genome.fa.s113.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  70  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15884576--15884628	26	2.0	26	92	0	88	30	26	16	26	1.97
15885102--15885604	159	3.2	157	77	5	386	20	26	30	23	1.98
15885578--15885630	26	2.0	26	85	7	72	28	22	20	28	1.99
15885654--15885686	12	2.8	12	95	0	57	33	24	36	6	1.80
15886128--15886180	26	2.0	26	82	13	65	28	24	16	30	1.97
15887491--15887543	26	2.0	26	92	7	90	26	26	20	26	1.99
15888054--15888360	158	1.9	158	83	1	391	19	27	31	21	1.97
15888337--15888386	26	1.9	26	84	8	66	30	20	16	34	1.94
15888564--15888616	26	2.0	26	89	7	81	28	24	18	28	1.98
15889570--15889622	26	2.0	26	89	7	81	28	24	18	28	1.98
15889300--15889873	184	3.1	182	80	7	637	22	28	27	22	1.99
15889300--15889834	180	2.9	178	82	6	621	22	27	26	22	1.99
15889750--15889802	26	2.0	26	96	0	97	26	24	20	28	1.99
15889974--15889998	11	2.3	11	100	0	50	28	32	32	8	1.86
15890579--15890631	25	2.1	26	89	3	81	26	30	18	24	1.98
15890668--15891119	159	2.9	159	74	10	433	19	26	29	24	1.98
15891091--15891142	26	2.0	26	82	14	63	32	25	13	28	1.93
15891802--15891855	26	2.1	26	92	0	90	27	29	18	24	1.98
15892307--15892358	26	2.0	26	88	7	79	32	21	17	28	1.96
15893186--15893238	26	2.0	26	92	7	90	26	20	20	32	1.98
15894410--15894462	26	2.0	26	89	7	81	28	24	18	28	1.98
15895698--15895748	26	2.0	26	84	7	68	31	19	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15895728--15896085	159	2.3	157	77	7	373	20	27	30	21	1.98
15896197--15896249	26	2.0	26	92	0	88	24	26	18	30	1.98
15896406--15896458	26	2.0	26	92	0	88	28	24	18	28	1.98
15897452--15897504	26	2.0	26	85	7	72	26	24	18	30	1.98
15897636--15897687	26	2.0	26	85	7	70	26	23	17	32	1.96
15898572--15898819	134	1.8	135	82	2	320	20	28	27	23	1.99
15898804--15898871	26	2.6	26	90	0	109	30	20	19	29	1.97
15899039--15899091	26	2.0	26	92	7	90	26	26	20	26	1.99
15899142--15899568	158	2.7	157	77	5	430	18	27	28	24	1.98
15899748--15899800	26	2.0	26	88	0	79	28	26	18	26	1.98
15898830--15900119	710	1.8	711	82	3	1682	20	26	28	24	1.99
15900953--15901317	159	2.3	159	82	6	420	18	26	30	23	1.98
15901290--15901342	26	2.0	26	89	7	81	28	24	18	28	1.98
15902368--15902420	26	2.0	26	85	7	72	28	22	20	28	1.99
15903431--15903483	26	2.0	26	85	7	72	28	22	20	28	1.99
15904847--15904899	26	2.0	26	89	7	81	28	24	18	28	1.98
15904542--15905070	197	2.7	195	87	2	747	22	25	27	24	1.99
15905223--15905278	26	2.2	26	93	0	94	28	23	17	30	1.97
15905642--15906331	355	1.9	355	84	1	907	20	27	27	24	1.99
15906195--15906529	159	2.1	158	81	2	386	18	27	30	24	1.98
15906108--15906576	158	3.0	158	76	4	469	18	26	30	24	1.98
15906916--15906968	26	2.0	26	88	0	79	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15909354--15909415	24	2.6	24	97	0	115	24	32	20	22	1.98
15911768--15911820	26	2.0	26	89	7	81	26	22	20	30	1.98
15911967--15912017	26	2.0	26	92	0	84	27	27	19	25	1.99
15913033--15913082	26	1.9	26	91	0	82	26	28	20	26	1.99
15913240--15913291	25	2.0	26	88	3	79	28	25	19	26	1.98
15915007--15915059	26	2.0	26	88	0	79	30	28	16	24	1.97
15915350--15915402	26	2.0	26	89	7	81	28	24	18	28	1.98
15915904--15915956	26	2.0	26	89	7	81	28	24	18	28	1.98
15916476--15916528	26	2.0	26	92	0	88	28	28	18	24	1.98
15916680--15916732	26	2.0	26	85	0	70	28	26	16	28	1.97
15917023--15917075	26	2.0	26	89	7	81	26	26	20	26	1.99
15917968--15918020	26	2.0	26	85	7	72	28	26	18	26	1.98
15918380--15918432	26	2.0	26	89	7	81	30	28	16	24	1.97
15917955--15918464	206	2.5	204	78	6	519	23	25	26	23	2.00
15918723--15918775	26	2.0	26	82	7	63	26	22	22	28	1.99
15919945--15919997	26	2.0	26	85	0	70	26	22	20	30	1.98
