genome.fa.s113.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  58  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13550226--13550267	21	2.0	22	85	4	59	71	0	4	23	1.05
13550255--13550303	19	2.6	19	80	3	64	79	2	4	14	0.97
13550253--13550295	13	3.8	11	82	14	52	79	2	2	16	0.95
13552226--13552315	16	5.6	16	74	10	76	20	3	28	47	1.65
13552226--13552326	33	3.1	32	79	13	116	19	2	28	48	1.64
13552695--13552758	31	2.1	31	82	8	78	78	4	1	15	1.00
13552699--13552723	8	3.1	8	100	0	50	76	12	0	12	1.04
13552803--13552901	38	2.6	38	77	3	101	16	25	36	22	1.94
13553438--13553472	6	5.8	6	89	0	52	2	0	14	82	0.77
13553679--13553720	21	2.0	21	90	9	68	4	4	57	33	1.41
13554007--13554382	48	7.8	47	81	11	415	35	24	13	26	1.92
13554007--13554388	95	4.0	97	89	5	528	35	24	12	27	1.92
13554007--13554382	143	2.6	144	85	6	471	35	24	13	26	1.92
13559775--13560129	176	2.0	176	97	0	665	34	20	14	30	1.92
13566660--13566754	16	5.9	15	71	9	64	20	3	31	45	1.66
13566665--13566755	32	2.8	32	85	5	112	18	2	30	48	1.60
13568169--13568220	9	5.9	9	90	4	88	0	0	19	80	0.71
13572801--13572827	9	3.0	9	100	0	54	44	33	11	11	1.75
13579607--13579792	100	1.9	100	85	2	257	35	11	16	36	1.86
13592750--13592786	9	4.1	9	89	0	56	78	0	10	10	0.97
13601831--13601880	19	2.6	19	83	3	64	30	34	12	24	1.91
13603948--13603999	9	5.8	9	76	0	50	26	3	19	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13603952--13603999	18	2.7	18	80	0	60	29	4	18	47	1.67
13610123--13610173	25	2.0	25	92	0	84	21	9	19	49	1.77
13614844--13614991	39	3.7	39	81	5	181	50	10	15	23	1.76
13615110--13615178	33	2.1	33	89	5	104	20	8	21	49	1.76
13615523--13615550	11	2.5	11	100	0	56	0	7	0	92	0.37
13616999--13617034	17	2.1	18	89	5	56	36	0	0	63	0.94
13618115--13618206	47	2.0	47	91	2	150	60	7	4	27	1.43
13619903--13619953	24	2.1	25	88	3	77	47	1	0	50	1.12
13619990--13620035	22	2.1	22	87	0	65	63	8	0	28	1.24
13622769--13622804	2	18.0	2	94	0	63	52	0	0	47	1.00
13623139--13623166	3	9.3	3	100	0	56	32	0	0	67	0.91
13630979--13631008	5	6.0	5	92	0	51	80	16	0	3	0.85
13633876--13633948	33	2.2	34	82	7	87	50	2	2	43	1.30
13633931--13633955	12	2.1	12	100	0	50	52	0	0	48	1.00
13635634--13635678	23	1.9	24	82	13	58	26	4	22	46	1.70
13640285--13640313	3	9.7	3	100	0	58	34	0	0	65	0.93
13646234--13646293	30	2.0	30	96	0	111	38	6	5	50	1.51
13647577--13647632	22	2.5	22	85	5	69	50	1	1	46	1.22
13647577--13647641	22	2.9	21	84	11	67	49	1	1	47	1.20
13647819--13647853	18	2.0	17	88	5	52	62	0	2	34	1.10
13650469--13650499	16	2.0	15	93	6	53	32	0	0	67	0.91
13650471--13650508	16	2.4	16	86	8	51	34	2	0	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13651422--13651474	5	11.0	5	77	22	60	81	16	1	0	0.79
13651430--13651495	8	8.1	8	72	8	53	81	13	3	1	0.87
13651422--13651495	17	4.4	17	73	13	64	81	14	2	1	0.88
13651425--13651471	25	2.0	23	88	12	69	82	14	2	0	0.75
13652462--13652514	27	2.0	25	89	7	79	32	41	20	5	1.76
13652591--13652628	3	12.7	3	88	0	58	26	0	5	68	1.11
13653002--13653063	33	1.9	32	83	9	81	50	27	3	19	1.63
13665073--13665383	45	6.7	47	90	7	485	27	10	27	35	1.89
13665063--13665499	45	9.9	46	85	11	484	27	10	27	34	1.90
13665347--13665451	34	3.1	34	98	0	201	26	8	32	32	1.87
13665670--13665719	5	10.4	5	81	16	52	86	12	2	0	0.67
13665667--13665719	19	2.8	19	88	0	79	86	11	1	0	0.64
13665667--13665739	28	2.7	27	81	8	85	84	10	2	1	0.78
13665667--13665739	14	5.3	14	77	9	71	84	10	2	1	0.78
13666633--13666709	39	2.1	36	85	7	100	23	44	23	9	1.82
13667199--13667256	16	3.6	16	79	9	64	46	27	6	18	1.75
