genome.fa.s113.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  38  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9997449--9997488	21	2.0	20	85	5	53	35	0	10	55	1.34
9997590--9997682	21	4.4	20	73	10	78	36	7	7	48	1.60
9997671--9997744	10	7.1	10	72	11	51	37	2	10	48	1.52
9998383--9998505	22	5.6	22	73	7	97	44	6	8	39	1.62
9998582--9998719	22	6.4	21	71	20	79	47	6	9	36	1.62
9998649--9998688	19	2.1	19	90	0	62	40	5	12	42	1.64
10004248--10004314	33	2.0	33	97	0	125	44	20	7	26	1.78
10005980--10006020	19	2.2	18	86	4	55	31	7	0	60	1.24
10009541--10009658	59	2.0	59	96	0	218	41	11	20	27	1.85
10011190--10011214	2	12.5	2	100	0	50	52	0	0	48	1.00
10014119--10014236	60	2.0	59	86	5	166	35	16	7	39	1.78
10018505--10018544	22	1.9	22	85	10	57	42	15	12	30	1.83
10019868--10019892	2	12.5	2	100	0	50	48	0	0	52	1.00
10021210--10021294	43	2.0	43	95	4	154	45	8	24	21	1.78
10023094--10023128	16	2.2	16	100	0	70	31	17	11	40	1.85
10027288--10027340	26	2.1	26	83	13	74	45	0	3	50	1.19
10038703--10038756	20	2.6	21	85	14	76	51	0	0	48	1.00
10039293--10039341	25	2.0	24	84	11	64	51	4	0	44	1.20
10039513--10039616	33	3.1	32	74	10	84	44	5	5	44	1.52
10040251--10040278	2	14.0	2	100	0	56	50	0	0	50	1.00
10042387--10042458	30	2.4	30	76	2	74	58	1	0	40	1.07
10051637--10051668	4	8.0	4	100	0	64	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10053034--10053066	2	17.0	2	87	6	50	51	3	0	45	1.16
10053033--10053066	17	2.0	17	94	0	59	52	2	0	44	1.16
10053036--10053065	15	2.0	15	93	0	51	53	3	0	43	1.17
10054140--10054238	44	2.2	44	83	5	137	40	3	6	50	1.42
10055977--10056052	40	1.9	40	97	0	143	51	17	7	23	1.71
10067996--10068031	16	2.2	16	100	0	72	41	41	5	11	1.64
10068777--10068802	12	2.2	12	100	0	52	30	15	0	53	1.42
10068981--10069022	20	2.0	21	86	4	59	42	4	0	52	1.22
10069053--10069104	18	2.6	20	80	14	54	46	3	3	46	1.39
10071690--10071728	16	2.4	16	82	0	51	51	5	7	35	1.53
10073834--10073868	14	2.5	14	90	0	52	25	0	2	71	1.00
10073839--10073890	24	2.3	22	74	12	52	25	1	1	71	1.07
10074818--10074863	24	1.9	24	100	0	92	67	0	0	32	0.91
10074813--10074869	24	2.4	25	88	8	91	64	0	1	33	1.04
10074834--10074873	20	2.0	20	85	0	53	67	0	0	32	0.91
10074813--10074877	12	5.4	12	77	22	66	64	0	1	33	1.03
10079697--10079750	15	3.5	16	78	12	51	20	5	12	61	1.52
10085937--10085983	21	2.2	22	84	3	60	34	4	4	57	1.38
10091089--10091165	30	2.6	31	72	19	74	57	3	1	37	1.26
10091224--10091278	19	2.9	19	84	7	76	3	27	0	69	1.05
10093265--10093294	11	2.7	11	89	0	51	60	10	0	30	1.30
10094985--10095013	14	2.1	14	100	0	58	24	20	13	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10097708--10097780	34	2.1	34	82	0	92	42	8	13	35	1.74
10099618--10099648	15	2.1	15	93	0	53	32	9	35	22	1.87
10105970--10107816	373	5.0	371	96	2	3409	24	14	21	39	1.91
10105970--10107816	738	2.5	735	96	1	3359	24	14	21	39	1.91
10111351--10111379	14	2.0	15	93	6	51	20	6	6	65	1.40
10120661--10120701	3	13.7	3	84	0	55	65	0	2	31	1.05
10122470--10122548	38	2.1	38	83	4	97	65	7	1	25	1.26
10122536--10122596	26	2.2	27	82	11	70	62	4	1	31	1.26
10122776--10122817	19	2.2	19	95	0	75	19	2	0	78	0.86
10122860--10122956	32	2.9	33	77	13	85	39	2	4	54	1.31
10123135--10123176	19	2.3	19	87	4	59	30	0	2	66	1.04
10123135--10123193	9	6.3	9	82	7	55	28	1	6	62	1.30
10123639--10123664	13	2.0	13	100	0	52	61	0	15	23	1.33
10125862--10125913	27	1.9	28	84	7	72	21	13	3	61	1.48
10126654--10126707	20	2.5	22	79	11	76	55	14	3	25	1.56
10127855--10127898	17	2.5	18	77	3	54	18	6	2	72	1.17
