genome.fa.s113.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  87  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17539632--17540042	59	7.0	58	77	8	393	36	9	6	48	1.61
17539632--17540042	118	3.5	118	81	8	437	36	9	6	48	1.61
17540097--17540160	27	2.6	24	80	9	67	67	6	4	21	1.32
17543632--17543683	3	17.3	3	83	0	50	9	0	21	69	1.17
17543629--17543683	9	6.1	9	82	0	65	10	0	20	69	1.18
17543641--17543696	18	3.1	18	82	5	69	12	1	17	67	1.30
17548067--17548117	16	3.2	16	75	10	50	33	1	5	58	1.33
17550537--17550608	37	2.0	35	83	5	90	47	4	2	45	1.36
17550889--17550940	26	2.0	26	100	0	104	30	11	15	42	1.82
17552282--17552325	23	1.9	23	85	0	61	31	9	0	59	1.29
17553048--17553121	5	14.8	5	77	16	57	4	1	13	81	0.91
17553086--17553122	17	2.2	17	100	0	74	0	0	16	83	0.64
17553048--17553121	22	3.2	22	80	16	78	4	1	13	81	0.91
17554129--17554162	16	2.1	17	88	5	52	2	0	8	88	0.62
17554129--17554162	11	3.0	11	87	8	50	2	0	8	88	0.62
17554157--17554182	11	2.4	11	100	0	52	7	7	23	61	1.49
17554204--17554240	19	2.0	19	89	5	58	40	0	24	35	1.55
17555151--17555254	39	2.6	41	79	8	117	39	8	10	41	1.70
17555307--17555416	41	2.7	41	80	9	127	43	9	10	36	1.72
17555020--17555436	40	10.4	40	71	11	219	36	11	14	37	1.82
17556210--17556242	6	5.7	6	89	3	50	0	15	0	84	0.61
17556388--17556427	3	13.3	3	89	0	62	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559677--17559717	21	1.9	22	85	5	57	9	4	7	78	1.10
17559666--17559744	30	2.7	30	77	18	78	8	5	7	78	1.08
17565627--17565836	106	2.0	106	99	0	411	38	10	14	36	1.80
17567311--17567363	24	2.2	24	93	3	90	56	9	7	26	1.57
17570332--17570506	71	2.5	69	81	8	176	44	5	8	42	1.57
17570403--17570536	70	1.9	70	83	3	171	44	6	8	40	1.61
17571099--17571135	10	4.0	10	83	16	53	59	0	0	40	0.97
17572293--17572335	22	1.9	23	85	4	61	30	13	0	55	1.39
17574666--17574696	11	2.8	11	100	0	62	9	0	16	74	1.07
17574706--17574737	17	1.9	17	93	6	57	9	6	15	68	1.36
17574667--17574768	11	9.5	10	69	15	53	4	3	16	74	1.14
17574933--17575084	78	1.9	78	90	0	241	42	21	9	27	1.83
17575019--17575226	104	2.0	104	82	1	256	41	14	11	32	1.81
17575352--17575625	41	6.8	37	68	20	119	37	9	13	39	1.78
17575351--17575566	81	2.7	79	73	13	194	37	8	13	40	1.76
17576078--17576163	31	2.7	31	83	5	111	39	17	16	26	1.90
17576365--17576401	18	2.1	18	90	10	58	0	13	2	83	0.74
17576549--17576586	3	12.7	3	100	0	76	34	0	0	65	0.93
17579911--17579947	19	2.0	19	89	5	58	45	0	18	35	1.50
17580900--17580936	17	2.2	18	90	9	60	64	8	8	18	1.45
17585881--17585938	26	2.3	25	85	8	73	58	1	1	37	1.18
17589911--17590796	161	5.5	161	79	5	819	42	15	9	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17589785--17590796	321	3.1	320	80	6	941	42	15	9	32	1.79
17589911--17590796	482	1.8	484	81	4	1108	42	15	9	32	1.80
17591601--17591637	13	2.8	13	87	0	56	62	5	8	24	1.44
17592289--17592332	22	2.0	22	100	0	88	45	9	18	27	1.79
17593898--17593940	21	2.0	21	90	0	68	44	20	6	27	1.77
17607437--17607692	62	4.1	62	73	10	193	34	12	10	42	1.77
17607949--17608053	49	2.1	49	81	10	126	33	9	16	40	1.80
17614942--17614977	16	2.2	16	90	0	54	22	22	5	50	1.70
17615001--17615079	32	2.5	31	83	2	95	24	13	10	51	1.72
17616882--17616956	28	2.7	28	79	4	71	16	25	25	33	1.95
17617004--17617040	16	2.2	17	86	13	51	27	0	0	72	0.84
17618093--17618162	3	22.7	3	74	11	61	30	1	1	67	1.08
17618093--17618165	12	6.1	13	74	16	68	30	1	1	67	1.08
17618654--17618697	21	2.0	21	86	4	61	45	31	0	22	1.53
17618628--17618698	29	2.4	30	83	4	92	49	30	0	19	1.49
17618649--17618718	29	2.4	29	82	2	77	47	28	2	21	1.65
