genome.fa.s113.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  24  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6924080--6924121	2	21.5	2	90	4	68	47	0	2	50	1.14
6928562--6928609	20	2.5	20	72	27	50	0	29	8	62	1.24
6936865--6936911	20	2.4	19	83	13	60	63	0	0	36	0.94
6937042--6937076	2	17.5	2	93	0	61	0	51	2	45	1.16
6943165--6943192	14	2.0	14	100	0	56	28	14	28	28	1.95
6945195--6945232	2	19.0	2	100	0	76	0	50	0	50	1.00
6949171--6949206	19	1.9	18	88	5	54	50	0	0	50	1.00
6950911--6950959	21	2.3	22	78	3	55	67	0	0	32	0.91
6950911--6950959	22	2.3	21	85	3	71	67	0	0	32	0.91
6951781--6951853	20	3.5	20	75	12	65	60	8	0	31	1.26
6951792--6951842	16	3.2	16	70	13	52	58	7	0	33	1.27
6965850--6965916	19	3.3	19	67	18	53	37	1	5	55	1.34
6965826--6965915	43	2.1	44	87	6	130	37	3	6	52	1.44
6965939--6965990	22	2.4	22	81	12	54	51	3	1	42	1.31
6969823--6969847	1	25.0	1	100	0	50	100	0	0	0	0.00
6969958--6969992	17	2.0	18	88	5	54	48	0	0	51	1.00
6975139--6975203	23	2.7	24	79	11	62	35	9	9	46	1.68
6976127--6976165	20	2.1	18	85	9	51	46	0	7	46	1.31
6981901--6981947	12	3.8	12	78	13	51	76	2	10	10	1.10
6994858--6994890	2	16.5	2	100	0	66	51	0	0	48	1.00
6997312--6997351	19	2.0	21	86	13	59	52	0	15	32	1.43
6997362--6997408	24	2.0	24	83	8	60	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6999962--7000005	3	14.7	3	100	0	88	65	0	0	34	0.93
7008153--7008180	14	2.0	14	100	0	56	28	7	21	42	1.79
7014355--7014458	34	3.1	33	77	5	100	34	14	13	37	1.85
7018821--7018903	41	2.0	41	100	0	166	26	12	34	26	1.91
7028314--7028343	2	15.0	2	92	0	51	50	3	0	46	1.18
7037796--7037846	16	3.3	15	72	10	50	52	0	1	45	1.12
7037926--7037997	29	2.4	29	86	4	99	51	0	1	47	1.09
7038101--7038156	29	2.0	27	86	6	76	50	0	1	48	1.11
7046462--7046496	17	2.0	18	88	5	54	14	0	2	82	0.77
7048602--7048628	3	9.0	3	100	0	54	66	0	0	33	0.92
7049530--7049571	2	21.0	2	100	0	84	50	0	0	50	1.00
7053554--7053626	38	2.1	37	85	14	102	34	2	10	52	1.51
7053820--7053856	18	2.0	19	89	5	58	59	0	5	35	1.20
7053750--7053941	93	2.0	95	90	5	302	51	1	3	44	1.24
7056377--7056563	94	2.0	94	89	0	284	23	22	23	29	1.99
7059960--7059992	16	2.1	16	88	11	50	69	0	21	9	1.15
7066159--7066193	18	1.9	18	88	0	52	77	0	17	5	0.96
7067390--7067428	19	2.0	20	85	5	53	69	5	2	23	1.21
7070303--7070362	14	4.0	14	74	19	50	33	1	0	65	1.03
7071766--7071824	6	9.8	6	80	12	50	23	0	0	76	0.79
7071769--7071807	3	12.7	3	89	5	60	28	0	0	71	0.86
7071845--7071894	7	7.1	7	77	8	57	0	26	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079739--7079782	11	4.1	11	85	5	54	34	0	18	47	1.49
7079746--7079792	21	2.2	20	82	10	58	27	0	21	51	1.48
7080512--7080541	15	2.0	15	93	0	51	63	0	16	20	1.31
7087227--7087258	3	10.7	3	100	0	64	34	0	0	65	0.93
7103556--7103630	29	2.6	29	75	10	80	45	1	2	50	1.24
7103703--7103746	18	2.4	18	84	0	61	18	4	2	75	1.09
7103931--7103958	12	2.3	12	100	0	56	14	0	0	85	0.59
7103932--7103970	9	4.2	9	83	3	51	15	2	0	82	0.79
7104473--7104538	33	2.0	33	82	5	80	48	6	12	33	1.65
7105290--7105605	164	1.9	163	87	1	454	39	11	19	29	1.87
7120833--7120970	67	2.0	68	91	4	226	43	15	7	34	1.74
7124841--7124866	2	13.0	2	100	0	52	50	0	0	50	1.00
7132070--7132108	4	9.8	4	94	0	69	25	0	20	53	1.45
7135475--7135626	78	1.9	79	85	4	209	34	20	14	30	1.92
7146855--7146905	21	2.4	21	83	0	66	11	1	3	82	0.89
7151537--7151565	14	2.0	15	93	6	51	55	10	13	20	1.68
