genome.fa.s113.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  96  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19019402--19019441	14	2.7	15	92	3	64	75	10	5	10	1.19
19019548--19019701	6	26.0	6	76	13	88	75	0	3	20	0.99
19019549--19019703	36	4.4	36	70	16	110	74	0	3	21	0.99
19019548--19019679	30	4.2	31	74	14	119	74	0	1	23	0.95
19019599--19019699	25	4.0	24	71	13	71	77	0	3	18	0.93
19019851--19019885	9	4.0	9	88	7	54	0	0	11	88	0.51
19019851--19019884	11	3.3	11	92	8	54	0	0	8	91	0.43
19019892--19020301	81	5.1	82	87	4	584	37	21	16	24	1.94
19019892--19020301	41	10.1	41	86	3	582	37	21	16	24	1.94
19021271--19021339	8	8.8	8	73	20	65	11	14	0	73	1.09
19021260--19021340	40	2.1	38	88	6	119	11	16	0	72	1.11
19021269--19021325	10	5.7	10	82	12	64	10	15	0	73	1.09
19021276--19021356	38	2.0	40	81	9	94	16	14	3	65	1.41
19028553--19028594	15	2.8	16	85	7	52	52	4	21	21	1.65
19031737--19032188	58	7.7	58	84	5	577	36	12	5	45	1.66
19032200--19032297	17	5.6	17	70	20	53	72	2	11	14	1.21
19032254--19032306	21	2.5	21	82	11	56	75	1	5	16	1.08
19032330--19032371	4	11.0	4	80	19	54	78	0	0	21	0.75
19032328--19032370	13	3.2	13	90	3	68	81	0	0	18	0.69
19032315--19032363	10	5.0	10	78	14	57	77	0	4	18	0.92
19033351--19033471	47	2.5	45	81	11	118	72	1	1	23	1.02
19033404--19033472	6	11.2	6	77	14	70	76	1	0	21	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19033404--19033472	31	2.2	30	92	7	120	76	1	0	21	0.86
19037720--19037765	25	1.9	25	86	8	69	73	8	4	13	1.21
19037803--19037843	16	2.5	17	76	11	50	80	0	0	19	0.71
19046789--19046893	29	3.6	28	78	10	95	37	1	3	57	1.28
19046917--19046975	31	1.9	31	89	6	93	49	0	1	49	1.11
19046917--19047018	54	1.9	54	88	6	154	48	0	2	49	1.16
19047039--19047070	9	3.4	9	95	4	55	40	3	0	56	1.15
19047034--19047079	19	2.5	18	82	3	65	43	2	0	54	1.12
19047309--19047414	30	3.6	29	80	8	124	40	0	0	57	1.11
19047295--19047417	59	2.1	58	85	7	160	35	0	1	61	1.11
19047391--19047438	17	2.5	19	77	22	55	45	0	2	52	1.12
19047537--19047590	24	2.2	25	77	9	67	55	0	0	44	0.99
19048616--19048677	31	1.9	33	84	12	85	38	3	1	56	1.25
19049022--19049070	25	2.0	25	91	0	80	34	6	14	44	1.70
19056481--19056513	2	16.5	2	100	0	66	48	0	0	51	1.00
19066708--19066876	80	2.1	80	83	6	209	44	23	8	23	1.80
19067733--19067995	124	2.1	123	79	9	277	39	7	15	36	1.76
19086077--19086120	22	2.0	22	90	0	70	25	15	38	20	1.92
19092501--19093139	318	2.0	319	88	4	964	41	8	10	39	1.71
19094588--19094629	21	2.0	21	85	0	57	59	0	11	28	1.33
19094975--19095021	22	2.1	22	84	7	60	51	10	8	29	1.66
19095104--19095157	20	2.8	20	82	2	65	46	12	9	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19095218--19095305	18	4.9	18	73	8	72	52	14	11	21	1.73
19095247--19095409	74	2.2	72	81	5	177	52	11	7	28	1.65
19095363--19095544	18	9.8	18	76	10	143	49	10	9	29	1.70
19095356--19095574	8	25.1	8	65	18	64	50	10	9	29	1.67
19095219--19095463	128	1.9	128	80	5	280	51	10	9	28	1.67
19095450--19095540	35	2.6	34	79	6	94	48	14	10	26	1.77
19095481--19095574	27	3.5	26	78	11	93	53	10	7	28	1.62
19095484--19095574	35	2.6	35	82	3	103	52	10	6	29	1.62
19095490--19095579	18	5.1	18	77	5	76	54	11	7	26	1.62
19095484--19095601	35	3.4	35	74	9	98	52	11	5	30	1.60
19095723--19095942	116	1.9	113	82	7	273	43	11	6	37	1.68
19095848--19095920	24	3.1	24	66	9	60	47	10	8	32	1.68
19095856--19096002	23	6.5	22	69	15	79	44	11	8	36	1.71
19095883--19096239	21	16.2	21	67	12	137	44	14	6	34	1.71
19095917--19096239	44	7.3	44	75	4	249	45	14	6	34	1.70
19095933--19096234	88	3.4	89	79	5	292	45	14	6	33	1.71