17618707--17618769	22	2.8	21	83	13	74	50	22	4	22	1.67
17618714--17618777	22	2.9	22	83	4	67	50	25	3	21	1.64
17631545--17631667	35	3.5	35	77	2	131	24	21	10	43	1.84
17631492--17631633	34	4.2	34	75	6	117	23	23	9	43	1.82
17631509--17631640	69	1.9	68	87	1	192	23	22	9	43	1.83
17631509--17631668	69	2.3	69	83	2	187	23	23	9	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17631622--17631703	35	2.4	34	78	11	85	23	23	9	43	1.83
17632605--17632675	28	2.6	27	73	13	72	29	46	8	15	1.75
17633024--17633052	10	2.7	11	89	10	51	86	0	13	0	0.58
17633601--17633625	12	2.1	12	100	0	50	24	0	0	76	0.80
17633604--17633664	15	3.9	15	76	16	61	29	3	0	67	1.07
17634102--17634198	28	3.4	28	78	12	99	49	28	0	21	1.50
17634131--17634182	16	3.5	16	70	24	51	42	32	0	25	1.55
17634168--17634221	22	2.5	22	82	11	58	53	25	0	20	1.45
17634175--17634221	14	3.2	15	82	8	53	57	25	0	17	1.40
17635427--17635464	20	1.9	20	84	10	51	36	0	23	39	1.55
17635580--17635669	44	2.0	44	95	0	162	36	4	22	36	1.74
17635602--17635668	20	3.2	20	68	15	53	38	2	22	35	1.70
17639445--17639492	15	3.2	16	75	19	50	47	0	0	52	1.00
17639445--17639517	29	2.6	28	79	12	69	46	4	0	49	1.21
17640934--17640974	12	3.2	13	86	10	57	63	0	0	36	0.95
17640968--17641012	19	2.4	19	80	0	54	46	2	6	44	1.42
17642021--17642089	9	7.3	9	73	9	57	47	1	1	49	1.19
17642044--17642082	20	1.9	20	89	5	60	43	2	2	51	1.29
17642021--17642100	29	2.8	28	81	5	88	50	1	2	46	1.23
17642112--17642154	9	4.7	9	82	2	50	62	6	0	30	1.21
17642112--17642154	18	2.3	19	88	4	70	62	6	0	30	1.21
17642145--17642185	22	1.9	22	95	5	75	41	4	2	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17642145--17642227	22	4.0	22	73	10	68	45	9	1	43	1.44
17642139--17642266	22	6.2	22	69	12	67	50	9	0	39	1.40
17642284--17642312	10	2.7	11	89	10	51	41	0	0	58	0.98
17642625--17642767	9	15.4	9	76	13	103	41	1	4	52	1.29
17642635--17642761	10	13.6	10	75	15	78	43	0	3	51	1.25
17642681--17642759	8	9.0	8	77	15	59	41	0	5	53	1.23
17642780--17642842	30	2.1	30	85	8	85	33	4	6	55	1.46
17642817--17642857	20	2.0	20	86	9	57	36	4	9	48	1.58
17642884--17642921	20	2.0	20	89	5	60	55	2	10	31	1.48
17642911--17643028	9	12.4	9	73	16	60	33	1	5	60	1.29
17642911--17643029	10	12.4	10	74	12	81	32	1	5	60	1.28
17642970--17643028	17	3.4	17	85	4	73	32	1	1	64	1.13
17644531--17644572	21	2.0	22	85	4	59	59	4	0	35	1.19
17644764--17644819	22	2.7	21	81	8	62	46	0	1	51	1.11
17645173--17645206	14	2.4	14	85	0	50	52	0	0	47	1.00
17651029--17651105	25	3.5	21	73	16	66	14	40	7	37	1.75
17656855--17656882	2	14.0	2	100	0	56	50	0	0	50	1.00
17660892--17660935	22	2.0	22	95	0	79	43	13	11	31	1.80
17664378--17664412	18	1.9	18	88	0	52	37	25	14	22	1.92
17664584--17664668	23	3.6	23	91	3	125	40	18	27	14	1.89
17664816--17664859	22	2.0	22	95	0	79	43	13	11	31	1.80
17681252--17681306	27	2.1	26	83	10	67	47	0	16	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17684864--17684912	19	2.5	20	90	3	82	53	4	20	22	1.63
17686752--17686784	11	3.1	11	86	8	50	54	3	9	33	1.47
17686826--17686875	22	2.3	22	79	6	57	58	6	0	36	1.23
17686998--17687122	64	2.0	64	88	6	191	39	21	18	20	1.93
17689881--17690079	95	2.1	95	99	0	389	33	22	14	29	1.94
17690193--17690249	20	2.8	20	94	0	96	31	26	21	21	1.98
17699468--17699510	18	2.4	18	92	0	68	27	23	9	39	1.85
17699966--17700064	49	2.0	50	82	5	121	33	12	19	35	1.88
17700450--17700478	6	5.0	6	91	8	51	65	0	0	34	0.93
17702789--17702833	3	15.0	3	100	0	90	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100