0	5	40	1.24
3404275--3404308	17	1.9	17	94	5	59	17	0	0	82	0.67
3404269--3404319	16	3.1	15	81	15	57	13	3	0	82	0.81
3404269--3404331	17	3.7	15	78	17	54	14	3	1	80	0.90
3418344--3418404	28	2.1	29	82	11	81	52	6	4	36	1.49
3418348--3418416	29	2.4	28	81	11	77	49	7	7	36	1.58
3426218--3426264	24	2.0	23	84	12	60	44	19	0	36	1.51
3426659--3426701	20	2.1	21	86	4	61	83	4	0	11	0.78
3436935--3437034	43	2.3	43	96	0	182	28	8	21	43	1.80
3437335--3437381	22	2.1	22	92	0	76	19	21	10	48	1.78
3444356--3444392	18	2.1	18	94	0	65	45	0	0	54	1.00
3444359--3444470	18	5.9	18	69	22	59	42	1	0	55	1.10
3444360--3444464	15	6.6	16	75	17	69	42	0	0	56	1.06
3444378--3444470	45	2.1	45	84	8	118	41	2	0	55	1.11
3444556--3444628	25	2.9	26	87	4	105	47	1	0	50	1.09
3444740--3444775	14	2.5	14	95	4	63	33	5	0	61	1.19
3456259--3456296	18	2.1	19	90	5	60	52	0	0	47	1.00
3472539--3472578	2	19.5	2	94	5	71	2	47	0	50	1.14
3474625--3474666	17	2.5	17	81	11	50	2	28	2	66	1.16
3474879--3474903	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3476540--3476566	2	13.5	2	100	0	54	51	0	0	48	1.00
3482699--3482742	22	2.0	23	82	8	56	65	4	6	22	1.35
3500831--3500855	13	1.9	13	100	0	50	0	8	0	92	0.40
3517090--3517377	147	2.0	147	97	0	540	38	24	10	26	1.88
3523887--3523959	25	2.9	24	80	11	83	49	1	1	47	1.18
3523923--3523962	15	2.6	16	84	4	55	50	2	2	45	1.28
3523991--3524199	108	1.9	109	80	6	246	44	2	2	51	1.27
3524089--3524150	33	1.9	32	90	3	97	46	3	0	50	1.17
3524087--3524199	28	4.1	27	74	17	90	44	1	0	53	1.17
3524122--3524180	21	2.7	23	80	17	72	45	1	0	52	1.10
3524103--3524235	49	2.7	50	76	12	130	44	1	1	52	1.19
3524112--3524199	31	2.9	32	79	15	89	44	1	1	53	1.15
3524104--3524235	18	7.6	18	66	19	59	44	1	1	52	1.19
3540604--3540650	16	2.8	17	80	6	60	51	0	0	48	1.00
3540607--3540642	8	4.5	8	85	0	54	50	0	0	50	1.00
3540695--3540728	17	1.9	18	88	5	52	58	2	2	35	1.28
3541915--3542637	384	1.9	384	78	3	801	28	19	28	23	1.98
3542570--3542791	110	2.0	110	93	0	381	24	22	33	18	1.97
3543043--3543078	2	18.0	2	100	0	72	50	0	0	50	1.00
3543843--3543880	2	19.5	2	83	5	51	44	2	0	52	1.14
3561728--3561805	30	2.6	30	74	6	79	41	0	1	57	1.07
3561768--3561819	22	2.5	22	90	6	81	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3590736--3590783	21	2.2	21	85	10	62	64	0	2	33	1.05
3592183--3592218	2	18.0	2	100	0	72	50	0	0	50	1.00
3597938--3598244	153	2.0	153	91	2	492	31	14	14	39	1.85
3598959--3599055	47	2.0	48	94	2	169	34	14	13	38	1.85
3607854--3607888	2	17.5	2	100	0	70	51	0	0	48	1.00
3607971--3608008	17	2.2	17	90	0	58	44	2	0	52	1.14
3616640--3616698	13	4.3	13	74	17	57	61	1	1	35	1.16
