genome.fa.s113.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  82  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16856097--16856567	158	3.0	158	77	5	407	23	32	26	18	1.97
16857293--16857344	26	2.0	26	88	7	79	28	17	25	28	1.97
16857635--16857687	26	2.0	26	85	0	70	26	16	26	30	1.97
16858541--16858590	26	1.9	26	91	0	82	28	22	28	22	1.99
16858894--16858945	26	2.0	26	88	0	77	28	19	25	26	1.98
16858734--16859298	184	3.0	182	79	8	614	25	29	24	20	1.99
16859089--16859138	26	2.0	25	84	11	66	34	20	20	26	1.96
16859114--16859558	159	2.8	157	76	5	416	24	31	25	17	1.97
16859589--16859641	26	2.0	26	92	7	90	28	20	24	26	1.99
16859430--16859799	184	2.0	184	87	0	524	22	29	27	20	1.98
16859057--16860502	501	2.9	498	83	4	1669	23	30	26	20	1.99
16859615--16860496	158	5.6	157	77	4	756	23	29	26	20	1.99
16859614--16860452	317	2.6	318	78	5	817	23	30	25	20	1.99
16861035--16861087	26	2.0	26	85	0	70	32	24	18	24	1.97
16861200--16861563	159	2.3	158	80	6	403	20	26	29	23	1.99
16861298--16861912	324	1.9	324	79	4	704	21	27	26	24	1.99
16861859--16861911	26	2.0	26	89	7	81	30	22	18	28	1.98
16862426--16862478	26	2.0	26	88	0	79	28	26	18	26	1.98
16862512--16863747	159	7.8	157	76	5	959	19	27	30	22	1.98
16862459--16863112	317	2.1	317	85	2	886	19	27	30	22	1.98
16862991--16863747	317	2.4	318	80	5	877	19	27	30	22	1.98
16862506--16863587	476	2.3	476	84	2	1379	18	27	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16862584--16863736	476	2.4	476	82	2	1255	19	27	30	22	1.98
16864037--16864063	13	2.1	13	100	0	54	0	37	33	29	1.58
16864178--16864629	159	2.9	158	70	6	394	19	26	28	25	1.98
16864602--16864669	26	2.6	26	90	0	100	26	20	22	30	1.98
16864606--16864680	26	2.9	26	86	4	98	26	22	21	29	1.99
16865348--16865400	26	2.0	26	96	0	97	26	28	20	24	1.99
16865830--16865882	26	2.0	26	92	7	90	30	24	16	28	1.97
16866924--16866976	26	2.0	26	88	0	79	28	26	18	26	1.98
16868159--16868208	26	1.9	26	95	0	91	24	30	20	26	1.98
16868259--16868687	159	2.7	158	77	4	405	17	27	30	23	1.97
16869027--16869079	26	2.0	26	92	0	88	26	26	20	26	1.99
16869537--16869589	26	2.0	26	89	7	81	28	18	18	33	1.95
16870300--16870780	159	3.0	158	75	4	441	21	28	27	22	1.99
16870756--16870806	26	2.0	26	92	7	86	27	25	15	31	1.96
16871461--16871513	26	2.0	26	89	7	81	24	26	20	28	1.99
16871526--16871991	159	2.9	159	76	8	435	18	26	31	23	1.97
16871963--16872015	26	2.0	26	82	7	63	28	20	18	32	1.97
16872343--16872395	26	2.0	26	92	0	88	28	28	18	24	1.98
16873407--16873459	26	2.0	26	89	7	81	28	26	20	24	1.99
16873476--16874572	159	6.9	158	77	3	878	19	27	30	22	1.98
16873433--16874572	318	3.6	317	84	1	1431	19	27	30	21	1.98
16874545--16874597	26	2.0	26	88	0	79	26	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16874927--16874979	26	2.0	26	92	0	88	28	28	18	24	1.98
16876148--16876200	26	2.0	26	88	0	79	30	28	18	22	1.98
16876653--16876702	26	1.9	26	84	8	66	28	22	18	32	1.97
16884281--16884333	26	2.0	26	92	7	90	26	24	20	28	1.99
16885732--16886544	159	5.1	157	75	8	630	20	26	28	23	1.99
16885732--16886545	318	2.6	315	83	1	1011	20	26	28	23	1.99
16886518--16886570	26	2.0	26	92	7	90	26	24	20	28	1.99
16887620--16888122	159	3.2	159	73	4	460	19	26	31	23	1.98
16888462--16888514	26	2.0	26	85	0	70	30	26	16	26	1.97
16888568--16888978	159	2.6	154	79	6	403	18	27	28	24	1.98
16889683--16889735	26	2.0	26	85	7	72	26	26	18	28	1.98
16889784--16890251	159	2.9	159	76	5	428	19	28	29	22	1.98
16890396--16890736	157	2.2	158	80	1	371	21	26	26	25	2.00
16890710--16890762	26	2.0	26	89	7	81	28	20	18	32	1.97
16891068--16891585	159	3.3	155	73	7	432	19	24	29	26	1.99
