genome.fa.s113.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  22  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6294487--6294538	15	3.7	13	79	18	59	19	3	0	76	0.93
6294504--6294536	8	4.2	8	84	7	50	24	0	0	75	0.80
6294566--6294830	57	4.6	55	77	10	269	43	5	12	37	1.67
6294546--6294830	119	2.4	116	83	8	366	45	5	11	37	1.65
6298771--6298808	19	2.0	20	89	5	60	26	7	0	65	1.19
6301484--6301781	150	2.0	149	84	3	384	45	7	10	36	1.67
6302407--6302451	21	2.2	20	88	11	65	40	6	15	37	1.74
6302436--6302951	22	23.9	22	68	12	167	49	4	8	37	1.54
6302436--6302951	44	11.9	44	69	12	201	49	4	8	37	1.54
6302655--6302737	11	7.5	11	79	0	94	55	4	2	37	1.34
6302660--6302826	61	2.7	61	76	8	149	52	4	5	37	1.45
6302804--6302950	65	2.3	66	80	4	165	47	4	9	38	1.57
6303088--6303176	22	4.2	22	78	4	85	49	7	8	33	1.63
6303032--6303176	44	3.4	43	71	9	125	51	6	8	33	1.58
6303305--6303366	22	2.8	22	80	0	61	45	8	4	41	1.55
6303347--6303431	44	1.9	44	85	0	116	50	3	7	38	1.47
6303305--6303405	11	9.2	11	65	4	51	47	4	6	40	1.52
6303336--6303418	22	3.8	22	77	6	78	49	3	8	38	1.51
6303368--6303420	22	2.4	22	83	0	79	49	1	11	37	1.50
6303721--6303808	22	4.0	22	80	0	86	45	5	11	37	1.64
6303708--6303807	44	2.3	45	80	3	105	49	6	10	35	1.61
6304055--6304127	22	3.3	23	77	7	71	56	1	9	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6304139--6304194	22	2.6	21	80	8	67	42	3	14	39	1.63
6304276--6304423	22	6.7	22	74	6	111	44	6	10	39	1.63
6304276--6304432	44	3.6	44	76	5	129	43	5	10	39	1.63
6304766--6304824	22	2.8	21	81	2	64	50	8	5	35	1.55
6304767--6304896	21	6.2	20	76	7	98	46	12	6	34	1.66
6305128--6305219	22	4.2	22	81	5	114	48	4	9	36	1.56
6305380--6305609	22	10.6	21	69	13	81	46	3	9	41	1.52
6305468--6305611	44	3.3	44	78	1	137	48	1	9	40	1.45
6305581--6305680	52	1.9	52	85	0	137	45	7	8	40	1.61
6305975--6306049	21	3.6	21	83	3	89	46	12	6	34	1.67
6316494--6316568	10	7.3	10	70	5	51	62	2	0	34	1.09
6316497--6316558	20	3.0	21	77	15	74	58	3	0	38	1.15
6316503--6316663	9	16.7	9	65	16	56	62	3	1	32	1.20
6316609--6316692	27	2.9	30	77	10	86	70	4	1	23	1.14
6317064--6317139	18	3.8	20	79	12	75	21	2	11	64	1.38
6317113--6317165	25	2.2	24	82	3	61	26	3	3	66	1.26
6320373--6320428	26	2.1	27	83	3	69	37	3	5	53	1.41
6320633--6320662	14	2.2	13	94	5	51	26	0	0	73	0.84
6320633--6320671	15	2.5	16	83	4	53	28	0	0	71	0.86
6320645--6320747	45	2.2	46	84	6	129	31	7	5	55	1.52
6320973--6321048	25	2.9	26	76	9	75	47	6	2	43	1.43
6320956--6321030	27	2.9	25	75	7	69	52	6	1	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6320956--6321060	52	2.0	54	84	3	142	47	7	1	42	1.43
6321090--6321237	73	2.1	71	87	10	212	37	7	4	50	1.49
6321106--6321254	71	2.1	71	79	13	153	37	8	3	51	1.48
6328867--6328910	10	4.5	10	81	13	56	68	2	0	29	1.02
6329989--6330019	2	15.5	2	100	0	62	51	0	0	48	1.00
6330344--6330398	22	2.4	23	84	6	67	45	0	5	49	1.25
6330363--6330406	22	2.0	22	86	0	61	50	2	4	43	1.35
6332905--6332993	26	3.5	26	76	8	78	41	0	1	57	1.06
6338264--6338639	187	2.0	188	92	2	632	36	13	11	38	1.81
6339357--6339388	2	16.0	2	100	0	64	50	0	0	50	1.00
6343301--6343395	43	2.3	42	80	8	104	40	7	8	44	1.63
6343247--6343475	120	1.9	119	82	9	286	36	8	7	46	1.64
6343676--6343745	4	17.2	4	76	8	70	70	7	1	21	1.20
6344887--6344936	17	2.9	18	85	5	59	46	8	14	32	1.73
6344878--6344936	17	3.4	18	76	17	54	45	10	13	30	1.76
