genome.fa.s113.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  46  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11533570--11533638	35	1.9	36	82	2	86	27	0	14	57	1.37
11533690--11533736	10	4.6	10	78	5	58	14	0	17	68	1.22
11533691--11533737	11	4.5	11	76	10	53	12	0	17	70	1.17
11533686--11533800	31	3.7	31	78	6	124	13	0	19	66	1.24
11533724--11533776	22	2.4	23	81	12	67	11	0	16	71	1.13
11533970--11534030	23	2.7	23	76	0	59	36	0	16	47	1.47
11533995--11534068	24	3.1	24	86	1	96	35	0	6	58	1.25
11536722--11536765	18	2.4	19	84	3	54	59	15	4	20	1.54
11537185--11537260	6	13.0	6	76	13	70	77	3	0	18	0.92
11537553--11537626	13	5.8	12	70	17	51	70	1	0	28	0.96
11537554--11537608	20	2.6	23	77	16	64	70	1	0	27	0.97
11539379--11539425	20	2.6	19	84	15	64	53	0	0	46	1.00
11544415--11544442	3	9.3	3	100	0	56	35	0	0	64	0.94
11545298--11545362	25	2.7	24	79	9	78	55	0	0	44	0.99
11546068--11546098	9	3.3	9	95	4	53	77	0	3	19	0.90
11554676--11554731	24	2.3	25	84	3	78	64	0	1	33	1.04
11554784--11554828	21	2.1	21	87	0	63	44	0	2	53	1.13
11554932--11554982	11	4.6	11	78	7	50	49	0	3	47	1.20
11554951--11554995	22	2.1	21	84	12	56	44	2	2	51	1.26
11555446--11555517	35	2.2	33	82	9	85	31	16	13	37	1.88
11555962--11555995	16	2.1	16	88	0	50	38	0	8	52	1.33
11556554--11556584	16	1.9	16	93	0	53	38	6	6	48	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11558037--11558098	27	2.3	27	86	5	81	45	0	0	54	0.99
11562536--11562645	56	2.0	56	85	0	148	35	17	13	33	1.89
11571676--11571733	27	2.1	27	100	0	98	43	6	25	24	1.79
11571919--11571961	22	2.0	22	86	9	61	32	9	9	48	1.67
11573142--11573258	57	2.1	57	98	0	225	29	16	11	42	1.83
11576031--11576074	22	2.0	22	86	0	61	38	9	6	45	1.63
11584284--11584317	11	3.2	11	83	8	52	26	0	0	73	0.83
11589247--11589318	27	2.5	29	82	8	94	61	12	5	20	1.51
11601761--11601799	14	2.9	14	88	7	55	76	5	5	12	1.11
11601827--11601856	8	3.6	8	91	8	51	23	0	13	63	1.29
11601975--11602014	20	2.0	20	85	0	53	45	17	7	30	1.76
11603821--11603845	2	12.5	2	100	0	50	0	48	0	52	1.00
11603845--11603871	2	13.5	2	100	0	54	48	0	0	51	1.00
11607243--11607337	38	2.4	40	79	10	97	47	8	8	35	1.64
11607455--11607513	24	2.5	24	88	5	84	52	13	3	30	1.57
11607632--11607705	33	2.3	33	90	2	114	54	9	5	31	1.55
11607644--11607771	53	2.4	53	81	6	159	54	8	5	31	1.53
11607718--11607794	33	2.4	33	91	2	120	54	10	5	29	1.56
11607720--11607918	32	6.4	32	73	13	157	53	11	5	29	1.59
11607600--11607791	86	2.2	86	99	0	375	53	9	5	31	1.58
11607793--11607938	56	2.6	56	84	5	190	52	11	5	30	1.60
11607890--11607938	22	2.3	22	83	13	66	51	10	6	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11607974--11608033	32	1.9	31	89	3	93	58	13	5	23	1.55
11607997--11608038	20	2.1	20	86	0	57	57	9	4	28	1.51
11608017--11608159	24	6.0	24	72	14	118	53	9	4	32	1.53
11608030--11608114	29	3.1	29	78	20	94	51	7	4	36	1.50
11608084--11608129	20	2.2	20	84	3	56	56	13	2	28	1.48
11608117--11608159	21	2.0	21	86	0	59	55	13	2	27	1.51
11608142--11608188	17	2.8	17	77	9	51	53	10	8	27	1.64
11608154--11608192	16	2.5	15	80	12	51	48	7	10	33	1.66
11608818--11608851	11	2.9	12	86	8	52	70	8	0	20	1.13
11608812--11608869	30	1.9	30	82	6	73	72	6	0	20	1.07
11608814--11608864	12	4.4	12	78	7	52	72	7	0	19	1.08
11609139--11609374	42	5.6	41	77	9	199	39	17	11	30	1.86
11609139--11609374	85	2.8	84	79	8	271	39	17	11	30	1.86
11611991--11612082	27	3.3	27	65	21	71	39	14	5	41	1.68
11611992--11612397	59	6.9	59	87	5	502	34	13	6	45	1.69
11612034--11612130	31	3.2	30	67	21	85	35	12	8	44	1.72
