genome.fa.s113.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  23  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6566200--6566248	9	5.2	9	79	16	55	75	2	0	22	0.90
6566200--6566249	12	4.0	13	75	14	52	74	2	0	24	0.93
6568524--6568730	67	3.2	66	72	10	183	48	8	9	32	1.66
6568857--6568991	63	2.1	64	80	10	152	45	8	8	37	1.65
6568970--6569000	16	1.9	16	93	0	53	61	3	0	35	1.12
6576162--6576203	22	1.9	22	85	0	57	54	0	0	45	0.99
6576312--6576343	7	4.6	7	100	0	64	37	0	0	62	0.95
6576599--6576635	3	12.3	3	100	0	74	32	0	0	67	0.91
6580014--6580058	2	23.0	2	86	4	65	46	2	0	51	1.13
6592486--6592520	17	2.1	17	88	0	52	62	0	2	34	1.10
6592465--6592521	27	2.2	26	83	3	69	57	3	3	35	1.33
6598654--6598718	32	2.2	31	84	13	84	26	4	20	49	1.68
6598714--6598816	45	2.3	45	91	1	161	27	5	18	48	1.71
6598857--6598948	48	1.9	48	93	0	157	35	4	11	47	1.60
6603470--6603497	14	2.0	14	100	0	56	42	21	7	28	1.79
6605321--6605352	2	16.0	2	100	0	64	50	0	0	50	1.00
6610417--6610447	14	2.2	14	94	0	53	74	6	16	3	1.16
6612273--6612429	80	2.0	76	93	4	269	57	7	12	22	1.59
6613238--6613388	75	2.0	75	97	0	284	32	20	16	30	1.95
6615919--6615987	24	2.9	25	73	14	65	62	0	0	37	0.96
6615938--6615988	22	2.4	22	87	6	70	60	0	0	39	0.97
6615952--6615996	18	2.3	21	85	11	60	62	0	2	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6616398--6616436	2	20.5	2	84	10	55	48	0	0	51	1.00
6618080--6618119	2	21.5	2	85	14	59	47	0	0	52	1.00
6621038--6621109	24	3.0	24	80	10	76	33	2	2	61	1.25
6632932--6632961	14	2.1	14	93	0	51	13	0	3	83	0.77
6652161--6652225	28	2.3	28	76	5	69	55	0	0	44	0.99
6652720--6652778	23	2.5	24	81	13	70	44	1	0	54	1.10
6653307--6653466	82	2.0	82	82	2	196	24	21	17	36	1.94
6663265--6663334	31	2.3	30	80	9	79	47	2	0	50	1.16
6671985--6672014	15	2.0	15	93	0	51	46	23	6	23	1.75
6701087--6701121	17	2.1	17	88	0	52	31	5	28	34	1.81
6706989--6707032	22	2.0	22	95	0	79	31	11	13	43	1.80
6709400--6709424	10	2.5	10	100	0	50	8	40	0	52	1.31
6717160--6717188	14	2.0	15	93	6	51	51	0	6	41	1.28
6726012--6726084	28	2.6	29	79	16	84	35	0	4	60	1.16
6733408--6733987	290	2.0	290	95	0	1045	37	20	13	29	1.91
6735602--6735642	7	5.9	7	91	0	55	56	12	0	31	1.36
6735601--6735650	21	2.4	20	77	9	55	54	12	0	34	1.38
6735603--6735650	14	3.4	14	80	5	53	54	12	0	33	1.38
6737041--6737080	21	2.0	20	85	5	53	45	5	7	42	1.54
6737008--6737139	63	2.1	63	81	5	151	43	4	6	46	1.49
6737066--6737168	42	2.4	44	80	9	124	42	3	6	46	1.48
6737052--6737167	21	5.5	21	69	11	76	43	3	7	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6737066--6737212	42	3.4	43	76	9	120	44	4	6	44	1.51
6737139--6737244	21	5.0	21	75	7	79	44	7	7	40	1.61
6737322--6737376	21	2.6	21	76	0	56	47	9	1	41	1.46
6737554--6737596	20	2.2	20	87	8	61	51	4	9	34	1.55
6737830--6737873	20	2.3	19	92	4	70	47	4	15	31	1.66
6738035--6738069	15	2.3	15	90	9	54	17	2	8	71	1.23
6738258--6738318	22	2.8	21	73	9	59	37	3	4	54	1.39
6738738--6738832	21	4.5	21	71	15	79	50	6	6	36	1.53
6738863--6738951	46	1.9	47	88	2	135	44	6	11	37	1.67
6739159--6739223	11	6.1	11	79	13	73	49	7	3	40	1.47
6739029--6739259	21	11.4	21	67	11	97	48	9	3	38	1.50
6739312--6739414	21	5.0	21	76	8	97	57	2	2	36	1.29
6739342--6739379	11	3.8	10	80	13	51	63	2	0	34	1.09
6739312--6739464	20	7.6	20	73	7	121	53	3	4	37	1.40
6739341--6739409	10	7.0	9	75	14	57	56	2	2	37	1.29