15920129--15920181	26	2.0	26	85	0	70	28	28	18	24	1.98
15919787--15920327	184	2.9	181	77	4	512	19	26	28	25	1.99
15920908--15921343	181	2.4	181	81	6	486	21	24	27	25	1.99
15921290--15921342	26	2.0	26	85	7	72	24	24	22	28	2.00
15922014--15922066	26	2.0	26	89	7	81	28	26	18	26	1.98
15923096--15923750	159	4.1	160	74	8	516	20	26	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15924208--15924260	26	2.0	26	85	7	72	26	24	20	28	1.99
15923670--15924592	483	1.9	482	83	2	1183	21	26	27	24	1.99
15924386--15924749	158	2.3	158	79	6	396	19	24	30	25	1.98
15924322--15924749	159	2.7	157	78	7	447	18	25	30	25	1.98
15925862--15925914	26	2.0	26	88	0	79	28	30	18	22	1.98
15926204--15926255	26	2.0	26	85	7	70	26	25	17	30	1.97
15926953--15927346	159	2.5	157	74	5	353	23	24	28	22	1.99
15927428--15927480	26	2.0	26	85	7	72	28	24	16	30	1.97
15927650--15927702	26	2.0	26	89	7	81	28	26	18	26	1.98
15927807--15928175	159	2.3	159	80	3	397	18	26	30	24	1.98
15928149--15928201	26	2.0	26	88	0	79	28	26	18	26	1.98
15928495--15928547	26	2.0	26	89	7	81	28	24	18	28	1.98
15927906--15928548	344	1.9	344	81	2	788	19	25	29	25	1.99
15929173--15929225	26	2.0	26	85	7	72	28	18	20	32	1.97
15928492--15929809	666	2.0	671	87	4	1917	28	21	22	27	1.99
15929898--15929948	26	2.0	26	84	0	66	27	23	15	33	1.95
15929924--15930424	158	3.2	158	76	3	531	20	27	28	22	1.99
15930398--15930450	26	2.0	26	92	7	90	26	26	20	26	1.99
15930240--15930609	184	2.0	184	86	2	510	20	26	29	23	1.99
15931822--15931874	26	2.0	26	96	0	97	26	28	20	24	1.99
15932135--15932187	26	2.0	26	89	7	81	28	24	18	28	1.98
15932360--15932395	12	2.9	12	95	4	63	13	25	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15932745--15932802	26	2.2	27	81	12	75	25	24	20	29	1.99
15932947--15932999	26	2.0	26	96	0	97	26	28	20	24	1.99
15932675--15933031	197	1.8	197	82	2	466	22	28	26	22	1.99
15932973--15933317	159	2.2	157	82	5	401	20	26	29	23	1.98
15933130--15934857	887	2.0	876	87	2	2514	25	23	24	26	2.00
15934889--15934941	26	2.0	26	88	0	79	33	26	15	24	1.95
15935231--15935283	26	2.0	26	92	7	90	26	24	20	28	1.99
15935757--15935809	26	2.0	26	89	7	81	28	24	18	28	1.98
15935953--15936005	26	2.0	26	89	7	81	28	24	20	26	1.99
15935725--15936883	537	2.2	537	82	3	1343	22	26	27	23	1.99
15936833--15936883	26	2.0	26	88	7	77	31	25	11	31	1.92
15937553--15937605	26	2.0	26	88	0	79	35	26	11	26	1.90
15938252--15938304	26	2.0	26	86	13	74	28	24	16	30	1.97
15944494--15944545	26	2.0	26	85	7	70	28	26	17	26	1.97
15945214--15945266	26	2.0	26	88	0	79	30	28	16	24	1.97
15945976--15946476	159	3.2	156	76	4	495	19	27	29	23	1.98
15946450--15946502	26	2.0	26	92	7	90	26	24	20	28	1.99
15947171--15947226	26	2.2	26	90	0	85	30	28	17	23	1.97
15947517--15947569	26	2.0	26	89	7	81	28	24	18	28	1.98
15947138--15947891	348	2.2	342	81	5	836	19	27	29	23	1.99
15947543--15947933	159	2.4	158	75	5	390	20	26	30	22	1.98
15948023--15948075	26	2.0	26	89	7	81	26	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15948233--15948285	26	2.0	26	92	0	88	28	28	18	24	1.98
15948577--15948629	26	2.0	26	96	0	97	28	24	20	26	1.99
15951200--15951564	159	2.3	160	78	6	391	21	24	28	25	1.99
15951734--15951785	26	2.0	26	92	0	86	28	28	17	25	1.97
15951917--15951969	26	2.0	26	86	13	74	30	24	16	28	1.97
15952857--15952907	26	2.0	26	88	7	77	31	27	13	27	1.94
15953357--15953409	26	2.0	26	89	7	81	28	22	18	30	1.98
15953495--15953896	158	2.5	159	79	3	389	19	26	28	24	1.99
15954590--15954642	26	2.0	26	92	0	88	30	26	16	26	1.97
15954756--15955118	157	2.3	158	79	6	394	20	25	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100