genome.fa.s113.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  95  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18810580--18810657	17	4.5	17	74	4	66	37	7	11	43	1.70
18810580--18810664	18	4.8	18	76	5	75	36	9	10	43	1.72
18810534--18810703	52	3.2	53	75	5	150	36	8	14	41	1.75
18810580--18810664	35	2.4	35	74	0	89	36	9	10	43	1.72
18810831--18810929	23	4.5	22	72	16	80	43	10	8	38	1.68
18810829--18810982	22	6.9	22	73	14	109	42	10	8	38	1.70
18810818--18810983	44	3.7	45	75	10	144	40	10	9	39	1.72
18810842--18811153	46	6.9	44	73	8	182	39	12	9	39	1.75
18810995--18811153	22	7.0	22	66	9	86	37	15	8	38	1.77
18810893--18811153	91	2.9	91	77	4	233	39	12	9	38	1.75
18811087--18811172	45	1.9	45	83	4	111	38	11	6	43	1.68
18818354--18818387	17	1.9	17	88	5	50	26	2	2	67	1.19
18819459--18819507	24	2.0	24	92	0	80	32	8	22	36	1.84
18820530--18820990	230	2.0	230	96	0	843	25	14	23	35	1.94
18823007--18823042	6	6.0	6	96	0	63	16	47	16	19	1.83
18823585--18823629	2	22.5	2	90	0	72	44	0	4	51	1.21
18826125--18826315	102	1.9	101	92	1	285	36	15	15	32	1.90
18827435--18828386	161	5.9	159	79	6	692	43	13	9	34	1.76
18827601--18828368	318	2.4	320	85	2	1030	43	12	9	34	1.76
18827601--18828367	161	4.8	159	83	4	918	43	12	9	34	1.75
18829953--18830075	63	2.0	63	83	6	160	29	15	16	39	1.89
18829990--18830450	188	2.5	188	79	5	504	33	15	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18831875--18831930	25	2.3	24	85	14	71	28	0	8	62	1.25
18832347--18832399	22	2.4	22	83	0	70	28	11	26	33	1.91
18832391--18832441	22	2.3	22	82	0	66	37	17	13	31	1.89
18835985--18836131	51	2.9	51	84	3	179	36	6	19	37	1.79
18836419--18836468	21	2.4	21	79	0	55	24	6	14	56	1.60
18836747--18836771	11	2.3	11	100	0	50	92	8	0	0	0.40
18840860--18840951	10	8.5	11	74	12	57	79	2	13	5	1.00
18841665--18842281	115	5.4	114	74	5	382	21	21	11	44	1.84
18842428--18842573	35	4.2	34	73	12	120	36	16	13	33	1.88
18842443--18842619	69	2.6	69	80	1	203	33	16	14	35	1.89
18842599--18842641	17	2.6	17	77	3	52	39	16	9	34	1.80
18843129--18843277	51	2.9	51	81	3	174	36	6	19	37	1.78
18844568--18844635	31	2.2	31	86	5	93	14	8	20	55	1.65
18845056--18845088	12	2.9	12	86	13	52	69	0	0	30	0.88
18848666--18848736	34	2.1	34	97	0	133	40	7	8	43	1.62
18849187--18849240	9	5.7	9	78	8	54	81	3	14	0	0.82
18849595--18849649	19	2.9	19	84	10	76	70	1	20	7	1.20
18849641--18849701	22	2.8	22	85	2	79	80	0	13	6	0.90
18849645--18849700	8	7.6	8	82	15	59	80	0	12	7	0.90
18849666--18849715	10	4.6	11	82	9	50	80	0	18	2	0.82
18849641--18849721	43	1.9	42	82	12	103	79	0	16	4	0.91
18850754--18850828	21	3.5	22	80	7	93	34	8	17	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18850980--18851071	22	4.2	22	74	13	64	31	7	16	44	1.75
18850923--18851071	64	2.3	67	80	5	153	33	8	16	41	1.78
18851555--18852065	43	11.8	44	80	7	478	25	12	18	43	1.85
18851555--18852040	261	1.9	258	84	5	667	24	12	18	44	1.85
18853398--18853474	25	3.0	25	70	10	75	36	9	18	36	1.82
18853404--18853485	25	3.3	24	69	15	67	36	9	14	39	1.79
18855365--18855503	61	2.3	61	87	2	199	34	11	20	33	1.89
18857937--18857966	10	3.0	10	95	0	51	43	0	6	50	1.28
18858154--18858252	48	2.1	48	100	0	198	39	27	8	25	1.84
18868026--18868071	23	2.0	23	87	8	67	30	8	10	50	1.68
18868681--18868738	29	2.0	29	82	3	71	29	6	5	58	1.46
18868758--18868796	18	2.2	18	86	9	53	23	7	2	66	1.30
18872814--18872854	16	2.5	16	88	4	55	82	2	12	2	0.86
18874282--18874409	63	2.0	63	89	3	195	29	25	9	35	1.87
18874282--18874478	63	3.1	62	81	3	189	26	23	10	39	1.87