10128314--10128764	225	2.0	217	88	4	661	32	10	17	38	1.84
10129346--10129439	46	2.1	44	82	9	109	38	5	2	54	1.35
10129408--10129492	44	1.9	44	84	13	113	38	1	3	56	1.24
10129511--10129560	19	2.6	19	80	3	55	32	4	2	62	1.25
10130786--10130820	19	1.9	18	88	11	54	25	11	5	57	1.56
10132452--10132553	47	2.3	45	85	8	129	47	6	11	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10135498--10135535	2	19.5	2	94	5	69	0	47	0	52	1.00
10151311--10151355	18	2.6	17	80	16	56	37	8	0	53	1.32
10151319--10151355	18	2.1	18	90	10	58	32	10	0	56	1.34
10151689--10151748	29	2.1	29	83	0	75	45	3	0	51	1.17
10151780--10151831	22	2.5	20	79	11	59	28	0	1	69	0.99
10151792--10151842	15	3.6	14	80	12	52	29	0	1	68	1.00
10151792--10151837	22	2.1	22	84	8	58	28	0	2	69	1.00
10157768--10157889	16	7.9	16	71	18	89	45	0	0	54	1.05
10157858--10157897	20	2.0	20	85	9	55	47	0	0	52	1.00
10158290--10158316	2	13.5	2	100	0	54	48	0	0	51	1.00
10160144--10160196	16	3.1	16	83	8	52	54	0	0	45	0.99
10160138--10160212	17	4.3	17	75	11	62	52	0	0	48	1.00
10161746--10161934	64	3.0	63	89	6	292	35	10	18	35	1.85
10161744--10161932	63	3.0	63	89	5	292	35	10	18	35	1.84
10163152--10163208	26	2.2	26	81	12	64	63	10	1	24	1.36
10163666--10163710	21	2.1	21	83	0	54	51	4	2	42	1.34
10166512--10166556	23	2.0	23	81	0	54	42	6	0	51	1.28
10168292--10168331	20	2.0	21	90	5	64	70	2	0	27	1.01
10168687--10168723	2	18.5	2	100	0	74	0	48	0	51	1.00
10169326--10169367	2	21.0	2	100	0	84	0	50	0	50	1.00
10184615--10184686	10	6.7	11	72	16	62	51	0	0	48	1.00
10184641--10184680	22	1.9	21	90	10	64	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10184642--10184685	11	4.1	11	80	13	56	54	0	0	45	0.99
10187068--10187097	13	2.3	13	100	0	60	10	20	16	53	1.71
10189483--10189510	14	2.0	14	100	0	56	71	0	7	21	1.09
10189559--10189589	15	2.1	15	94	5	55	12	6	9	70	1.31
10189565--10189600	17	2.1	17	89	0	54	13	2	8	75	1.15
10189733--10189793	30	2.2	28	81	16	81	42	11	0	45	1.40
10189744--10189801	30	1.9	30	96	0	107	43	12	0	44	1.41
10191234--10191287	3	18.0	3	100	0	108	33	0	0	66	0.92
10192320--10192376	1	57.0	1	78	0	51	5	3	3	87	0.73
10192320--10192376	13	4.3	13	76	10	62	5	3	3	87	0.73
10192323--10192376	28	1.9	28	88	0	81	5	3	3	87	0.76
10192527--10192574	25	1.9	25	87	8	71	29	2	10	58	1.43
10193259--10193299	22	1.9	22	85	5	57	19	4	7	68	1.32
10193277--10193351	32	2.3	32	86	0	105	26	6	6	60	1.47
10194628--10194653	1	26.0	1	100	0	52	0	0	0	100	0.00
10194936--10194980	23	2.0	23	86	8	65	75	2	4	17	1.07
10194945--10194983	19	2.1	19	85	9	53	74	5	2	17	1.12
10198843--10198867	13	1.9	13	100	0	50	36	0	8	56	1.29
10206564--10206600	18	2.0	19	89	5	58	78	2	5	13	1.03
10206925--10206963	8	4.9	8	87	0	51	43	0	0	56	0.99
10206955--10207004	21	2.5	21	93	6	86	50	0	0	50	1.00
10210154--10210382	125	1.8	125	85	3	327	32	12	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10212500--10212692	54	3.5	53	76	10	183	28	13	10	47	1.75
10212892--10212929	20	1.9	20	94	0	67	13	0	5	81	0.85
10213139--10213173	4	8.8	4	87	0	52	74	5	0	20	1.02
10213135--10213169	16	2.2	16	94	0	61	74	8	0	17	1.06
10214290--10214565	44	6.3	43	82	5	311	44	19	11	23	1.84
10214287--10214567	132	2.1	132	83	3	352	44	19	11	24	1.83
10225918--10226118	112	1.8	111	83	6	273	26	9	8	55	1.61
10226009--10226111	54	1.9	54	84	5	138	27	12	6	53	1.63
10226290--10226325	19	1.9	19	88	5	56	11	0	5	83	0.80
10227525--10227687	81	2.0	81	91	2	265	19	22	6	51	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100