11612136--11612176	17	2.4	18	80	12	50	43	0	4	51	1.23
11612520--11612560	4	10.0	4	86	5	55	78	2	0	19	0.87
11613402--11613464	27	2.4	25	86	7	81	73	4	11	11	1.24
11613456--11613573	22	5.2	22	69	18	80	68	3	3	24	1.20
11613457--11613540	43	2.0	42	88	6	125	70	3	3	22	1.19
11613516--11613570	14	3.7	15	80	11	60	67	1	1	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11613458--11613573	23	5.2	20	69	21	63	68	3	3	25	1.21
11613455--11613583	24	5.5	24	68	21	87	67	3	3	25	1.22
11613656--11613697	12	3.5	12	75	12	50	78	4	4	11	1.06
11613844--11613877	7	4.9	7	89	10	52	11	2	0	85	0.71
11613853--11613877	13	1.9	13	100	0	50	12	0	0	88	0.53
11613908--11614390	41	11.5	41	87	4	653	37	21	16	24	1.93
11613908--11614390	84	5.8	83	88	4	679	37	21	16	24	1.93
11613908--11614390	125	3.8	123	87	4	678	37	21	16	24	1.93
11615642--11615710	7	10.1	7	72	12	54	10	15	0	73	1.08
11619581--11619969	59	6.6	58	84	8	482	35	13	7	42	1.73
11619582--11619960	118	3.2	118	91	1	573	35	12	7	43	1.72
11619581--11619989	177	2.3	176	89	6	598	35	13	7	43	1.73
11620010--11620101	5	18.2	5	71	20	59	77	2	5	15	1.05
11620010--11620090	6	13.5	6	72	18	53	77	2	6	13	1.05
11620021--11620091	36	1.9	38	86	11	103	77	2	7	12	1.08
11620019--11620090	17	4.1	17	74	11	65	77	2	6	12	1.07
11621007--11621070	25	2.6	24	76	16	76	73	6	10	9	1.25
11621007--11621079	27	2.7	25	81	12	74	72	6	10	9	1.27
11621082--11621188	23	4.5	24	70	19	73	68	2	2	26	1.17
11621081--11621159	17	4.8	16	72	17	54	70	1	2	25	1.07
11621061--11621178	44	2.6	45	81	14	136	69	2	3	24	1.16
11621268--11621321	24	2.2	24	84	12	67	79	3	3	12	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11621245--11621321	12	6.2	11	74	19	55	76	3	2	16	1.05
11621270--11621327	19	3.1	19	80	16	68	79	5	3	12	1.02
11621556--11621608	19	2.9	19	78	18	67	54	11	5	28	1.58
11621567--11621603	15	2.4	16	91	8	60	56	10	5	27	1.55
11621657--11621882	41	5.5	41	87	0	326	51	12	6	29	1.65
11621985--11622032	20	2.4	20	82	0	60	52	8	4	35	1.51
11622626--11622664	12	3.2	12	92	7	62	69	10	0	20	1.17
11623684--11623777	40	2.3	40	87	0	125	31	14	12	40	1.84
11624227--11624296	19	3.6	20	71	5	63	52	11	0	35	1.37
11624360--11624425	19	3.4	19	79	4	69	54	7	1	36	1.38
11624359--11624426	20	3.4	21	76	11	63	54	7	1	36	1.37
11624660--11624707	19	2.5	19	83	9	62	47	2	10	39	1.49
11624671--11624707	20	1.9	20	88	5	58	45	2	8	43	1.47
11624897--11624929	17	1.9	18	88	11	52	66	3	0	30	1.06
11625265--11625309	20	2.2	20	84	4	54	42	2	8	46	1.47
11625264--11625313	21	2.4	21	80	6	57	42	2	8	48	1.44
11625376--11625472	9	10.4	9	70	14	54	26	2	5	65	1.24
11625491--11625515	11	2.3	11	100	0	50	24	0	8	68	1.16
11625836--11625890	24	2.4	24	82	11	62	34	0	1	63	1.05
11625807--11625881	16	4.4	16	71	22	55	33	0	1	65	1.01
11625829--11625890	18	3.4	18	73	24	58	35	0	1	62	1.05
11625877--11625923	18	2.6	19	86	10	71	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11629382--11629419	2	19.0	2	84	10	51	47	0	2	50	1.15
11629376--11629424	14	3.5	14	81	10	64	44	2	4	48	1.33
11633750--11633784	3	11.7	3	100	0	70	34	0	0	65	0.93
11634501--11634728	122	1.9	120	91	3	377	35	14	7	41	1.76
11635626--11635661	18	2.0	18	88	0	54	0	22	0	77	0.76
11636430--11636460	2	15.5	2	93	0	53	51	0	0	48	1.00
11637482--11637516	17	2.1	17	88	0	52	40	0	0	60	0.97
11638880--11638908	7	4.1	7	100	0	58	58	0	0	41	0.98
11638880--11638920	21	2.0	21	85	0	55	51	2	0	46	1.14
11639589--11639767	93	1.9	94	84	7	240	35	20	8	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100