genome.fa.s113.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  11  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2890448--2890684	117	2.0	116	87	5	336	47	5	8	37	1.58
2890448--2890684	59	4.1	59	83	4	295	47	5	8	37	1.58
2890663--2890700	15	2.5	15	87	12	60	57	2	5	34	1.35
2890614--2890765	71	2.1	72	78	9	168	50	4	7	38	1.51
2894700--2894778	30	2.9	29	82	12	87	77	1	16	5	1.01
2894694--2894778	26	3.1	27	81	15	97	78	1	15	4	0.97
2894690--2894764	38	1.9	38	81	7	89	74	1	17	6	1.10
2895622--2895669	20	2.3	21	85	3	62	39	8	16	35	1.79
2895638--2895677	21	1.9	21	94	0	71	35	5	15	45	1.68
2895771--2895877	42	2.5	42	80	3	108	36	12	16	34	1.86
2896095--2896275	44	4.1	44	88	2	220	22	11	19	46	1.81
2896488--2896536	5	9.6	5	78	12	55	16	0	0	83	0.64
2896491--2896535	9	5.0	9	78	10	56	13	0	0	86	0.57
2896488--2896536	22	2.4	21	83	10	66	16	0	0	83	0.64
2896491--2896536	10	4.5	10	91	8	67	15	0	0	84	0.62
2896882--2896942	31	2.0	31	86	0	86	19	11	19	49	1.78
2897563--2897596	17	1.9	18	88	5	52	52	2	0	44	1.16
2897485--2897822	61	5.5	61	71	15	228	48	5	9	36	1.60
2897574--2897716	71	2.0	73	86	5	202	48	6	8	37	1.59
2897538--2897771	130	1.8	130	86	7	341	47	5	11	36	1.63
2897668--2897818	59	2.5	61	77	13	161	47	5	11	35	1.63
2903467--2903534	31	2.2	30	84	2	82	52	1	4	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2906683--2906736	27	2.0	27	100	0	108	22	11	22	44	1.84
2909282--2909307	2	13.0	2	100	0	52	0	50	0	50	1.00
2933623--2933817	97	2.0	97	97	0	372	32	21	8	37	1.84
2933825--2933953	65	2.0	65	95	0	231	31	13	8	45	1.74
2935756--2935795	16	2.5	16	88	8	55	62	2	0	35	1.09
2939535--2939595	11	6.2	11	71	22	55	50	0	0	49	1.00
2939529--2939573	16	2.6	17	82	10	56	51	0	0	48	1.00
2960509--2960534	13	2.0	13	100	0	52	0	46	15	38	1.46
2961118--2961164	24	2.0	24	86	0	67	14	40	17	27	1.89
2965102--2965152	21	2.5	22	75	12	54	49	5	0	45	1.26
2965269--2965337	25	2.7	25	77	6	68	55	4	0	40	1.20
2965950--2966002	23	2.5	21	79	14	56	56	1	1	39	1.21
2966011--2966087	22	3.4	22	77	15	77	70	0	0	29	0.88
2966017--2966094	17	4.3	18	66	9	50	70	0	0	29	0.87
2966020--2966091	27	2.6	28	75	14	78	69	0	0	30	0.89
2966022--2966094	28	2.7	27	75	10	85	69	0	0	30	0.88
2966022--2966100	29	2.9	28	73	16	83	67	0	0	32	0.91
2966144--2966168	2	12.5	2	100	0	50	52	0	0	48	1.00
2978635--2978703	21	3.3	20	75	4	66	44	8	10	36	1.69
2978716--2978779	22	3.0	21	73	24	55	57	9	0	32	1.30
2978754--2978791	10	3.6	11	86	10	53	55	5	2	36	1.37
2978878--2978927	20	2.5	20	80	9	57	54	4	6	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978884--2978948	21	3.1	22	76	10	57	58	4	3	33	1.34
2979108--2979155	21	2.3	21	85	7	62	54	8	6	31	1.55
2979117--2979158	21	2.0	22	95	4	77	52	4	4	38	1.44
2979125--2979289	21	8.0	21	68	16	80	53	7	2	36	1.42
2979141--2979254	38	2.9	38	80	8	113	58	6	2	32	1.36
2979138--2979289	42	3.7	41	78	11	134	54	7	2	35	1.42
2981773--2981797	3	8.3	3	100	0	50	64	0	0	36	0.94
2981846--2981883	14	2.7	14	84	11	51	81	13	5	0	0.85
2985336--2985423	41	2.1	41	91	0	140	34	17	14	34	1.90
2985678--2985858	88	2.1	88	87	3	258	19	17	19	43	1.89
2985990--2986040	22	2.3	22	89	0	75	25	21	21	31	1.98
2985998--2986041	22	2.0	22	95	0	79	22	22	20	34	1.97
2986002--2986054	22	2.4	22	87	0	70	26	22	16	33	1.96
2985772--2986228	131	3.5	130	78	8	462	22	18	18	40	1.92
2986112--2986186	22	3.4	22	71	10	71	28	22	17	32	1.96
2985784--2986282	263	1.9	262	83	5	641	23	19	17	39	1.92