19096157--19096238	22	3.7	22	69	15	69	47	13	4	34	1.64
19096738--19096905	70	2.4	70	79	4	194	42	14	12	30	1.82
19101492--19101621	56	2.2	60	80	10	146	33	6	6	53	1.52
19101576--19101600	13	1.9	13	100	0	50	32	0	4	64	1.12
19104741--19104873	5	27.2	5	73	15	100	37	5	2	54	1.35
19104757--19104912	3	56.3	3	71	20	72	33	3	3	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19104757--19104874	8	13.5	8	74	22	80	37	4	1	56	1.29
19105345--19105386	22	2.0	21	86	9	59	23	2	28	45	1.66
19105740--19105837	5	19.2	5	70	19	53	19	2	2	76	0.98
19105735--19105837	18	5.9	17	75	20	97	18	2	1	76	1.00
19105742--19105847	13	7.8	13	72	23	76	17	1	3	76	1.03
19105742--19105846	25	3.9	25	77	17	104	18	1	3	76	1.03
19105742--19105837	6	15.5	6	77	20	83	18	2	2	77	0.97
19105740--19105837	19	5.6	18	75	20	57	19	2	2	76	0.98
19117840--19118026	3	66.3	3	70	17	116	33	3	3	59	1.31
19117850--19117892	20	2.2	19	91	4	68	27	2	4	65	1.25
19117901--19118018	5	23.2	5	80	10	109	37	3	1	57	1.25
19118863--19118941	5	16.2	5	72	15	51	21	1	1	75	0.94
19118865--19118941	6	12.5	6	74	20	70	20	1	1	76	0.93
19125519--19125821	131	2.4	128	81	7	337	47	10	14	27	1.77
19127234--19127291	26	2.2	26	85	11	75	41	10	5	43	1.61
19128200--19128257	17	3.2	17	79	16	64	72	0	8	18	1.10
19135699--19135729	15	2.1	15	93	0	53	45	0	3	51	1.17
19135795--19135830	14	2.5	15	90	4	56	50	0	0	50	1.00
19135677--19135884	103	2.0	105	85	6	282	44	2	8	44	1.46
19136412--19136467	29	1.9	29	85	0	76	32	8	14	44	1.76
19136500--19136582	29	2.7	32	75	12	100	49	10	4	34	1.59
19136521--19136590	29	2.4	30	88	4	99	50	8	2	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19138003--19138068	14	4.6	14	75	5	60	62	4	1	31	1.25
19138003--19138129	29	4.3	29	70	13	98	55	4	3	36	1.40
19140903--19140988	41	2.1	41	89	4	129	36	16	5	41	1.72
19142765--19142794	9	3.2	9	95	4	51	63	0	0	36	0.95
19142767--19142796	10	3.1	10	95	4	53	63	0	0	36	0.95
19143473--19143535	16	4.2	16	70	15	53	55	1	1	41	1.19
19143457--19143527	28	2.5	27	76	13	63	59	0	1	39	1.06
19143595--19143685	34	2.6	35	86	10	116	63	0	2	34	1.06
19143783--19143847	20	3.6	19	72	19	75	63	1	1	33	1.13
19143774--19143850	35	2.2	35	90	4	120	64	1	2	31	1.15
19143783--19143863	35	2.3	34	83	10	101	62	2	4	29	1.29
19144212--19144237	12	2.2	12	100	0	52	7	50	11	30	1.67
19145206--19145240	2	17.5	2	100	0	70	48	0	0	51	1.00
19148551--19148952	198	2.0	199	99	0	788	24	16	16	42	1.88
19149675--19149760	42	2.0	42	84	4	111	33	11	6	47	1.67
19153574--19153617	22	2.0	22	90	0	70	34	11	11	43	1.77
19171410--19171471	28	2.2	28	97	0	115	33	8	22	35	1.84
19187042--19187070	2	14.5	2	100	0	58	48	0	0	51	1.00
19188817--19188860	23	1.9	23	86	9	63	36	29	2	31	1.70
19189697--19189754	21	2.8	20	82	10	73	53	0	15	31	1.42
19196788--19196813	3	8.7	3	100	0	52	69	0	0	30	0.89
19199813--19199851	7	5.4	7	90	3	60	82	0	5	12	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19204432--19204468	13	3.1	12	88	11	58	16	2	5	75	1.10
19205197--19205247	22	2.3	22	83	10	68	0	21	1	76	0.88
19205195--19205265	30	2.4	29	76	6	70	5	18	1	74	1.08
19210814--19210848	3	11.7	3	100	0	70	68	0	0	31	0.90
19211660--19211718	29	2.1	28	81	9	66	32	0	5	62	1.17
19213608--19213979	208	1.8	208	82	10	478	36	13	5	44	1.68
19215117--19215162	10	4.5	10	83	5	56	84	0	13	2	0.71
19215113--19215151	9	4.0	10	87	12	55	79	0	20	0	0.73
19215363--19215772	100	4.0	99	78	10	326	36	20	11	31	1.89
19215409--19215772	106	3.5	105	81	5	391	35	20	12	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100