genome.fa.s113.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  83  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16932242--16932485	133	1.8	133	88	0	371	21	23	33	21	1.97
16933251--16933303	26	2.0	26	88	0	79	32	30	15	22	1.94
16934079--16934322	133	1.8	133	88	0	371	21	23	33	21	1.97
16935088--16935140	26	2.0	26	92	0	88	28	28	18	24	1.98
16937097--16937149	26	2.0	26	88	0	79	28	26	20	24	1.99
16937547--16937616	26	2.7	26	95	0	131	25	20	22	31	1.98
16938294--16938344	26	2.0	26	88	0	75	27	25	15	31	1.96
16938520--16938809	158	1.8	158	79	5	334	20	27	29	23	1.99
16939460--16939512	26	2.0	26	88	0	79	30	26	18	24	1.98
16939961--16940013	26	2.0	26	88	0	79	26	26	18	28	1.98
16940157--16940209	26	2.0	26	96	0	97	30	28	16	24	1.97
16941462--16941514	26	2.0	26	86	13	74	30	16	24	28	1.97
16941939--16941991	26	2.0	26	88	0	79	26	16	28	28	1.97
16942137--16942188	26	2.0	26	88	7	79	28	19	26	25	1.98
16941919--16942290	197	1.9	197	79	6	423	23	26	27	22	1.99
16942596--16942646	26	2.0	26	92	0	84	29	19	27	23	1.98
16942778--16942830	26	2.0	26	92	7	90	28	20	24	26	1.99
16942544--16942982	184	2.4	183	86	3	596	23	28	26	22	1.99
16941903--16943160	641	1.9	647	82	4	1577	23	28	25	22	1.99
16943657--16943709	26	2.0	26	92	7	90	28	20	24	26	1.99
16944000--16944049	26	1.9	26	87	0	73	32	18	22	28	1.97
16944614--16944692	26	3.0	26	96	0	140	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16945361--16945412	26	2.0	25	88	3	77	28	21	25	25	1.99
16945703--16945755	26	2.0	26	88	0	79	26	16	28	28	1.97
16946400--16946451	26	2.0	26	88	0	77	26	17	26	28	1.97
16947559--16948055	184	2.5	192	80	10	530	24	26	25	22	2.00
16947775--16947826	26	2.0	26	92	7	88	26	19	26	26	1.99
16947688--16948054	209	1.8	198	82	10	472	24	26	25	22	2.00
16947221--16948131	393	2.3	393	80	3	1019	24	27	26	22	2.00
16948009--16948317	159	1.9	158	81	1	368	22	31	28	18	1.97
16948327--16948379	26	2.0	26	89	7	81	26	20	24	28	1.99
16949054--16949563	159	3.2	155	76	6	486	24	30	25	19	1.98
16948699--16949801	343	3.3	336	78	9	1126	23	28	27	20	1.99
16949201--16949692	159	3.1	156	75	6	472	22	29	26	20	1.99
16949054--16949630	159	3.6	155	74	8	482	23	30	26	19	1.98
16952242--16952294	26	2.0	26	89	7	81	30	15	24	30	1.95
16952240--16952595	197	1.8	197	86	0	514	23	25	26	23	2.00
16952465--16952965	159	3.2	157	76	5	470	25	28	25	20	1.99
16952941--16952991	26	2.0	26	88	7	77	29	13	23	33	1.93
16954148--16954200	26	2.0	26	92	7	90	24	18	26	30	1.98
16954871--16954922	26	2.0	25	85	3	68	30	19	23	26	1.98
16955376--16955447	26	2.8	26	95	0	126	26	19	27	26	1.99
16955593--16955645	26	2.0	26	92	7	90	28	20	24	26	1.99
16955397--16955749	196	1.8	195	83	4	478	23	27	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16956093--16956145	26	2.0	26	92	0	88	24	18	28	28	1.98
16956853--16957355	158	3.2	158	77	4	465	23	30	26	19	1.98
16957329--16957381	26	2.0	26	92	0	88	28	18	24	28	1.98
16957309--16957688	197	1.9	196	83	4	489	25	26	25	22	2.00
16960265--16960352	30	3.0	30	66	17	85	35	21	18	25	1.95
16960854--16960905	26	2.0	26	92	7	88	26	15	26	30	1.96
16961587--16961638	26	2.0	26	88	7	79	28	17	25	28	1.97
16961739--16962174	158	2.7	159	72	9	364	22	28	29	19	1.98
16962233--16962285	26	2.0	26	92	7	90	30	16	22	30	1.96
16962945--16962997	26	2.0	26	85	7	72	30	18	22	28	1.98
16964362--16964414	26	2.0	26	89	7	81	28	20	24	26	1.99
16965429--16965479	26	2.0	26	92	7	86	29	19	23	27	1.98
16967208--16967621	159	2.6	159	80	5	444	22	28	29	19	1.98
16974295--16974641	158	2.2	158	79	8	359	23	26	27	22	1.99
16974612--16974664	26	2.0	26	88	0	79	24	18	26	30	1.98