2986253--2986361	22	5.0	22	73	10	89	28	19	17	34	1.94
2986265--2986567	153	2.0	153	86	1	421	23	17	19	39	1.92
2986442--2986503	23	2.7	23	77	2	72	30	17	17	33	1.94
2986485--2986717	109	2.1	110	85	0	306	24	18	16	40	1.91
2986686--2986763	22	3.6	22	75	16	81	24	20	19	35	1.95
2986842--2986915	22	3.4	21	81	10	87	28	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2986835--2986897	21	3.0	21	81	9	74	28	19	20	31	1.97
2986572--2987002	153	2.8	151	84	2	538	25	19	16	38	1.92
2986842--2986928	22	4.0	21	80	8	77	28	20	18	32	1.96
2986725--2987285	262	2.1	261	83	2	714	24	19	17	38	1.93
2986995--2987038	22	2.0	22	86	0	61	27	20	18	34	1.96
2986878--2987140	110	2.4	108	85	5	366	23	19	18	39	1.92
2987096--2987161	21	3.1	21	75	12	71	30	24	16	28	1.97
2987096--2987177	43	1.9	43	92	0	137	28	23	17	31	1.96
2987104--2987178	22	3.5	22	76	10	73	28	24	17	30	1.97
2987149--2987190	22	1.9	22	85	9	59	28	23	16	30	1.96
2987248--2987330	43	1.9	44	87	2	123	30	18	15	36	1.92
2986987--2987329	152	2.2	151	82	4	411	24	19	18	38	1.93
2987250--2987341	23	4.1	23	75	8	91	28	18	18	34	1.95
2987254--2987364	22	5.0	22	73	6	73	28	17	18	36	1.93
2987141--2987462	175	1.8	176	85	3	452	23	20	18	37	1.94
2987315--2987585	110	2.5	109	87	1	389	21	18	20	39	1.92
2987542--2987625	23	3.7	23	88	3	107	25	22	23	28	1.99
2987697--2987739	22	2.0	22	90	0	68	34	20	18	25	1.96
2987293--2987783	265	1.9	265	84	1	662	22	19	19	38	1.93
2987940--2987989	21	2.5	19	81	15	57	56	0	0	44	0.99
2987950--2988004	27	2.2	27	84	12	73	61	0	0	38	0.96
2989520--2989630	16	7.2	15	72	17	68	47	29	0	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2989571--2989628	30	2.0	29	83	10	73	51	24	0	24	1.48
2989623--2989676	14	3.7	15	79	13	60	51	35	0	12	1.40
2989622--2989684	29	2.2	29	83	13	85	52	36	0	11	1.37
2989622--2989686	14	4.5	13	76	16	58	50	38	0	10	1.37
2992936--2992966	13	2.3	14	94	5	55	32	38	3	25	1.72
2996141--2996178	20	1.9	20	94	0	67	39	7	0	52	1.31
2999500--2999536	17	2.2	17	90	0	56	83	8	0	8	0.80
3001139--3001180	14	3.2	13	86	6	50	71	2	0	26	0.98
3012912--3013265	48	7.0	48	78	9	307	26	10	18	43	1.83
3012912--3013265	100	3.5	96	79	8	298	26	10	18	43	1.83
3012912--3013223	148	2.1	149	87	3	450	26	10	19	43	1.82
3012968--3013288	100	3.1	101	83	7	323	26	10	17	45	1.81
3012969--3013296	52	6.4	51	78	6	299	26	11	17	44	1.82
3013647--3013684	17	2.3	17	95	4	69	84	5	5	5	0.88
3015050--3015097	18	2.6	17	78	12	51	64	2	4	29	1.23
3015531--3015569	20	2.0	20	85	14	55	71	2	0	25	0.98
3015546--3015597	27	2.0	27	88	3	79	61	3	0	34	1.14
3015848--3015880	14	2.4	14	90	5	50	21	12	0	66	1.23
3025962--3026021	20	3.1	20	81	11	63	35	0	0	65	0.93
3033129--3033170	3	14.0	3	100	0	84	33	0	0	66	0.92
3033277--3033335	22	2.6	21	79	12	55	25	3	5	66	1.28
3033292--3033336	22	2.0	22	86	4	63	22	4	4	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3034235--3034312	5	14.8	5	75	17	61	14	5	2	78	1.03
3034234--3034312	17	4.6	16	76	16	70	13	5	2	78	1.02
3034235--3034302	22	3.1	21	74	19	59	13	5	2	77	1.06
3034327--3034784	58	7.7	57	77	10	411	44	7	12	36	1.69
3034329--3034783	121	3.8	119	82	9	520	44	7	12	36	1.69
3034665--3034699	15	2.3	15	95	0	61	48	0	0	51	1.00
3034814--3034842	9	3.2	9	100	0	58	10	0	0	89	0.48
3050066--3050110	20	2.4	19	85	7	56	53	2	6	37	1.40
3050572--3050636	29	2.2	29	83	2	76	41	10	1	46	1.48
3051319--3051404	26	3.3	25	69	18	68	43	6	10	39	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100