genome.fa.s113.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  48  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11769156--11769190	19	1.9	17	88	11	52	5	14	0	80	0.89
11769690--11769737	23	2.3	21	86	13	64	47	20	6	25	1.73
11773283--11773327	14	3.0	15	87	9	65	17	0	0	82	0.68
11773289--11773342	22	2.5	22	85	8	74	12	1	1	83	0.81
11773289--11773342	23	2.4	23	87	9	76	12	1	1	83	0.81
11773284--11773342	31	1.9	31	86	6	84	13	1	1	83	0.81
11773283--11773342	8	7.6	8	78	15	63	15	1	1	81	0.85
11773537--11773583	20	2.3	20	82	10	51	76	4	6	12	1.12
11774383--11774429	7	6.7	7	78	7	51	82	4	2	10	0.88
11774397--11774435	20	1.9	20	94	5	69	79	7	0	12	0.93
11774974--11775034	8	7.2	9	78	19	69	42	0	13	44	1.43
11774986--11775060	2	37.5	2	78	5	62	41	0	12	46	1.41
11774979--11775060	16	5.0	16	73	5	74	41	0	12	46	1.41
11775039--11775146	44	2.5	42	88	5	162	46	15	4	33	1.67
11775116--11775166	12	4.1	12	82	9	66	47	11	1	39	1.52
11775656--11775697	22	2.0	22	90	4	68	47	2	0	50	1.14
11776359--11776387	12	2.3	13	94	5	51	44	0	0	55	0.99
11777010--11777067	26	2.2	27	84	3	73	67	1	5	25	1.21
11780139--11780168	15	1.9	16	93	6	53	0	16	30	53	1.44
11780374--11780520	76	1.9	77	83	4	181	43	15	8	31	1.78
11787571--11787734	58	2.8	59	85	5	215	48	3	10	37	1.53
11787571--11787765	58	3.3	58	82	7	162	49	5	9	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11788964--11789049	2	43.0	2	97	0	163	1	48	0	50	1.08
11793937--11793977	1	41.0	1	92	0	55	2	0	4	92	0.44
11794524--11794585	30	2.1	30	81	6	72	32	0	8	59	1.26
11794627--11794854	59	3.8	60	82	5	248	47	3	11	36	1.59
11794757--11794879	59	2.1	59	80	4	131	51	4	9	34	1.56
11794636--11794879	118	2.0	120	79	3	269	47	4	11	35	1.61
11802692--11802723	2	16.0	2	93	0	55	46	0	3	50	1.17
11803298--11803346	24	2.0	24	92	7	82	40	6	24	28	1.79
11805256--11805297	21	2.0	21	100	0	84	47	0	28	23	1.52
11805600--11805748	79	1.9	80	90	2	239	41	18	15	24	1.89
11806494--11806630	72	1.9	72	92	0	229	42	20	15	21	1.89
11808286--11808328	22	2.0	22	85	0	59	58	0	2	39	1.11
11808583--11808618	18	2.0	18	88	0	54	55	0	0	44	0.99
11811258--11811320	32	2.0	32	96	0	117	36	6	12	44	1.68
11813788--11813822	5	7.0	5	93	6	54	57	0	2	40	1.14
11815409--11815445	19	1.9	19	88	0	56	54	0	0	45	1.00
11815476--11815523	17	2.8	17	77	3	51	45	0	0	54	0.99
11819190--11819229	13	3.1	13	81	0	53	57	0	2	40	1.12
11819207--11819249	16	2.4	18	88	11	63	72	0	0	27	0.85
11820131--11820191	28	2.3	26	86	8	86	31	14	6	47	1.70
11821684--11821729	23	2.0	23	86	4	65	56	8	13	21	1.63
11825982--11826019	16	2.5	16	87	8	53	0	10	2	86	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11829410--11829462	27	1.9	28	85	11	74	50	1	7	39	1.41
11830054--11830104	21	2.4	22	83	9	61	43	5	1	49	1.38
11829867--11830206	174	1.9	175	89	0	529	37	9	5	47	1.60
11830248--11830817	216	2.6	218	80	7	620	24	12	10	52	1.69
11831158--11831200	16	2.7	15	82	7	50	13	4	2	79	1.00
11832904--11832956	3	17.3	3	88	11	81	64	0	0	35	0.94
11835335--11835575	66	3.7	65	83	9	278	59	5	8	25	1.49
11835335--11835575	128	1.8	132	80	7	296	59	5	8	25	1.49
11836331--11836385	19	3.0	17	79	12	56	18	3	18	60	1.51
11836337--11836385	6	7.8	6	84	11	55	18	4	16	61	1.50
11850301--11850352	16	3.3	15	73	10	50	65	5	0	28	1.16
11850301--11850366	32	2.1	32	82	5	80	60	4	0	34	1.17
11859264--11859297	15	2.3	15	89	0	50	5	11	35	47	1.65
11861827--11861862	16	2.1	17	90	10	56	63	0	0	36	0.94
11865158--11865214	30	1.9	30	85	7	80	35	3	1	59	1.25
11865237--11865271	16	2.2	16	89	0	52	48	0	0	51	1.00
