genome.fa.s113.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  14  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3751258--3751322	33	2.0	33	96	0	121	47	7	3	41	1.48
3755301--3755328	14	2.0	14	100	0	56	42	7	14	35	1.73
3759464--3759515	3	17.7	3	92	4	70	59	0	40	0	0.97
3762031--3762061	11	2.7	11	95	5	53	22	29	9	38	1.86
3767263--3767288	5	5.2	5	100	0	52	0	19	0	80	0.71
3770341--3770634	99	3.0	99	85	5	386	26	10	15	47	1.78
3779334--3779400	25	2.8	24	81	2	71	58	1	4	35	1.28
3779329--3779400	24	2.8	25	75	6	65	58	1	4	36	1.26
3791534--3791566	8	4.1	8	100	0	66	63	0	0	36	0.95
3793256--3793283	12	2.3	12	100	0	56	0	25	7	67	1.15
3793681--3793716	2	18.0	2	94	0	63	50	0	2	47	1.15
3797037--3797084	2	24.0	2	86	0	69	43	2	4	50	1.33
3797025--3797076	24	2.2	24	89	0	77	38	3	9	48	1.54
3800515--3800540	2	13.0	2	100	0	52	50	0	0	50	1.00
3806996--3807065	12	6.0	12	73	24	53	71	0	0	28	0.86
3806996--3807053	12	5.2	11	78	21	59	72	0	0	27	0.85
3806994--3807051	18	3.4	18	86	13	95	68	0	0	31	0.89
3807000--3807062	17	3.8	16	82	14	83	71	0	0	28	0.86
3806996--3807061	33	2.0	33	94	5	116	72	0	0	27	0.85
3807818--3807854	11	3.5	11	82	17	51	2	16	5	75	1.10
3812205--3812242	10	4.0	10	83	13	53	52	0	0	47	1.00
3813230--3813276	21	2.3	20	81	3	58	68	2	2	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3814269--3814317	21	2.3	21	86	6	64	40	2	0	57	1.10
3825572--3825597	3	8.7	3	100	0	52	30	0	0	69	0.89
3831852--3831910	2	29.5	2	78	0	64	45	1	6	45	1.40
3831852--3831909	12	4.8	12	86	0	80	44	1	6	46	1.40
3831852--3831924	24	3.0	24	79	0	83	46	4	6	42	1.49
3835870--3835922	25	2.1	25	82	6	63	52	0	1	45	1.11
3835897--3835960	35	1.9	35	84	9	89	46	0	0	53	1.00
3835914--3835963	16	2.9	17	82	17	59	40	0	0	60	0.97
3836176--3836242	28	2.5	26	85	7	82	47	1	0	50	1.10
3836201--3836252	11	4.2	12	76	9	52	55	0	0	44	0.99
3838989--3839021	16	2.1	16	100	0	66	30	0	6	63	1.18
3839020--3839059	13	3.2	13	82	3	55	40	0	0	60	0.97
3841041--3841069	14	2.1	14	93	6	51	41	0	0	58	0.98
3841009--3841071	22	2.8	23	78	9	67	36	3	1	58	1.23
3842496--3842525	12	2.4	13	94	5	53	90	0	10	0	0.47
3847581--3847610	15	2.0	15	100	0	60	40	0	13	46	1.43
3855982--3856073	21	4.4	21	97	0	166	34	28	7	29	1.85
3861874--3861954	28	2.9	28	77	3	92	37	4	19	38	1.74
3866204--3866243	21	1.9	21	84	0	53	67	7	7	17	1.38
3866956--3867025	33	2.1	33	86	0	95	40	8	27	24	1.84
3876484--3876524	19	2.0	21	86	9	59	21	4	14	58	1.55
3876615--3876664	21	2.3	23	89	6	77	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3876689--3876722	18	1.9	17	94	5	59	67	0	0	32	0.91
3883545--3883593	23	2.1	23	81	7	55	73	4	12	10	1.22
3886171--3886215	19	2.4	19	85	7	56	60	2	0	37	1.09
3899977--3900025	17	2.8	17	79	17	55	71	12	14	2	1.23
3899981--3900024	16	2.6	17	85	7	54	70	13	13	2	1.26
3912613--3912671	30	2.0	30	96	0	109	40	3	22	33	1.70
3919559--3919591	6	5.5	6	92	0	57	33	12	15	39	1.84
3921824--3921879	17	3.7	15	76	17	53	23	1	7	67	1.24
3921910--3921968	21	2.9	21	73	12	59	23	8	5	62	1.43
3921954--3922001	15	2.9	16	77	17	53	25	8	0	66	1.19
3922298--3922358	27	2.3	26	85	2	77	34	9	0	55	1.33
3929181--3929214	13	2.4	15	90	9	54	79	11	0	8	0.94
3933849--3933925	38	2.0	38	87	5	111	18	29	25	25	1.98
3934617--3934684	35	1.9	35	87	0	100	23	16	14	45	1.84
3942197--3942221	2	12.5	2	100	0	50	52	0	48	0	1.00
3944845--3944875	15	2.1	15	100	0	62	48	25	6	19	1.72