3617347--3617387	18	2.2	20	91	8	68	26	0	4	68	1.10
3623593--3623647	26	2.1	26	83	10	67	14	5	7	72	1.24
3625706--3625733	14	2.0	14	100	0	56	85	0	14	0	0.59
3636097--3636144	22	2.1	23	82	17	57	35	2	4	58	1.29
3639107--3639172	33	2.0	33	100	0	132	27	24	15	33	1.95
3643427--3643788	181	2.0	181	96	0	661	23	17	17	41	1.90
3646006--3646031	1	26.0	1	100	0	52	100	0	0	0	0.00
3650580--3650642	30	2.1	31	88	8	94	58	0	12	28	1.35
3650691--3650734	22	1.9	24	81	9	56	36	6	0	56	1.26
3650776--3650810	18	1.9	18	88	0	52	28	2	0	68	1.04
3652528--3652568	22	1.9	22	90	5	66	41	7	0	51	1.30
3658714--3658926	105	2.0	106	92	0	356	23	7	19	48	1.75
3660602--3660648	23	2.0	23	87	0	67	23	31	17	27	1.96
3672977--3673136	75	2.1	75	98	0	311	31	10	17	40	1.84
3673116--3673156	20	2.0	20	100	0	82	39	0	9	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3673041--3673313	95	3.0	95	88	7	376	32	9	16	41	1.81
3673136--3673461	82	4.2	78	93	5	502	30	11	16	41	1.83
3673136--3673461	157	2.1	155	90	7	509	30	11	16	41	1.83
3674889--3675417	176	3.0	176	95	1	972	37	11	13	38	1.80
3675888--3675914	2	13.5	2	100	0	54	51	0	0	48	1.00
3690011--3690066	18	2.8	19	73	21	53	55	0	0	44	0.99
3690094--3690170	23	3.3	23	79	10	77	41	0	2	55	1.13
3690094--3690174	11	7.1	11	74	23	62	43	0	2	54	1.13
3690451--3690495	14	3.2	14	84	6	56	42	0	8	48	1.34
3690451--3690493	16	2.8	16	80	20	56	44	0	9	46	1.35
3690610--3690676	26	2.6	25	77	15	73	50	0	1	47	1.10
3690720--3690916	15	12.8	15	72	17	147	42	1	1	54	1.16
3690721--3690916	18	10.6	18	76	13	143	42	1	1	54	1.16
3690710--3690913	62	3.4	61	77	14	183	41	1	1	55	1.18
3690741--3690878	23	5.7	23	74	18	102	44	0	1	53	1.14
3690725--3690893	13	13.8	13	68	24	84	44	0	1	53	1.15
3692505--3692548	18	2.5	17	82	7	52	43	0	0	56	0.99
3694794--3695336	268	2.0	268	99	0	1077	43	13	16	26	1.85
3696640--3696666	4	6.8	4	100	0	54	48	0	0	51	1.00
3696636--3696672	12	2.8	14	84	16	51	48	0	0	51	1.00
3698332--3698390	8	7.0	8	77	21	50	25	1	0	72	0.93
3698332--3698383	19	2.7	19	80	11	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3711820--3711879	28	2.1	28	84	0	75	35	1	5	58	1.30
3713158--3713275	55	2.2	54	80	7	123	61	8	7	22	1.49
3718533--3718577	2	22.5	2	100	0	90	51	0	0	48	1.00
3724700--3724741	21	2.0	21	85	0	57	42	2	7	47	1.43
3724709--3724747	21	1.9	21	84	5	53	46	0	2	51	1.14
3735499--3735563	22	3.0	22	72	20	64	72	4	1	21	1.11
3739848--3739953	53	2.0	52	80	12	119	44	1	4	49	1.34
3746172--3746206	17	2.0	17	88	5	52	34	0	0	65	0.93
3750139--3750169	14	2.1	15	94	5	55	45	0	0	54	0.99
3751248--3751307	16	3.7	16	70	12	59	51	5	1	41	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100