genome.fa.s113.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  36  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9583579--9583611	9	3.8	9	88	4	50	24	0	0	75	0.80
9583661--9583701	22	1.9	21	85	5	55	21	2	0	75	0.92
9583950--9584016	28	2.5	27	90	4	100	43	0	2	53	1.16
9583950--9584006	28	2.0	28	96	0	105	40	0	3	56	1.17
9584051--9584092	18	2.4	18	88	11	61	66	0	0	33	0.92
9586054--9586088	17	2.0	18	88	5	54	48	0	0	51	1.00
9587078--9587120	15	2.8	15	85	3	59	74	4	2	18	1.10
9592963--9593005	9	4.8	9	79	0	50	62	0	0	37	0.95
9592965--9593005	18	2.3	18	91	8	66	65	0	0	34	0.93
9593063--9593092	13	2.3	13	94	0	51	50	0	0	50	1.00
9594968--9595002	17	2.0	18	88	5	54	48	0	0	51	1.00
9596176--9596219	14	3.3	14	87	9	56	77	0	4	18	0.94
9602652--9602717	8	9.0	8	79	15	56	25	1	1	71	1.04
9606033--9606080	24	2.0	24	84	4	62	35	2	6	56	1.36
9618646--9618703	22	2.7	22	75	21	68	55	0	0	44	0.99
9618672--9618706	17	2.0	18	88	5	54	51	0	0	48	1.00
9618646--9618706	19	2.9	21	76	23	65	52	0	0	47	1.00
9620679--9620721	19	2.4	18	88	7	61	32	0	0	67	0.91
9620802--9620853	22	2.2	24	80	6	63	50	11	7	30	1.67
9621788--9621818	8	3.9	8	95	0	53	51	6	0	41	1.27
9624837--9624861	8	3.1	8	100	0	50	40	0	0	60	0.97
9624856--9624900	24	1.9	23	82	13	56	31	2	4	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9626439--9626544	30	3.5	29	80	10	106	48	1	7	42	1.42
9631877--9632768	333	2.7	331	85	1	1158	36	13	14	35	1.85
9642797--9643053	51	4.8	52	69	17	138	35	9	4	50	1.55
9644353--9644425	8	9.6	8	84	11	57	73	5	1	19	1.09
9644364--9644403	16	2.5	16	95	0	71	75	10	0	15	1.05
9650085--9650132	21	2.2	21	82	14	53	35	2	18	43	1.62
9650506--9650555	23	2.3	23	86	6	68	66	0	4	30	1.10
9650506--9650556	22	2.3	23	82	3	59	66	0	3	29	1.09
9654051--9654080	13	2.3	13	94	0	51	50	0	0	50	1.00
9654141--9654184	20	2.3	19	92	4	70	31	0	0	68	0.90
9654141--9654186	10	4.7	10	81	5	58	34	0	0	65	0.93
9654222--9654255	17	2.0	17	88	0	50	70	0	0	29	0.87
9656853--9656916	20	3.2	20	70	16	53	45	0	6	48	1.27
9659062--9659095	14	2.4	14	90	0	59	41	5	5	47	1.52
9662427--9662507	29	2.8	29	73	17	69	46	0	12	40	1.41
9662772--9662896	30	4.2	29	85	10	164	58	1	3	36	1.24
9662872--9662902	13	2.3	14	94	5	55	74	0	0	25	0.82
9664458--9664482	13	1.9	13	100	0	50	56	16	20	8	1.65
9668415--9668448	8	4.0	8	88	11	50	38	0	0	61	0.96
9669236--9669264	15	1.9	15	100	0	58	93	0	6	0	0.36
9671117--9671162	3	15.3	3	100	0	92	67	0	0	32	0.91
9672146--9672171	10	2.6	10	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9672199--9672227	10	2.7	11	94	5	51	17	0	0	82	0.66
9673190--9673234	16	2.8	16	86	0	54	55	8	2	33	1.43
9673645--9673696	22	2.5	22	90	6	81	48	0	0	51	1.00
9676556--9676596	3	13.7	3	89	0	64	26	4	34	34	1.78
9689049--9689127	39	2.0	39	100	0	158	37	20	17	24	1.93
9690800--9690835	11	3.3	11	88	0	54	58	8	8	25	1.55
9699967--9700014	1	48.0	1	80	0	51	0	4	6	89	0.58
9702300--9702343	2	22.0	2	90	0	70	45	0	2	52	1.13
9703749--9703775	2	13.5	2	100	0	54	51	0	48	0	1.00
9710053--9710077	11	2.3	11	100	0	50	8	16	24	52	1.70
9710991--9711240	63	4.0	63	88	2	342	20	11	43	24	1.85
9711285--9711462	78	2.2	79	86	3	232	19	14	39	25	1.90
9711432--9711502	33	2.2	33	86	0	97	22	12	42	22	1.87
9711408--9711574	87	1.9	87	90	0	262	22	11	37	28	1.89
9720074--9720114	21	2.0	21	90	0	64	39	19	0	41	1.52
9721278--9721326	22	2.1	22	85	7	62	65	2	4	28	1.22