18874476--18874544	32	2.2	32	82	15	81	20	27	5	46	1.73
18874568--18874646	33	2.4	33	93	4	133	26	20	11	41	1.86
18874628--18874737	32	3.4	33	76	7	91	28	18	11	41	1.85
18874585--18874737	33	4.7	32	78	8	114	26	18	11	43	1.84
18874633--18874754	65	1.9	65	82	0	154	27	18	12	42	1.85
18874751--18874818	32	2.1	32	86	5	93	27	16	13	42	1.85
18875128--18875169	13	3.1	14	76	16	52	23	7	0	69	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18875123--18875182	26	2.3	27	86	11	81	20	8	1	70	1.22
18875794--18875832	20	2.0	20	94	0	69	43	30	2	23	1.67
18877163--18877274	58	1.9	59	83	8	149	56	4	0	38	1.26
18877589--18877632	21	2.0	22	86	4	63	54	2	0	43	1.12
18879935--18880291	161	2.2	160	80	8	393	42	14	9	33	1.78
18886332--18886493	62	2.6	62	74	13	154	35	12	10	40	1.78
18887758--18887826	28	2.5	28	85	0	93	26	5	23	44	1.75
18889484--18889534	4	12.2	4	78	14	50	23	0	5	70	1.09
18889467--18889523	18	2.9	21	76	23	61	26	0	5	68	1.11
18889491--18889524	13	2.6	13	90	0	59	26	0	2	70	1.01
18889483--18889524	22	2.0	20	90	9	66	26	0	2	71	0.98
18893958--18894012	3	18.3	3	80	0	56	29	27	5	38	1.79
18893999--18894058	6	10.0	6	78	7	50	35	5	0	60	1.19
18894382--18894439	16	3.7	15	78	17	64	43	0	5	51	1.24
18895965--18896005	16	2.6	16	85	14	50	63	2	2	31	1.20
18904495--18904672	50	3.6	50	76	9	159	31	9	14	44	1.77
18907261--18907311	10	5.6	10	80	15	58	70	0	0	29	0.87
18907247--18907306	26	2.1	27	85	11	77	70	0	1	28	0.97
18907261--18907311	16	2.8	19	74	20	63	70	0	0	29	0.87
18909709--18909738	11	2.7	11	94	0	51	30	0	0	70	0.88
18913376--18913418	9	4.8	9	76	0	50	16	2	0	81	0.79
18913377--18913421	18	2.6	18	89	3	65	17	2	0	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18913394--18913433	17	2.4	17	86	0	53	22	2	0	75	0.93
18919530--18919554	2	12.5	2	100	0	50	52	0	0	48	1.00
18927948--18929187	160	7.7	161	78	6	939	33	10	13	42	1.78
18927995--18929187	322	3.7	320	80	3	1143	33	9	14	43	1.78
18930478--18930562	41	2.1	41	88	0	125	34	21	15	29	1.94
18945313--18945396	32	2.5	32	86	5	105	7	21	2	69	1.25
18946745--18946784	14	2.7	15	84	11	55	0	17	0	82	0.67
18946700--18946798	19	5.3	18	67	24	53	3	18	2	76	1.01
18946745--18946789	15	3.1	14	84	9	54	0	15	0	84	0.62
18946739--18946798	12	5.1	11	84	11	75	0	20	0	80	0.72
18961108--18961205	48	2.0	49	88	3	146	42	8	1	47	1.39
18969227--18969290	6	10.7	6	72	24	55	62	0	0	37	0.95
18969233--18969296	12	5.3	12	88	0	92	62	0	0	37	0.95
18969233--18969305	24	3.0	24	85	0	101	63	0	0	36	0.95
18969233--18969305	36	2.0	36	84	5	94	63	0	0	36	0.95
18970024--18970068	22	2.0	22	82	0	54	60	2	0	37	1.09
18971613--18971647	3	11.7	3	100	0	70	65	0	0	34	0.93
18973723--18973782	2	30.0	2	100	0	120	50	0	0	50	1.00
18979711--18979812	39	2.6	39	87	3	143	23	4	37	34	1.76
18983563--18983730	89	1.9	84	88	5	246	34	16	15	33	1.90
18983745--18983771	4	6.8	4	100	0	54	22	0	0	77	0.76
18989873--18990018	20	7.4	20	68	19	65	23	13	13	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18989956--18990035	40	2.0	41	80	7	92	25	12	13	48	1.77
18989944--18990088	60	2.6	58	79	9	140	27	11	11	50	1.71
18989984--18990091	18	5.7	19	72	14	82	26	11	10	51	1.69
18990219--18990273	20	2.8	20	78	13	60	30	5	9	54	1.54
18990926--18990952	2	13.5	2	100	0	54	51	0	0	48	1.00
18991070--18991104	6	5.8	6	93	0	61	51	2	17	28	1.59
18992894--18992945	27	1.9	26	81	14	61	63	0	11	25	1.28
19018202--19018423	59	3.7	60	85	7	308	33	13	6	45	1.70
19018207--19018425	122	1.8	121	91	3	368	33	13	6	46	1.69
19018550--19018588	10	4.0	10	83	6	53	79	0	5	15	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100