genome.fa.s113.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  43  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11023111--11023271	15	10.5	15	72	9	119	20	0	31	47	1.55
11024638--11024670	16	2.1	17	88	11	52	18	0	6	75	1.00
11025780--11025854	36	2.0	40	82	10	95	41	4	6	48	1.48
11026376--11026458	30	2.8	30	81	3	96	57	0	6	36	1.23
11026875--11026915	21	2.0	21	85	9	57	63	4	2	29	1.28
11026924--11026969	22	2.0	23	87	4	67	41	2	6	50	1.40
11027426--11027469	22	1.9	24	86	9	65	68	2	0	29	1.02
11028387--11028428	22	2.0	21	86	13	59	54	0	0	45	0.99
11037385--11037420	14	2.6	14	86	0	54	36	2	2	58	1.27
11039322--11039387	20	3.3	19	79	10	69	60	4	4	30	1.37
11039334--11039396	10	6.3	10	78	14	67	63	6	3	26	1.34
11039334--11039388	20	2.8	20	85	0	74	65	5	1	27	1.25
11039726--11039766	18	2.2	19	91	4	66	34	0	4	60	1.18
11039778--11039826	24	2.0	24	92	0	80	26	4	4	65	1.29
11045549--11045615	34	2.0	35	82	5	84	29	5	19	44	1.74
11046258--11046408	75	2.0	75	96	0	275	20	21	20	37	1.95
11047310--11047339	7	4.3	7	100	0	60	13	73	0	13	1.10
11047846--11047874	14	2.1	14	93	6	51	86	0	13	0	0.58
11052475--11052546	19	3.4	21	76	10	58	54	1	0	44	1.08
11052474--11052544	23	3.4	21	75	11	74	52	1	0	46	1.09
11054570--11054601	3	10.3	3	93	6	55	34	0	0	65	0.93
11062215--11062242	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11066507--11066536	11	2.7	11	94	0	51	46	6	10	36	1.64
11067264--11067309	23	2.0	24	91	4	76	23	2	6	67	1.25
11080267--11080395	41	3.2	40	83	4	161	24	9	17	48	1.76
11080266--11080559	84	3.5	84	73	16	225	26	11	16	45	1.81
11080307--11080504	43	4.6	43	76	10	156	26	11	15	46	1.80
11080763--11080827	4	16.0	4	76	20	64	23	1	4	70	1.14
11080772--11080827	9	6.7	9	78	19	59	21	1	5	71	1.15
11087087--11087161	37	2.0	37	82	5	89	49	4	1	45	1.29
11087954--11087986	14	2.4	14	94	0	57	15	0	0	84	0.61
11088326--11088389	29	2.1	30	88	5	94	48	1	0	50	1.10
11090933--11091130	99	2.0	98	94	1	342	38	11	20	29	1.87
11093198--11093262	25	2.6	27	80	9	66	49	0	0	50	1.00
11094215--11094290	18	4.4	16	72	18	55	50	0	1	48	1.09
11094255--11094297	22	1.9	23	95	4	79	55	0	0	44	0.99
11094305--11094373	24	2.8	25	74	12	63	44	1	0	53	1.09
11094310--11094356	24	2.0	23	87	4	67	42	0	0	57	0.98
11094321--11094364	14	3.2	15	75	21	51	40	0	0	59	0.98
11094341--11094386	20	2.3	19	85	7	56	52	0	2	45	1.13
11094391--11094448	19	3.1	19	82	2	73	58	1	0	39	1.08
11094380--11094448	37	1.9	37	88	5	106	60	1	0	37	1.06
11097592--11097628	18	2.1	18	100	0	74	35	10	16	37	1.83
11098822--11098890	28	2.5	27	82	15	79	18	2	30	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11098970--11099079	28	3.9	29	71	15	86	20	0	30	48	1.50
11098946--11099082	58	2.3	58	85	3	177	24	0	28	47	1.52
11102112--11102197	30	2.8	30	87	1	118	55	0	8	36	1.29
11106251--11106281	16	1.9	16	93	0	53	41	6	16	35	1.74
11106481--11106505	10	2.5	10	100	0	50	32	12	16	40	1.84
11112672--11112730	12	4.9	12	72	15	50	30	13	0	55	1.38
11112829--11112867	16	2.3	16	86	8	51	38	0	0	61	0.96
11112853--11112907	27	2.0	27	82	6	67	47	0	0	52	1.00
11112884--11112927	20	2.3	19	84	4	61	52	0	0	47	1.00
11118402--11118473	37	1.9	37	97	0	135	66	1	26	5	1.21
11122083--11122205	9	12.4	9	70	15	57	60	1	3	34	1.23
11122083--11122205	10	12.4	10	75	6	90	60	1	3	34	1.23
11122537--11122593	11	5.3	11	74	19	57	31	0	8	59	1.28
11126734--11126856	10	12.4	10	73	6	90	60	1	3	34	1.22
11126734--11126801	30	2.3	31	87	7	104	52	1	2	42	1.25
11127187--11127243	11	5.3	11	74	19	57	31	0	8	59	1.28