13667385--13667667	141	2.0	142	97	0	532	39	12	15	32	1.85
13669780--13669808	2	14.5	2	100	0	58	51	0	0	48	1.00
13670472--13670583	59	1.9	59	85	3	154	27	7	5	59	1.45
13671690--13671754	32	2.0	32	84	0	85	18	3	32	46	1.65
13671703--13671754	16	3.2	16	80	0	59	17	1	32	48	1.58
13673195--13673259	31	2.1	32	82	8	80	7	1	10	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13673205--13673265	24	2.6	24	82	7	63	8	1	11	78	1.02
13673506--13676799	73	46.2	72	81	8	2883	41	13	24	20	1.88
13673515--13676775	69	45.8	69	82	6	2726	41	13	24	20	1.88
13673603--13673714	35	3.2	35	67	14	88	43	13	23	19	1.86
13674207--13674320	33	3.4	32	73	10	111	40	12	24	22	1.88
13673530--13676775	490	6.5	490	84	6	3368	41	13	24	20	1.88
13673718--13676775	35	85.7	36	65	16	724	41	13	24	20	1.88
13675654--13675689	16	2.2	16	95	0	63	38	0	27	33	1.57
13675579--13675762	89	2.1	89	89	3	289	42	8	25	23	1.82
13675506--13675835	163	2.0	162	90	3	511	43	10	24	22	1.84
13675683--13676762	355	3.0	355	90	3	1596	41	12	24	21	1.87
13676838--13676907	36	1.9	36	83	11	90	41	15	17	25	1.89
13676754--13676921	87	1.9	87	92	2	284	36	17	20	25	1.94
13676823--13677059	109	2.2	109	92	0	393	37	18	19	24	1.94
13677023--13677081	23	2.6	23	86	2	75	27	18	27	27	1.98
13676909--13677192	132	2.2	132	88	0	435	35	19	20	24	1.96
13677155--13677226	22	3.4	22	77	14	78	33	20	19	26	1.97
13679238--13679266	10	3.0	10	95	5	51	0	0	6	93	0.36
13684751--13684804	27	2.0	27	89	3	83	7	0	11	81	0.87
13684753--13684810	27	2.1	27	84	6	73	8	1	10	79	1.01
13686100--13686128	14	2.1	14	100	0	58	51	0	6	41	1.28
13690298--13690336	20	2.0	20	100	0	78	48	5	15	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13697752--13697790	21	1.9	20	89	5	60	51	2	17	28	1.59
13701669--13701757	39	2.3	40	78	16	98	71	0	17	10	1.12
13701658--13701757	40	2.6	39	78	10	107	70	0	19	11	1.17
13702278--13702313	17	2.0	19	89	10	58	47	11	11	30	1.74
13703733--13703762	10	3.0	10	95	0	51	40	23	10	26	1.86
13709692--13709722	15	2.1	15	93	0	53	25	6	25	41	1.79
13712596--13712627	2	16.0	2	93	0	55	46	0	3	50	1.17
13713323--13713352	14	2.1	15	93	6	53	60	0	0	40	0.97
13715357--13716001	322	2.0	321	91	1	1042	32	23	14	29	1.94
13717309--13717338	14	2.2	13	94	5	51	66	16	0	16	1.25
13717888--13717962	30	2.4	32	74	14	75	13	6	6	73	1.24
13718241--13718603	182	2.0	184	90	5	572	39	4	10	45	1.61
13720805--13720861	24	2.3	26	79	11	66	15	8	26	49	1.74
13721129--13721201	5	13.8	5	72	16	58	23	2	0	73	0.95
13721126--13721201	38	2.0	38	84	5	100	23	2	0	73	0.95
13721129--13721202	33	2.3	32	86	9	98	22	2	0	74	0.95
13728167--13728242	32	2.4	32	79	10	77	28	10	11	48	1.73
13728200--13728242	16	2.6	17	78	10	54	30	9	11	48	1.71
13728230--13728354	20	6.3	20	73	6	103	30	8	11	50	1.67
13728374--13728502	53	2.4	53	88	0	195	28	5	9	56	1.53
13728443--13728544	41	2.5	41	85	7	136	29	5	11	52	1.61
13728608--13728669	24	2.6	24	87	7	90	32	3	11	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13728601--13728639	19	2.1	19	90	0	60	28	5	12	53	1.60
13728771--13728828	20	2.9	20	75	10	64	36	5	12	46	1.63
13730235--13730594	131	2.8	131	75	7	340	26	10	13	50	1.73
13731790--13731895	8	12.4	8	73	23	65	80	0	15	3	0.91
13731801--13731895	7	13.4	7	77	16	81	78	1	15	4	0.95
13731792--13731897	19	6.1	17	69	24	78	79	0	16	3	0.93
13731790--13731893	35	3.0	34	79	10	120	79	0	15	3	0.92
13731791--13731895	24	4.4	23	71	17	90	80	0	15	3	0.91
13733367--13733413	21	2.2	22	88	3	69	36	8	10	44	1.70
13733583--13733653	18	3.9	18	81	0	88	19	12	25	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100