9743276--9743316	19	2.1	20	78	17	50	31	0	0	68	0.90
9754298--9754343	19	2.6	18	82	6	58	41	0	0	58	0.98
9754466--9754493	2	14.0	2	100	0	56	50	0	0	50	1.00
9757049--9757094	17	2.8	17	77	9	51	45	4	8	41	1.55
9758302--9758373	24	3.0	24	100	0	144	16	33	12	37	1.86
9758544--9758575	15	2.1	15	94	0	55	37	3	0	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9765531--9765576	20	2.3	19	82	10	56	47	0	0	52	1.00
9765548--9765608	30	2.0	30	87	0	86	55	1	0	42	1.09
9768136--9768240	21	5.3	21	73	14	89	31	23	3	40	1.72
9768169--9768199	15	2.1	15	93	0	53	35	25	3	35	1.72
9768136--9768225	39	2.3	39	84	5	119	33	22	4	40	1.74
9768190--9768240	24	2.1	24	85	0	66	33	21	0	45	1.52
9768172--9768233	18	3.3	18	79	16	63	33	22	1	41	1.64
9773751--9773776	12	2.2	12	100	0	52	57	0	0	42	0.98
9775045--9775105	30	2.0	29	84	6	77	57	3	0	39	1.15
9775439--9775481	10	4.2	10	84	3	59	55	4	0	39	1.20
9775439--9775481	20	2.1	21	91	4	70	55	4	0	39	1.20
9777947--9777984	19	2.0	19	89	0	58	28	0	2	68	1.03
9777950--9777993	19	2.3	19	84	0	52	25	0	6	68	1.14
9787613--9787670	25	2.3	25	96	0	107	36	12	20	31	1.89
9789520--9789600	27	3.2	26	74	10	71	29	3	4	61	1.34
9789663--9789703	16	2.6	16	88	7	57	43	0	0	56	0.99
9791901--9791929	14	2.1	14	100	0	58	13	13	34	37	1.85
9793063--9793179	57	2.1	56	93	1	198	33	11	14	41	1.81
9793131--9793334	68	3.0	68	97	0	381	22	17	19	40	1.91
9802206--9802251	19	2.2	21	77	14	51	58	2	2	36	1.22
9802216--9802258	19	2.3	19	84	8	52	60	2	0	37	1.10
9807037--9807062	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9812757--9812807	21	2.5	19	79	14	57	68	0	0	31	0.90
9814224--9814272	21	2.4	21	89	3	73	42	2	0	55	1.11
9815082--9815113	14	2.2	15	94	5	57	37	0	3	59	1.13
9815914--9815942	2	15.0	2	92	7	51	48	0	0	51	1.00
9816139--9816187	20	2.4	20	82	3	62	32	0	2	65	1.04
9817980--9818015	15	2.5	14	86	8	54	75	2	5	16	1.12
9818340--9818369	10	3.1	10	95	4	53	36	0	0	63	0.95
9823527--9826617	441	7.0	441	96	0	5274	36	15	25	22	1.94
9831501--9831542	22	1.9	22	95	0	75	54	0	0	45	0.99
9831576--9831649	35	2.1	36	87	7	107	37	1	4	56	1.27
9835130--9835160	2	15.5	2	100	0	62	48	0	0	51	1.00
9835283--9835312	14	2.1	15	93	6	53	20	0	0	80	0.72
9835532--9835568	17	2.2	17	90	0	56	51	0	0	48	1.00
9835532--9835567	18	2.1	17	89	5	54	50	0	0	50	1.00
9839946--9839984	21	1.9	20	89	5	60	46	2	0	51	1.14
9840722--9840777	29	1.9	29	82	7	69	46	7	1	44	1.41
9843103--9843133	16	1.9	16	93	0	53	22	0	19	58	1.40
9844438--9844488	5	9.8	5	83	8	57	70	0	0	29	0.87
9844425--9844478	10	4.9	12	77	13	55	68	0	1	29	1.00
9844425--9844491	27	2.5	28	85	7	86	67	0	1	31	1.00
9846621--9846646	7	3.7	7	100	0	52	73	0	0	26	0.84
9846634--9846702	24	2.8	23	78	10	75	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9846809--9846861	21	2.5	20	88	8	79	37	3	1	56	1.28
9850019--9850114	48	2.0	48	89	4	149	16	36	16	30	1.91
9851097--9851284	87	2.1	87	96	0	340	19	28	24	27	1.99
9853462--9853500	11	3.5	11	100	0	78	43	35	10	10	1.73
9853770--9853812	20	2.1	20	86	4	59	34	0	0	65	0.93
9853855--9853880	13	2.0	13	100	0	52	46	0	0	53	1.00
9855807--9855881	39	1.9	39	100	0	150	30	30	5	33	1.80
9856951--9857057	55	1.9	55	84	3	144	40	14	14	30	1.86
9862704--9862759	24	2.4	23	88	5	87	46	3	8	41	1.52
9862723--9862799	30	2.6	30	87	2	102	49	2	6	41	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100