3955961--3955989	2	14.5	2	100	0	58	51	0	0	48	1.00
3965433--3965458	7	3.7	7	100	0	52	26	0	46	26	1.53
3965904--3965939	2	18.5	2	94	5	65	52	0	0	47	1.00
3966865--3966930	34	1.9	34	82	11	82	51	3	4	40	1.38
3966864--3966955	35	2.7	34	78	11	82	50	2	5	42	1.37
3970551--3970595	10	4.5	10	82	17	58	71	8	2	17	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3986120--3986165	24	1.9	25	82	8	60	13	21	6	58	1.57
3998960--3999007	24	2.0	24	92	4	80	45	0	4	50	1.21
3999105--3999145	12	3.2	12	83	12	55	39	0	0	60	0.96
4007008--4007032	3	8.3	3	100	0	50	32	32	0	36	1.58
4007734--4007770	12	3.2	12	88	7	58	48	0	51	0	1.00
4008560--4008591	2	16.0	2	93	0	55	50	3	0	46	1.17
4014700--4014754	18	2.8	20	81	8	69	43	0	1	54	1.10
4015925--4016001	31	2.6	30	79	6	95	19	19	12	48	1.81
4022975--4023020	24	1.9	24	82	8	58	54	2	2	41	1.25
4023038--4023084	23	2.1	22	84	7	60	63	2	0	34	1.06
4026420--4026504	2	45.0	2	86	11	126	54	0	0	45	1.00
4026420--4026504	25	3.3	26	93	4	138	54	0	0	45	1.00
4028013--4028037	2	12.5	2	100	0	50	48	0	0	52	1.00
4042931--4042957	13	2.1	13	100	0	54	14	0	29	55	1.40
4059237--4059312	37	2.1	37	82	4	93	46	5	2	46	1.39
4060730--4060803	37	2.0	37	94	2	132	35	27	25	12	1.91
4062386--4062423	10	3.7	11	83	16	55	44	0	0	55	0.99
4078383--4078407	13	1.9	13	100	0	50	12	0	0	88	0.53
4078372--4078412	15	2.7	15	81	11	57	14	2	0	82	0.76
4078533--4078563	3	10.3	3	100	0	62	32	0	0	67	0.91
4078617--4078755	41	3.3	42	87	7	185	48	17	8	25	1.76
4079238--4079342	46	2.3	45	82	8	122	40	13	8	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4079269--4079411	67	2.1	67	84	0	178	37	13	8	40	1.75
4079336--4079589	46	5.5	46	85	0	312	37	12	10	40	1.77
4079339--4079589	91	2.7	91	85	1	322	37	12	10	39	1.77
4079264--4079502	21	10.6	22	69	17	100	38	12	10	38	1.78
4079336--4079589	137	1.9	137	86	0	364	37	12	10	40	1.77
4081004--4081047	23	1.9	23	90	9	72	27	22	4	45	1.72
4081140--4081322	71	2.6	71	89	1	260	30	19	7	42	1.79
4081923--4081980	23	2.5	24	83	10	68	10	12	0	77	0.99
4081946--4081992	8	6.3	7	81	18	51	14	4	0	80	0.85
4081939--4081981	15	2.7	16	85	10	61	11	6	0	81	0.87
4081947--4081992	14	3.1	14	87	6	56	15	4	0	80	0.86
4086496--4086534	14	2.9	13	81	7	51	5	5	2	87	0.75
4087083--4087128	18	2.5	19	76	16	53	43	26	0	30	1.55
4091126--4091189	33	1.9	33	90	0	101	42	9	6	42	1.62
4091112--4091174	2	31.0	2	78	9	56	46	6	3	44	1.45
4103253--4103278	12	2.2	12	100	0	52	23	0	34	42	1.54
4107690--4107719	3	10.0	3	92	0	51	30	33	3	33	1.74
4113008--4113041	2	17.0	2	93	0	59	50	0	2	47	1.16
4115741--4115789	24	2.1	23	81	11	55	59	0	2	38	1.09
4116798--4116840	21	2.0	21	81	0	50	32	11	18	37	1.87
4117892--4117921	2	15.0	2	100	0	60	50	0	0	50	1.00
4118440--4118468	12	2.3	13	94	5	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4138980--4139012	5	6.8	5	86	6	50	36	0	3	60	1.12
4140508--4140564	23	2.5	22	80	11	60	50	0	1	47	1.11
4140717--4140742	11	2.4	11	100	0	52	65	0	0	34	0.93
4140719--4140767	17	2.9	17	84	3	55	51	0	0	48	1.00
4140850--4140875	11	2.4	11	100	0	52	57	0	0	42	0.98
4140974--4141045	19	3.8	20	75	18	64	38	6	1	52	1.37
4140984--4141050	29	2.3	29	86	0	89	38	5	1	53	1.34
4140997--4141085	25	3.4	25	77	11	88	34	5	3	56	1.40
4140976--4141047	10	7.6	10	72	14	55	37	6	1	54	1.36
4147707--4147744	19	2.1	19	85	5	51	63	0	7	28	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100