6757796--6757860	34	1.9	34	90	0	103	29	15	20	35	1.93
6758120--6758161	22	1.9	22	90	0	66	45	9	11	33	1.73
6761546--6761608	25	2.7	23	90	5	90	39	19	25	15	1.91
6761820--6761861	22	1.9	22	90	0	66	45	9	11	33	1.73
6765104--6765198	47	2.0	47	100	0	190	27	8	12	51	1.68
6769042--6769072	2	15.5	2	100	0	62	51	0	0	48	1.00
6771245--6771270	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6771455--6771533	28	2.6	30	84	9	99	46	2	1	49	1.23
6785643--6785686	23	1.9	23	100	0	88	34	18	13	34	1.90
6792374--6792426	25	2.1	25	93	6	90	16	15	11	56	1.67
6800750--6800789	21	2.0	20	85	5	53	50	0	5	45	1.23
6800770--6800822	24	2.2	24	80	6	63	52	1	1	43	1.23
6801721--6801749	12	2.5	12	94	5	51	62	17	0	20	1.33
6802586--6802625	21	1.9	21	89	0	62	50	0	2	47	1.14
6803267--6803302	17	2.1	17	89	0	54	83	11	5	0	0.80
6803787--6803814	3	9.3	3	100	0	56	64	0	0	35	0.94
6809629--6809683	29	1.9	29	85	10	78	74	0	7	18	1.04
6811905--6811943	17	2.5	15	87	8	51	66	2	2	28	1.18
6818008--6818037	8	3.8	8	100	0	60	0	23	10	66	1.21
6817997--6818048	16	2.9	19	72	21	58	0	19	7	73	1.07
6817997--6818048	27	1.9	27	85	14	72	0	19	7	73	1.07
6819700--6819734	18	2.0	18	94	5	63	57	0	0	42	0.99
6823680--6823706	2	13.5	2	100	0	54	48	0	0	51	1.00
6823922--6823987	21	3.2	20	70	23	55	54	7	3	34	1.44
6823972--6824038	21	3.3	19	78	12	71	50	11	1	35	1.48
6824073--6824128	21	2.7	21	77	5	60	51	5	5	37	1.47
6824363--6824395	16	2.1	17	88	11	52	57	6	0	36	1.23
6824386--6824440	21	2.6	20	75	11	56	58	5	0	36	1.21
6824416--6824479	27	2.3	27	84	10	85	59	1	1	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6824416--6824476	28	2.2	28	85	8	81	59	1	1	37	1.17
6824881--6824919	18	2.1	19	85	4	53	41	0	0	58	0.98
6825023--6825063	18	2.3	17	84	12	55	34	9	0	56	1.32
6826363--6826397	17	2.1	17	89	5	54	22	5	0	71	1.07
6838261--6838317	30	1.9	30	96	0	105	40	17	8	33	1.81
6842762--6842805	20	2.2	18	84	15	52	27	6	13	52	1.66
6844016--6844055	13	3.2	13	82	3	55	47	0	0	52	1.00
6844013--6844080	33	2.1	33	86	5	93	44	0	1	54	1.09
6844016--6844065	23	2.1	25	88	7	77	48	0	0	52	1.00
6844004--6844075	10	7.0	10	75	18	51	41	0	1	56	1.07
6845539--6845590	23	2.3	23	83	6	61	28	9	1	59	1.40
6846480--6846514	3	11.7	3	87	0	52	34	5	0	60	1.21
6846885--6846915	16	2.0	16	93	6	55	58	6	0	35	1.24
6850367--6850406	6	6.7	6	97	0	71	17	37	32	12	1.87
6853122--6853172	24	2.1	24	92	0	84	29	3	19	47	1.68
6881776--6881835	30	2.0	30	100	0	102	23	16	16	43	1.87
6889277--6889317	19	2.2	19	86	0	55	2	14	0	82	0.76
6894343--6894382	18	2.0	20	86	13	57	42	5	0	52	1.23
6895465--6895574	30	3.7	29	77	12	91	34	7	5	52	1.52
6895532--6895592	30	2.0	30	83	0	77	36	11	6	45	1.66
6895628--6895703	29	2.6	29	78	4	89	63	1	5	30	1.25
6898181--6898211	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6899295--6899319	2	12.5	2	100	0	50	52	0	48	0	1.00
6902566--6902598	16	2.1	16	94	0	57	0	15	0	84	0.61
6902568--6902598	10	3.0	10	95	4	53	0	12	0	87	0.55
6907523--6907607	42	2.0	42	90	0	134	50	9	16	23	1.74
6909117--6909839	359	2.0	359	98	0	1412	36	18	13	30	1.90
6911147--6911183	2	19.5	2	83	10	51	45	0	0	54	1.00
6916661--6916691	2	15.5	2	100	0	62	48	0	0	51	1.00
6919695--6919753	24	2.4	24	86	11	75	52	5	0	42	1.23
6922594--6922625	15	2.1	16	88	11	50	53	0	0	46	1.00
6923442--6923491	21	2.5	19	79	20	57	20	0	12	68	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100