16974807--16974857	26	2.0	26	84	7	68	31	15	23	29	1.95
16974637--16975468	355	2.3	352	80	4	877	23	27	26	21	1.99
16975505--16975557	26	2.0	26	88	0	79	22	18	24	33	1.97
16975713--16976210	159	3.2	154	77	6	410	23	30	26	19	1.98
16976815--16976847	11	3.0	11	95	0	57	21	36	24	18	1.95
16976917--16976969	26	2.0	26	85	7	72	32	20	22	24	1.98
16977351--16977845	158	3.1	159	76	6	398	24	29	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16977827--16977879	26	2.0	26	85	0	70	26	18	24	30	1.98
16978987--16979021	13	2.7	13	90	0	52	31	22	40	5	1.78
16980310--16980362	26	2.0	26	92	7	90	30	16	22	30	1.96
16980335--16980634	158	1.9	158	82	3	372	23	30	27	18	1.97
16981866--16981916	26	2.0	26	84	7	68	29	21	21	27	1.99
16981638--16981996	196	1.8	196	86	3	517	23	25	27	23	2.00
16983090--16983145	26	2.2	26	93	6	96	28	19	23	28	1.98
16983528--16983580	26	2.0	26	89	7	81	26	18	26	28	1.98
16984251--16984303	26	2.0	26	89	7	81	33	18	20	26	1.96
16984592--16984644	26	2.0	26	96	0	97	24	20	28	26	1.99
16984768--16985071	158	1.9	159	80	4	355	21	28	27	23	1.99
16985563--16985594	12	2.4	14	80	20	50	37	12	34	15	1.85
16985568--16985598	12	2.6	12	100	0	62	38	19	29	12	1.89
16986096--16986155	26	2.4	26	86	5	88	28	20	23	28	1.99
16986551--16987209	343	1.9	343	80	3	772	24	30	25	20	1.98
16987143--16987195	26	2.0	26	88	0	79	30	18	22	28	1.98
16987865--16987917	26	2.0	26	92	7	90	33	20	18	26	1.96
16990115--16990167	26	2.0	26	92	7	90	28	16	24	30	1.97
16990459--16990510	26	2.0	26	92	0	86	25	21	26	26	1.99
16990668--16990720	26	2.0	26	85	7	72	28	18	22	30	1.98
16990852--16990904	26	2.0	26	88	0	79	26	18	26	28	1.98
16991387--16991439	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16992135--16992187	26	2.0	26	88	0	79	26	18	28	26	1.98
16992370--16992790	159	2.7	156	75	5	396	25	26	26	20	1.99
16992846--16992897	26	2.0	26	84	0	68	28	15	26	28	1.96
16993541--16993593	26	2.0	26	85	7	72	32	16	22	28	1.96
16992687--16994309	890	1.8	881	87	3	2432	27	22	22	27	1.99
16995008--16995060	26	2.0	26	92	0	88	24	18	28	28	1.98
16994779--16995320	209	2.6	209	85	2	712	24	26	27	22	2.00
16998307--16998355	23	2.1	23	96	0	89	30	32	4	32	1.77
17002389--17002705	159	2.0	159	84	4	417	24	27	25	22	2.00
17002637--17002690	26	2.1	26	89	0	81	25	18	27	27	1.98
17003911--17003963	26	2.0	26	89	7	81	28	18	24	28	1.98
17004262--17004313	26	2.0	25	92	3	86	25	17	26	30	1.97
17005827--17005879	26	2.0	26	85	7	72	30	18	22	28	1.98
17005668--17006036	184	2.0	184	82	4	449	24	28	25	21	1.99
17006221--17006824	159	3.8	157	72	8	463	23	30	26	19	1.98
17006291--17006875	317	1.8	316	81	5	716	22	30	27	19	1.98
17007385--17007417	12	2.8	12	95	0	57	27	18	42	12	1.85
17008021--17008073	26	2.0	26	92	0	88	26	20	26	26	1.99
17008743--17008795	26	2.0	26	85	7	72	28	16	24	30	1.97
17009086--17009138	26	2.0	26	96	0	97	24	20	28	26	1.99
17009283--17009335	26	2.0	26	92	7	90	30	16	22	30	1.96
17009626--17009681	26	2.2	26	93	6	96	26	19	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17010337--17010389	26	2.0	26	85	7	72	30	18	22	28	1.98
17010659--17010711	26	2.0	26	89	7	81	22	20	28	28	1.99
17010856--17010908	26	2.0	26	85	7	72	28	20	24	26	1.99
17010636--17011145	197	2.7	196	80	8	532	24	27	25	22	2.00
17010815--17011155	184	1.9	183	82	7	431	24	26	26	22	2.00
17011762--17011811	26	1.9	26	91	0	82	32	14	22	32	1.93
17012073--17012550	196	2.4	196	86	2	665	24	27	26	21	2.00
17012440--17012492	26	2.0	26	92	7	90	28	20	24	26	1.99
17012465--17012827	158	2.3	158	78	5	383	24	28	25	20	1.99
17012465--17012988	159	3.3	156	77	4	494	24	29	25	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100