11129495--11129521	14	1.9	14	100	0	54	40	7	0	51	1.30
11131381--11131503	10	12.4	10	73	3	97	59	1	3	35	1.23
11131383--11131440	9	6.0	9	73	15	53	48	1	3	46	1.29
11131381--11131449	31	2.3	30	89	2	102	50	1	2	44	1.25
11131835--11131891	11	5.3	11	74	19	57	31	0	8	59	1.28
11134145--11134171	14	1.9	14	100	0	54	40	7	0	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11136034--11136078	9	4.7	10	81	15	51	51	0	6	42	1.28
11136034--11136098	30	2.2	29	89	5	96	49	1	4	44	1.32
11136067--11136104	20	1.9	20	88	0	58	50	2	2	44	1.30
11136034--11136105	29	2.5	28	84	6	90	52	1	4	41	1.29
11136103--11136153	9	5.4	9	81	6	57	70	1	3	23	1.14
11136061--11136153	19	4.8	20	75	9	75	62	2	3	32	1.23
11136459--11136533	10	7.8	10	72	19	61	28	0	9	62	1.26
11136485--11136546	12	5.6	12	72	20	55	29	1	8	61	1.34
11138798--11138824	14	1.9	14	100	0	54	40	7	0	51	1.30
11140677--11140706	15	2.0	15	93	0	51	66	0	3	30	1.07
11140693--11140738	10	4.7	10	76	15	51	52	0	6	41	1.27
11140692--11140758	30	2.3	29	89	2	98	50	1	4	43	1.31
11140703--11140795	30	3.2	30	77	7	84	58	2	2	37	1.22
11140718--11140801	10	8.9	9	72	13	62	59	2	2	35	1.23
11141133--11141188	11	5.3	11	79	16	64	32	0	7	60	1.24
11150756--11150818	21	2.9	20	76	17	63	34	3	3	58	1.30
11152557--11152606	23	2.3	21	76	10	55	46	2	0	52	1.12
11153186--11153239	22	2.5	22	93	0	90	38	0	9	51	1.34
11155183--11155224	10	4.1	10	77	17	50	4	16	0	78	0.91
11163288--11163315	2	14.0	2	100	0	56	50	0	0	50	1.00
11168587--11168654	33	2.1	33	83	5	84	48	14	10	26	1.76
11169993--11170345	44	8.0	44	78	4	302	30	12	14	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11169978--11170303	88	3.7	88	83	3	350	29	12	14	43	1.83
11170041--11170345	132	2.3	130	82	6	346	30	12	14	42	1.83
11170563--11170608	6	8.0	6	95	4	78	17	0	0	82	0.67
11170565--11170609	16	2.7	16	86	6	63	15	0	0	84	0.62
11171497--11171548	19	2.7	20	84	6	70	11	1	15	71	1.23
11173216--11173276	16	3.8	16	77	12	54	3	21	0	75	0.94
11173239--11173280	21	2.0	21	86	4	59	4	21	0	73	1.01
11176168--11176204	18	2.2	18	85	9	51	10	29	0	59	1.31
11180494--11180531	14	2.9	13	81	11	51	55	0	2	42	1.14
11185329--11185554	121	1.9	121	85	0	317	37	12	19	30	1.89
11189786--11189830	23	2.0	23	95	0	81	46	8	8	35	1.66
11190484--11190516	10	3.3	10	91	8	50	27	0	0	72	0.85
11190926--11190964	20	2.0	20	90	5	62	25	0	5	69	1.09
11192099--11192153	18	3.1	17	77	12	58	5	7	5	81	0.97
11193503--11193548	20	2.3	20	84	0	56	47	4	4	43	1.42
11197565--11197591	6	4.5	6	100	0	54	0	14	51	33	1.43
11199502--11199544	3	14.3	3	100	0	86	65	0	0	34	0.93
11200214--11200249	18	2.0	18	88	0	54	55	2	0	41	1.14
11209361--11209389	12	2.4	12	100	0	58	27	17	6	48	1.72
11212876--11212911	15	2.4	15	90	0	54	16	2	2	77	1.00
11213612--11213652	18	2.2	19	83	12	50	65	2	0	31	1.05
11217550--11217586	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11223953--11223987	16	2.3	15	95	5	61	80	0	20	0	0.72
11224042--11224133	30	3.2	30	66	20	88	38	7	5	48	1.55
11224042--11224149	55	2.0	55	96	0	198	40	6	7	45	1.58
11224645--11224699	15	3.6	15	79	18	60	56	0	0	43	0.99
11224644--11224754	42	2.6	42	80	12	111	54	1	0	43	1.10
11224650--11224762	14	7.9	15	71	20	73	54	1	0	43	1.10
11224654--11225201	59	9.6	57	66	18	193	53	2	2	41	1.28
11224716--11224851	29	4.7	29	68	14	75	52	1	0	45	1.15
11224814--11224869	18	3.1	17	80	16	60	55	0	1	42	1.10
11224850--11224936	11	8.4	11	70	13	51	55	1	4	39	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100