genome.fa.s113.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  20  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5831150--5831179	15	2.0	15	93	0	51	50	0	0	50	1.00
5833869--5833898	4	7.2	4	92	7	51	0	30	0	70	0.88
5835458--5835483	2	13.0	2	100	0	52	50	50	0	0	1.00
5839685--5839746	30	2.1	29	84	3	79	35	11	8	45	1.70
5840984--5841045	23	2.8	23	78	11	67	29	3	1	66	1.17
5841008--5841056	23	2.1	23	84	0	62	36	2	0	61	1.08
5845928--5845962	2	17.5	2	100	0	70	51	0	48	0	1.00
5862855--5862895	21	2.0	20	85	4	55	39	2	4	53	1.35
5863253--5863287	2	17.5	2	100	0	70	51	0	0	48	1.00
5867114--5867173	25	2.4	25	94	5	104	45	8	8	38	1.65
5871657--5871718	27	2.2	29	83	13	78	41	3	1	53	1.27
5872423--5872455	15	2.1	16	94	5	59	78	0	9	12	0.95
5874283--5874329	22	2.1	22	84	0	58	46	0	4	48	1.21
5877049--5877405	179	2.0	179	95	1	644	26	17	19	36	1.94
5877371--5877540	85	2.0	85	100	0	340	34	12	18	34	1.89
5881638--5881695	30	1.9	30	100	0	116	31	20	22	25	1.98
5884759--5884922	54	3.1	54	97	0	303	42	21	9	26	1.83
5885834--5885863	4	7.5	4	92	0	51	23	3	0	73	0.98
5901503--5901576	31	2.5	29	77	14	80	52	2	0	44	1.15
5902646--5902706	28	2.2	29	82	8	81	42	0	6	50	1.28
5903993--5904058	29	2.3	28	76	2	78	60	3	3	33	1.27
5907644--5907681	6	6.3	6	96	0	67	36	44	15	2	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5927402--5927427	11	2.4	11	100	0	52	42	15	11	30	1.82
5931301--5931325	2	12.5	2	100	0	50	52	0	48	0	1.00
5934608--5934656	17	2.8	18	75	6	55	51	2	0	46	1.12
5937943--5937967	2	12.5	2	100	0	50	0	48	0	52	1.00
5941479--5941528	22	2.2	24	79	13	61	48	2	4	46	1.32
5947949--5948010	20	3.1	20	66	0	61	61	1	0	37	1.06
5947948--5948016	14	5.1	14	74	13	72	57	1	0	40	1.07
5948208--5948251	21	2.1	21	83	8	54	52	2	11	34	1.50
5949612--5949650	16	2.4	16	86	0	51	28	15	10	46	1.78
5950952--5950989	17	2.2	17	86	9	51	34	0	0	65	0.93
5951211--5951297	10	8.7	10	71	15	56	59	3	1	35	1.22
5951211--5951323	59	1.9	60	89	5	176	59	4	1	34	1.28
5953836--5953909	27	2.7	27	87	4	105	50	0	0	50	1.00
5953984--5954048	28	2.2	28	84	13	78	50	4	0	44	1.22
5955754--5955779	9	2.9	9	100	0	52	34	0	7	57	1.27
5956724--5956755	15	2.1	16	94	5	57	18	65	0	15	1.27
5958381--5958633	125	2.0	125	92	0	425	28	20	16	34	1.95
5967522--5967555	2	17.0	2	100	0	68	0	50	0	50	1.00
5976034--5976072	15	2.6	16	84	8	55	69	0	0	30	0.89
5977079--5977117	12	3.2	12	81	0	51	51	5	0	43	1.24
5977747--5977772	2	13.0	2	100	0	52	50	0	0	50	1.00
5988381--5988438	28	2.0	29	93	3	100	44	6	6	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5995975--5996008	2	17.0	2	93	0	59	0	52	0	47	1.00
6004668--6004697	1	30.0	1	100	0	60	0	0	0	100	0.00
6009594--6009663	22	3.1	22	84	11	81	60	1	2	35	1.21
6009675--6009854	94	1.9	94	96	1	335	53	13	13	20	1.72
6011384--6011418	18	1.9	18	88	11	54	28	0	2	68	1.04
6011551--6011593	20	2.3	18	84	15	52	46	0	0	53	1.00
6011588--6011662	33	2.3	32	86	8	107	46	2	1	49	1.24
6011644--6011686	19	2.3	19	84	8	52	55	0	2	41	1.12
6018579--6018740	58	2.8	58	85	2	211	38	13	6	40	1.71
6018872--6018917	24	1.9	24	82	8	58	26	19	26	28	1.99
6020570--6020605	11	3.6	10	88	11	56	0	2	8	88	0.59
6020933--6020961	15	2.0	15	93	6	51	51	0	0	48	1.00
6025538--6025567	2	15.0	2	100	0	60	50	0	0	50	1.00
6027334--6027377	19	2.3	19	84	0	52	43	2	9	45	1.48
6027553--6027610	13	4.7	12	80	20	66	56	1	0	41	1.09
6027510--6027629	23	5.1	22	76	14	89	59	1	2	36	1.21
