genome.fa.s113.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  17  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4785977--4786071	47	2.0	47	93	4	165	27	11	37	23	1.89
4788964--4789021	29	2.0	29	90	6	91	41	10	15	32	1.81
4795797--4795836	12	3.3	12	85	0	53	47	35	5	12	1.63
4798107--4798137	14	2.2	14	94	0	53	0	22	0	77	0.77
4800915--4800984	34	2.1	33	81	7	79	57	1	0	41	1.08
4800931--4800980	23	2.2	22	85	7	64	58	0	0	42	0.98
4804894--4804951	18	2.9	20	75	15	57	32	15	32	18	1.93
4810667--4810719	21	2.4	22	87	6	72	49	0	1	49	1.12
4816241--4816266	13	2.0	13	100	0	52	76	0	0	23	0.78
4824384--4824431	16	2.9	16	81	6	51	33	0	2	64	1.05
4825748--4825780	11	3.1	11	82	8	50	69	3	0	27	1.03
4825896--4825937	22	2.0	21	90	4	66	52	4	4	38	1.44
4825950--4826000	21	2.4	21	80	6	59	52	1	7	37	1.42
4826028--4826164	63	2.2	64	81	9	156	59	4	5	29	1.40
4828700--4828742	21	2.0	21	82	8	52	39	2	4	53	1.34
4844869--4844948	13	6.2	13	72	20	53	48	0	1	50	1.08
4844920--4844997	29	2.5	31	82	10	81	61	0	0	38	0.96
4850184--4850217	18	1.9	18	88	5	52	29	2	20	47	1.65
4873405--4873433	5	5.8	5	100	0	58	20	0	0	79	0.74
4880497--4880540	22	2.0	21	83	12	54	65	2	0	31	1.05
4884401--4884705	152	2.0	153	93	0	522	25	11	24	38	1.89
4893479--4893507	5	5.8	5	100	0	58	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4893843--4893870	2	14.0	2	100	0	56	0	50	0	50	1.00
4904507--4904812	153	2.0	153	93	0	522	25	11	24	38	1.89
4913025--4913058	2	17.0	2	100	0	68	50	0	0	50	1.00
4914022--4914165	24	6.0	24	75	10	114	52	10	4	31	1.56
4914157--4914334	85	2.1	85	88	2	259	52	11	5	30	1.60
4914216--4914278	32	2.1	30	88	11	94	53	9	6	30	1.58
4915515--4915580	13	5.3	12	78	10	62	69	9	3	18	1.28
4915527--4915591	6	10.3	6	76	14	51	67	12	1	18	1.30
4915533--4915610	6	12.7	6	72	10	50	65	10	1	23	1.31
4915533--4915615	13	6.7	12	76	15	80	65	10	1	22	1.31
4915515--4915591	25	3.1	23	76	10	64	67	11	2	18	1.33
4915521--4915615	31	3.1	30	75	6	82	66	10	2	21	1.33
4915566--4915615	24	2.1	24	88	0	73	64	12	0	24	1.27
4916568--4916593	2	13.0	2	100	0	52	50	0	0	50	1.00
4918955--4919021	28	2.3	29	85	7	84	38	4	0	56	1.19
4918995--4919028	16	2.1	16	89	10	52	41	2	0	55	1.15
4920837--4920889	27	2.0	27	85	7	72	43	0	1	54	1.11
4920870--4920912	18	2.5	17	82	14	52	46	0	0	53	1.00
4924009--4924033	2	12.5	2	100	0	50	52	0	0	48	1.00
4934623--4934658	17	2.1	18	89	5	56	44	0	2	52	1.15
4934707--4934803	33	2.9	34	81	13	114	45	0	1	53	1.07
4934693--4934786	33	2.6	36	83	13	122	41	1	2	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4935027--4935056	13	2.3	13	94	0	51	50	0	6	43	1.28
4935055--4935115	28	2.1	30	82	11	74	60	1	4	32	1.28
4937768--4937829	32	1.9	32	96	0	115	32	22	12	32	1.92
4943189--4943220	2	16.0	2	100	0	64	50	0	0	50	1.00
4946507--4946531	2	12.5	2	100	0	50	52	0	0	48	1.00
4947206--4947238	16	2.1	16	94	0	57	57	0	0	42	0.98
4947273--4947324	23	2.4	21	79	14	61	57	11	0	30	1.34
4950576--4950602	13	2.1	13	100	0	54	37	22	33	7	1.82
4955034--4955081	22	2.1	23	92	3	80	41	10	6	41	1.64
4957138--4957179	21	2.0	21	86	9	59	57	7	19	16	1.62
4957884--4957939	26	2.2	25	87	6	85	33	14	3	48	1.61
4957890--4957945	26	2.2	26	96	0	103	33	10	3	51	1.54
4962024--4962183	61	2.7	60	85	5	216	33	10	6	48	1.64