7156851--7157164	120	2.6	121	87	4	438	45	9	7	38	1.64
7158300--7158476	90	2.0	90	89	2	275	37	16	14	30	1.89
7162320--7162346	13	2.1	13	100	0	54	62	0	0	37	0.95
7162660--7162688	11	2.5	12	94	5	51	37	0	0	62	0.96
7162949--7162987	9	4.3	9	81	12	53	56	0	0	43	0.99
7163069--7163179	58	1.9	57	81	5	134	30	4	6	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7171709--7171789	35	2.2	36	81	14	96	46	3	0	49	1.19
7171707--7171858	79	1.9	78	79	9	166	44	4	0	50	1.27
7172120--7172144	11	2.3	11	100	0	50	24	0	0	76	0.80
7173164--7173227	32	2.0	31	82	11	76	46	1	0	51	1.10
7173225--7173273	22	2.3	23	82	13	68	55	4	0	40	1.19
7175178--7175247	33	2.1	33	94	0	122	50	2	2	44	1.31
7178640--7178664	12	2.1	12	100	0	50	44	0	0	56	0.99
7178664--7178716	21	2.4	21	93	6	88	49	0	0	50	1.00
7183454--7183482	13	2.3	13	94	5	51	82	0	10	6	0.83
7185266--7185302	16	2.4	16	95	4	67	62	24	13	0	1.31
7189420--7189554	43	3.2	41	78	9	128	37	6	6	48	1.56
7189483--7189563	20	3.9	22	75	15	82	40	7	2	49	1.44
7189464--7189569	41	2.5	41	83	8	117	40	6	2	50	1.43
7189417--7189570	21	7.3	22	73	12	108	38	6	5	49	1.53
7189588--7189634	19	2.4	19	85	3	58	38	4	8	48	1.53
7189588--7189655	21	3.4	19	82	8	64	42	2	5	48	1.42
7204520--7204553	10	3.5	10	88	8	52	0	0	88	11	0.52
7206211--7206240	3	10.0	3	92	0	51	66	3	0	30	1.07
7206987--7207032	24	1.9	24	95	0	83	28	8	19	43	1.80
7209652--7209686	8	4.4	8	88	0	52	62	0	0	37	0.95
7210432--7210475	22	2.0	23	86	4	63	25	4	6	63	1.38
7211047--7211089	13	3.3	13	80	0	50	39	4	2	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7211662--7211706	15	2.8	16	83	10	56	60	6	0	33	1.23
7216969--7217225	134	1.9	136	84	7	349	29	17	16	36	1.92
7250739--7250978	121	2.0	121	81	1	284	40	14	10	35	1.81
7257685--7257944	132	2.0	132	90	0	412	28	18	15	37	1.91
7264346--7264386	21	1.9	22	85	5	57	46	24	9	19	1.80
7266357--7266395	15	2.6	15	91	0	60	35	2	0	61	1.10
7266357--7266395	8	5.1	8	81	12	55	35	2	0	61	1.10
7266657--7266727	24	3.0	24	76	15	76	38	2	2	56	1.29
7266874--7266917	17	2.6	18	85	7	56	43	0	4	52	1.22
7266947--7266985	20	2.0	20	84	0	51	53	2	2	41	1.28
7274996--7275034	21	1.9	21	84	5	53	58	2	0	38	1.12
7274989--7275051	28	2.2	28	86	5	83	65	1	0	33	1.03
7275260--7275301	14	3.1	14	90	10	61	42	0	0	57	0.99
7275369--7275417	22	2.3	21	76	16	57	59	0	0	40	0.98
7277526--7277564	19	2.1	19	85	0	51	41	10	2	46	1.51
7279496--7279545	25	2.0	25	88	0	73	54	0	0	46	1.00
7280762--7280816	27	2.0	27	83	13	69	36	9	9	45	1.68
7281296--7281323	2	14.0	2	100	0	56	0	50	0	50	1.00
7286323--7286356	2	16.0	2	88	11	50	5	47	0	47	1.26
7287169--7287527	178	2.0	177	96	0	655	40	11	29	17	1.86
7289986--7290038	27	2.0	27	85	3	72	58	0	0	41	0.98
7290159--7290217	19	3.1	18	79	16	57	32	3	1	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7297689--7297721	16	2.1	16	94	0	57	45	18	6	30	1.73
7299169--7299248	42	1.9	42	92	0	133	28	17	10	43	1.81
7304392--7304436	18	2.5	19	79	17	51	33	4	0	62	1.15
7304614--7304664	25	2.0	25	81	7	59	31	5	3	58	1.40
7304876--7304966	30	3.0	30	69	26	73	49	1	1	48	1.15
7305084--7305137	9	6.2	9	75	12	51	46	0	0	53	1.00
7305046--7305130	16	5.5	15	74	17	68	50	2	0	47	1.14
7305093--7305150	26	2.3	25	90	3	89	48	0	0	51	1.00
7307319--7307373	26	2.1	26	83	6	67	50	5	9	34	1.57
7312613--7312679	27	2.5	25	74	11	62	26	16	7	49	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100