6027643--6027688	19	2.4	19	85	7	58	43	2	0	54	1.12
6027663--6027733	36	2.0	36	81	15	85	47	0	2	49	1.16
6027711--6027773	26	2.5	24	80	10	63	44	1	1	52	1.20
6029613--6029646	2	17.0	2	100	0	68	50	0	0	50	1.00
6036979--6037016	18	2.1	19	90	5	60	47	0	0	52	1.00
6043349--6043396	23	2.1	23	100	0	96	25	16	12	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6053175--6053215	17	2.3	18	91	8	66	51	0	0	48	1.00
6053199--6053279	28	3.0	27	75	18	80	61	1	0	37	1.04
6061291--6061453	59	2.7	60	83	6	190	35	11	6	46	1.66
6061463--6061601	59	2.4	59	85	1	181	35	11	7	45	1.68
6061711--6061770	22	2.8	21	76	2	57	60	3	0	36	1.14
6062966--6063237	86	3.2	86	83	3	334	37	12	24	25	1.90
6062966--6063332	86	4.4	85	79	9	319	39	11	23	25	1.89
6074900--6075228	59	5.6	57	73	12	220	34	11	8	44	1.72
6075356--6075493	59	2.3	58	84	11	174	38	7	2	51	1.45
6075513--6075561	22	2.2	22	81	3	53	55	2	4	38	1.31
6075552--6075580	4	7.5	4	92	7	51	75	0	0	24	0.80
6076283--6076323	13	3.2	13	100	0	82	53	21	7	17	1.67
6076988--6077051	20	3.1	21	78	10	62	42	6	0	51	1.27
6081523--6081669	73	2.0	73	98	0	285	33	24	6	35	1.82
6092428--6092452	1	25.0	1	100	0	50	0	0	0	100	0.00
6104375--6104431	25	2.2	27	84	9	82	49	3	5	42	1.42
6115113--6115153	21	1.9	22	85	14	59	39	4	0	56	1.21
6117490--6117535	3	15.0	3	86	4	65	2	34	2	60	1.21
6125360--6125507	76	2.0	76	97	1	280	33	14	16	35	1.89
6128848--6128901	21	2.5	21	90	3	81	14	12	16	55	1.69
6131122--6131159	17	2.2	18	95	4	69	31	13	2	52	1.54
6137561--6137698	52	2.7	50	82	3	150	51	9	10	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6141650--6141751	25	4.1	25	83	6	100	81	0	6	10	0.92
6141667--6141726	7	8.9	7	84	14	81	85	0	1	13	0.69
6141650--6141760	32	3.5	32	77	15	104	79	0	9	10	0.99
6141650--6141749	18	5.4	17	76	16	74	81	1	7	11	0.93
6141677--6141758	7	12.6	7	79	19	63	81	0	7	10	0.86
6141667--6141759	14	7.0	14	76	15	65	80	0	7	11	0.90
6145892--6145938	22	2.1	22	84	7	60	23	2	4	70	1.16
6146012--6146049	2	19.0	2	100	0	76	50	0	0	50	1.00
6147794--6147855	4	15.5	4	89	0	61	51	9	0	38	1.35
6147794--6147846	8	6.6	8	93	0	70	50	11	0	37	1.38
6147794--6147846	12	4.4	12	87	0	70	50	11	0	37	1.38
6150408--6150439	16	2.1	15	94	5	55	25	6	6	62	1.42
6152058--6152109	11	4.7	11	75	0	50	51	1	5	40	1.37
6152071--6152630	22	25.9	22	68	11	147	50	5	7	36	1.55
6152501--6152606	43	2.4	43	85	1	131	47	5	9	37	1.60
6152748--6152787	3	13.0	3	94	5	71	65	0	0	35	0.93
6153185--6153214	14	2.1	14	93	0	51	93	3	3	0	0.42
6153977--6154006	4	7.5	4	92	0	51	80	0	0	20	0.72
6153974--6154026	20	2.7	20	77	11	56	75	0	3	20	0.96
6154150--6154190	12	3.4	12	90	6	57	70	0	0	29	0.87
6154322--6154420	16	6.7	14	75	16	67	47	31	0	21	1.51
6154322--6154420	29	3.3	29	78	13	96	47	31	0	21	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6154379--6154404	13	2.0	13	100	0	52	53	30	0	15	1.42
6154408--6154459	21	2.5	21	100	0	104	40	30	7	21	1.81
6154451--6154519	28	2.5	28	80	2	86	49	30	0	20	1.49
6154453--6154518	14	4.7	14	80	0	78	51	28	0	19	1.47
6154580--6154636	30	1.9	30	85	7	80	47	33	0	19	1.50
6154610--6154651	21	1.9	23	90	9	70	47	38	0	14	1.44
6154612--6154664	21	2.5	20	80	14	54	52	32	0	15	1.42
6156920--6156971	16	3.3	16	78	2	61	23	0	26	50	1.50
6156910--6156970	32	1.9	32	86	6	88	24	0	27	47	1.52
6156945--6156988	22	2.0	22	81	0	52	20	0	27	52	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100