6344984--6345126	18	7.6	19	70	9	89	44	8	14	32	1.75
6345089--6345178	10	9.9	9	70	18	62	45	11	12	31	1.76
6345075--6345248	18	9.5	18	68	13	61	46	10	10	31	1.74
6344973--6345179	37	5.6	36	76	9	143	44	9	13	32	1.76
6345319--6345409	42	2.1	43	84	6	114	41	16	12	29	1.84
6347069--6347105	19	1.9	19	94	0	65	10	10	0	78	0.97
6350006--6350069	29	2.2	29	91	2	103	45	6	14	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6352223--6352266	10	4.3	10	82	5	52	0	11	2	86	0.66
6352968--6353156	50	3.8	49	81	7	195	42	15	12	29	1.84
6358827--6358864	20	1.9	20	89	10	60	5	15	0	78	0.91
6358817--6358863	24	2.0	23	83	8	58	6	14	2	76	1.08
6359993--6360018	10	2.6	10	100	0	52	11	19	0	69	1.18
6364112--6364160	20	2.5	20	84	12	66	6	4	12	77	1.09
6369048--6369086	16	2.4	16	95	4	69	48	5	7	38	1.54
6368986--6369078	34	2.7	36	77	12	99	44	10	6	38	1.65
6370937--6371002	21	3.0	20	74	18	60	54	0	1	43	1.09
6370934--6371002	23	3.2	20	71	18	57	55	0	1	43	1.08
6371068--6371208	33	4.4	34	69	23	94	45	2	0	52	1.12
6371132--6371195	26	2.5	26	80	9	78	50	1	0	48	1.10
6377151--6377193	2	21.5	2	90	0	68	46	2	2	48	1.27
6377369--6377405	2	18.5	2	100	0	74	0	51	0	48	1.00
6381383--6381418	3	12.0	3	93	0	63	69	0	0	30	0.89
6382034--6382058	3	8.3	3	100	0	50	32	0	0	68	0.90
6388370--6388429	23	2.6	23	97	0	111	31	21	16	30	1.96
6389165--6389212	2	24.0	2	100	0	96	0	50	0	50	1.00
6396851--6396876	2	13.0	2	100	0	52	50	0	0	50	1.00
6401282--6401314	3	11.0	3	93	0	57	66	3	0	30	1.06
6405873--6405904	2	16.0	2	100	0	64	50	0	0	50	1.00
6422813--6422845	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6423691--6423792	47	2.2	47	82	8	129	41	14	16	27	1.88
6429959--6429993	12	2.9	12	86	0	52	8	25	11	54	1.64
6433147--6433205	28	2.1	28	78	12	68	47	0	1	50	1.11
6434840--6434919	24	3.2	24	74	19	67	50	0	1	48	1.08
6434841--6434926	16	5.4	15	66	20	50	50	0	1	48	1.08
6448642--6448668	4	6.8	4	100	0	54	25	0	0	74	0.83
6457166--6457197	3	10.7	3	100	0	64	65	0	0	34	0.93
6461664--6462218	276	2.0	276	99	0	1092	26	12	22	38	1.90
6463348--6463387	21	2.0	21	85	9	57	40	15	27	17	1.89
6467191--6467236	24	1.9	24	100	0	92	30	19	13	36	1.90
6471478--6471515	3	12.7	3	100	0	76	34	0	0	65	0.93
6475038--6475090	17	3.1	18	86	8	74	50	1	0	47	1.12
6475535--6475578	15	2.8	16	86	6	54	61	0	0	38	0.96
6485026--6485073	3	16.0	3	100	0	96	33	0	33	33	1.58
6485821--6485864	22	2.0	22	86	13	63	72	0	2	25	0.96
6486055--6486079	13	1.9	13	100	0	50	80	4	0	16	0.87
6498359--6498689	163	2.0	165	97	1	621	22	18	16	41	1.89
6500969--6501004	2	18.0	2	100	0	72	50	0	50	0	1.00
6502645--6502721	39	2.0	39	97	0	145	46	10	12	29	1.76
6505839--6505935	29	3.3	28	80	12	106	42	10	13	34	1.78
6511692--6511735	23	1.9	23	100	0	88	34	0	0	65	0.93
6511702--6511749	16	3.0	15	88	11	69	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6511694--6511734	12	3.5	12	75	18	50	34	0	0	65	0.93
6511739--6511780	16	2.4	18	88	11	61	47	0	0	52	1.00
6517201--6517442	125	1.9	125	96	0	448	32	17	18	31	1.95
6518690--6518729	2	20.0	2	89	0	62	50	0	2	47	1.14
6524773--6524959	64	3.0	64	76	6	184	36	8	8	46	1.65
6524740--6524923	63	2.9	62	76	8	165	36	9	8	44	1.68
6525056--6525196	57	2.5	57	97	0	273	39	16	4	39	1.70
6539923--6539962	21	1.9	21	84	0	53	40	2	0	57	1.12
6541287--6541312	2	13.0	2	100	0	52	50	0	0	50	1.00
6556421--6556447	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100