16891568--16891620	26	2.0	26	85	7	72	26	22	18	32	1.97
16892035--16892059	11	2.3	11	100	0	50	16	28	36	20	1.93
16892626--16892678	26	2.0	26	88	0	79	26	24	20	28	1.99
16892649--16893153	158	3.2	156	75	6	469	20	25	29	24	1.99
16892930--16893729	367	2.2	367	83	2	982	21	25	27	25	1.99
16894175--16894199	11	2.3	11	100	0	50	20	24	40	16	1.91
16894780--16894832	26	2.0	26	88	0	79	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16894959--16895308	159	2.2	159	78	6	359	21	25	27	25	1.99
16895282--16895334	26	2.0	26	86	13	74	30	24	16	28	1.97
16895492--16895544	26	2.0	26	92	0	88	32	24	15	28	1.95
16895518--16895862	159	2.2	158	79	5	367	19	24	30	26	1.98
16898074--16898126	26	2.0	26	96	0	97	26	24	20	28	1.99
16898257--16898309	26	2.0	26	89	7	81	28	22	18	30	1.98
16898419--16898451	18	1.9	17	88	11	50	15	24	42	18	1.88
16899488--16899540	26	2.0	26	89	7	81	28	22	20	28	1.99
16899564--16899593	12	2.5	12	94	0	51	43	30	23	3	1.70
16899709--16900091	159	2.4	158	77	6	398	21	26	29	22	1.99
16900197--16900248	26	2.0	26	92	0	86	28	28	17	25	1.97
16900518--16900570	26	2.0	26	85	7	72	28	22	18	30	1.98
16901184--16901236	26	2.0	26	88	0	79	28	26	18	26	1.98
16902535--16902910	158	2.4	158	76	4	364	19	26	28	24	1.98
16902882--16902934	26	2.0	26	89	7	81	24	18	20	35	1.95
16903091--16903143	26	2.0	26	85	0	70	26	26	20	26	1.99
16903564--16903595	11	2.9	11	100	0	64	25	37	28	9	1.87
16904196--16904246	26	2.0	26	88	0	75	31	27	15	25	1.96
16905945--16905997	26	2.0	26	88	0	79	30	24	16	28	1.97
16906091--16906465	158	2.4	158	79	7	395	20	26	27	25	1.99
16906822--16906876	26	2.1	26	100	0	110	20	21	47	10	1.80
16907846--16907898	26	2.0	26	89	7	81	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16908037--16908373	158	2.1	157	78	6	340	20	27	27	24	1.99
16908346--16908397	26	2.0	26	88	7	79	26	28	15	28	1.96
16908674--16908726	26	2.0	26	92	0	88	28	26	20	24	1.99
16908700--16909201	158	3.2	156	74	7	377	20	27	28	23	1.99
16909175--16909227	26	2.0	26	92	7	90	26	24	20	28	1.99
16908644--16910226	501	3.1	496	81	4	1744	21	26	27	23	1.99
16909020--16909386	184	2.0	184	87	4	535	20	28	27	23	1.99
16909241--16909705	159	2.9	158	79	5	526	19	27	29	23	1.98
16910725--16910777	26	2.0	26	89	7	81	26	26	18	28	1.98
16911045--16911097	26	2.0	26	92	7	90	26	24	20	28	1.99
16917497--16918061	158	3.6	157	77	6	559	19	29	28	22	1.98
16918044--16918096	26	2.0	26	82	7	63	24	18	22	33	1.97
16918411--16918463	26	2.0	26	88	0	79	30	28	18	22	1.98
16918012--16918779	355	2.2	341	79	9	790	19	27	30	22	1.98
16918437--16918929	158	3.1	157	74	7	440	18	28	30	21	1.97
16919262--16919312	26	2.0	26	88	0	75	29	23	15	31	1.95
16920290--16920342	26	2.0	26	92	0	88	30	26	16	26	1.97
16920428--16920480	26	2.0	26	89	7	81	26	22	20	30	1.98
16919559--16921233	859	1.9	859	90	0	2661	26	22	23	27	2.00
16921482--16921534	26	2.0	26	88	0	79	30	28	16	24	1.97
16921824--16921876	26	2.0	26	89	7	81	26	22	20	30	1.98
16922926--16922978	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16923148--16923239	47	2.0	46	89	2	139	20	17	47	14	1.82
16924707--16924759	26	2.0	26	88	0	79	28	26	18	26	1.98
16924931--16925022	47	2.0	46	89	2	139	20	17	47	14	1.82
16926106--16926163	26	2.2	26	84	3	71	31	25	17	25	1.97
16926453--16926505	26	2.0	26	89	7	81	26	22	20	30	1.98
16927185--16927263	26	3.0	26	83	3	106	27	22	20	29	1.98
16927564--16928881	158	8.2	157	71	9	585	21	26	28	23	1.99
16929576--16929628	26	2.0	26	88	0	79	32	30	15	22	1.94
16930404--16930647	133	1.8	133	87	0	362	22	23	32	21	1.98
16931413--16931465	26	2.0	26	88	0	79	32	30	15	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100