11865245--11865320	30	2.7	27	83	8	89	60	0	1	38	1.05
11865245--11865320	28	2.6	30	80	13	97	60	0	1	38	1.05
11867396--11867500	52	2.0	52	81	7	124	27	20	7	44	1.78
11868961--11869012	22	2.5	21	87	12	72	46	0	1	51	1.12
11870484--11870640	86	1.8	85	83	1	206	37	9	14	38	1.79
11871374--11871440	34	2.0	34	81	0	80	29	11	22	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11871455--11871540	34	2.6	34	73	12	79	37	18	13	30	1.90
11872626--11872665	1	40.0	1	84	0	53	92	2	0	5	0.45
11872626--11872665	15	2.8	14	85	7	62	92	2	0	5	0.45
11872626--11872670	7	6.0	8	85	12	51	88	2	2	6	0.66
11872826--11872944	21	5.5	20	68	22	64	21	2	0	74	0.98
11872814--11872891	6	13.3	6	82	8	81	16	2	0	80	0.82
11872869--11873011	3	46.7	3	71	16	66	26	2	4	67	1.20
11872820--11872944	46	2.7	45	80	13	137	20	2	0	76	0.96
11873102--11873142	16	2.7	15	88	7	64	7	2	0	90	0.54
11873101--11873147	14	3.3	14	79	5	58	12	2	0	85	0.70
11873103--11873143	21	2.0	21	90	4	66	9	2	0	87	0.62
11873400--11873424	10	2.5	10	100	0	50	16	0	24	60	1.36
11874006--11874061	11	5.4	11	87	4	64	14	5	0	80	0.88
11874006--11874083	6	15.4	5	74	19	65	14	3	1	80	0.91
11874005--11874083	17	5.1	16	76	18	78	13	3	1	81	0.90
11874005--11874086	27	3.0	27	78	8	78	14	3	1	80	0.91
11874005--11874098	25	3.9	23	74	19	68	14	5	2	77	1.04
11874108--11874320	59	3.6	59	82	5	279	51	5	12	30	1.63
11874098--11874320	116	1.9	117	90	2	360	52	5	12	30	1.61
11874282--11874355	35	2.1	35	100	0	148	51	4	18	25	1.64
11874244--11874414	94	1.8	94	89	2	272	48	4	15	31	1.65
11874319--11874656	60	5.7	59	85	5	405	44	5	13	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11874317--11874656	120	2.9	116	87	5	457	44	6	12	36	1.68
11883007--11883153	70	2.1	70	82	9	176	29	12	11	46	1.76
11883348--11883387	13	3.2	13	82	7	55	82	0	5	12	0.82
11890389--11890447	31	1.9	31	82	0	73	50	16	11	20	1.76
11894930--11894976	21	2.2	20	79	17	51	6	8	8	76	1.15
11895562--11895587	13	2.0	13	100	0	52	38	0	0	61	0.96
11895584--11895631	23	2.1	23	84	3	62	54	4	2	39	1.32
11903062--11903098	4	9.2	4	93	0	65	51	27	0	21	1.48
11904503--11904560	3	18.7	3	86	13	82	65	0	1	32	1.03
11905167--11905201	16	2.1	17	89	5	54	71	0	2	25	1.00
11925637--11925664	5	5.6	5	100	0	56	21	0	0	78	0.75
11927572--11927620	25	2.1	22	81	11	53	32	0	24	42	1.55
11927705--11927734	10	3.0	10	90	0	51	50	0	6	43	1.28
11928172--11928197	3	8.7	3	100	0	52	34	0	0	65	0.93
11928296--11928338	3	14.3	3	100	0	86	67	0	0	32	0.91
11929727--11929755	2	14.5	2	100	0	58	48	0	0	51	1.00
11930528--11930556	15	1.9	15	100	0	58	51	13	13	20	1.75
11930601--11930740	9	14.4	9	72	15	93	58	3	1	36	1.24
11930602--11930751	20	7.8	19	78	14	141	58	4	1	36	1.28
11930620--11930732	31	3.7	31	80	6	117	58	4	1	35	1.29
11930601--11930766	10	16.8	10	75	10	105	57	4	1	35	1.30
11931117--11931282	20	8.7	19	66	19	69	36	4	4	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11931704--11931740	14	2.5	15	86	8	58	43	0	0	56	0.99
11934358--11934400	19	2.2	20	95	4	79	25	2	0	72	0.97
11934363--11934399	16	2.4	16	83	16	51	24	0	0	75	0.80
11934992--11935039	3	16.0	3	95	0	87	33	2	0	64	1.05
11936600--11936653	24	2.2	24	83	6	65	29	12	7	50	1.68
11936724--11936906	98	1.9	97	84	5	244	41	16	13	28	1.86
11937090--11937171	43	1.9	43	84	0	110	37	14	13	34	1.85
11937440--11937628	43	4.4	42	82	6	209	40	12	14	33	1.83
11937373--11937627	86	3.0	85	80	3	287	40	12	13	33	1.83
11937478--11937666	43	4.4	43	85	2	220	36	12	16	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100