4962129--4962320	72	2.6	74	89	5	291	40	11	4	43	1.62
4962260--4962537	58	4.7	58	77	8	204	37	8	5	48	1.57
4962337--4962506	60	2.8	61	81	11	208	37	10	4	48	1.57
4963402--4963558	3	53.7	3	87	5	214	69	1	1	27	1.07
4963716--4963772	29	2.0	29	83	13	73	7	3	7	82	0.94
4963814--4963962	46	3.3	44	79	4	172	46	18	12	22	1.81
4963811--4964004	86	2.2	88	82	7	232	46	17	11	24	1.81
4963834--4964023	42	4.4	42	71	11	143	42	19	13	24	1.87
4963997--4964217	42	5.2	42	81	9	229	42	17	13	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4964847--4964902	22	2.5	22	88	5	78	42	16	5	35	1.70
4966428--4966457	9	3.2	9	95	4	51	10	3	0	86	0.67
4966103--4966798	351	2.0	351	94	0	1214	33	18	10	37	1.86
4969715--4969751	19	1.9	19	94	0	65	48	18	10	21	1.78
4970488--4970761	60	4.7	56	82	8	280	36	11	4	47	1.58
4970871--4970912	4	10.5	4	100	0	84	76	0	0	23	0.79
4971679--4971783	17	6.4	16	71	22	76	71	1	3	22	1.12
4971699--4971781	14	6.2	13	70	22	57	73	1	3	21	1.05
4971668--4971777	15	7.6	14	71	22	61	70	2	3	23	1.17
4971864--4971909	18	2.6	18	100	0	92	32	10	43	13	1.78
4973616--4973643	2	14.0	2	100	0	56	50	0	0	50	1.00
4977320--4977345	3	8.7	3	100	0	52	65	0	34	0	0.93
4985745--4985792	22	2.2	22	85	7	62	66	0	2	31	1.03
5004181--5004244	30	2.1	31	85	8	87	50	3	3	43	1.33
5004947--5005016	16	4.3	16	83	5	61	48	8	2	40	1.49
5004960--5005017	16	3.6	16	85	0	71	51	6	1	39	1.39
5035619--5035646	11	2.5	11	100	0	56	0	25	0	75	0.81
5045696--5045722	2	13.5	2	100	0	54	51	0	0	48	1.00
5052198--5052269	21	3.5	21	98	1	137	48	0	0	51	1.00
5052242--5052298	30	1.9	30	88	0	87	52	0	0	47	1.00
5052307--5052331	13	1.9	13	100	0	50	72	0	0	28	0.86
5073578--5073775	106	1.8	109	83	4	267	48	13	12	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5079025--5079076	25	2.0	26	92	3	88	32	7	17	42	1.77
5085010--5085107	49	2.0	49	95	0	178	37	3	33	25	1.72
5090878--5090909	2	16.0	2	100	0	64	50	0	0	50	1.00
5096095--5096134	16	2.6	16	80	4	55	32	2	0	65	1.06
5097729--5097756	2	14.0	2	100	0	56	50	0	0	50	1.00
5109071--5109095	12	2.1	12	100	0	50	16	8	8	68	1.38
5114067--5114100	18	1.9	17	88	5	50	32	11	26	29	1.92
5116660--5116702	20	2.2	19	87	4	59	48	0	0	51	1.00
5116652--5116716	22	3.0	22	75	20	59	50	0	0	49	1.00
5121143--5121176	17	2.0	17	88	11	52	52	0	2	44	1.16
5125748--5125777	2	15.0	2	92	0	51	53	0	0	46	1.00
5140434--5140458	2	12.5	2	100	0	50	48	0	0	52	1.00
5140954--5140989	2	18.0	2	100	0	72	50	0	0	50	1.00
5145775--5145813	18	2.2	18	85	0	51	53	2	35	7	1.43
5146236--5146260	13	1.9	13	100	0	50	24	20	16	40	1.91
5152755--5152788	15	2.4	14	95	5	59	38	0	0	61	0.96
5159317--5159469	52	2.9	52	88	3	220	32	18	4	45	1.70
5159483--5159533	22	2.4	21	81	12	59	49	23	7	19	1.74
5159498--5159538	11	3.7	11	80	0	55	48	29	2	19	1.61
5159845--5159992	73	2.0	73	90	0	233	39	22	12	25	1.89
5160591--5160738	73	2.0	73	89	0	224	39	22	11	25	1.88
5159488--5160979	746	2.0	746	97	0	2795	32	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5161370--5161510	52	2.7	49	81	12	158	31	18	4	46	1.68
5161547--5161585	11	3.5	11	82	0	51	56	5	0	38	1.22
5161547--5161591	22	2.0	23	91	4	74	51	6	0	42	1.28
5162499--5162529	2	15.5	2	100	0	62	48	0	0	51	1.00
5163070--5163178	30	3.7	29	73	13	80	53	3	3	39	1.36
5163109--5163179	30	2.4	30	80	20	87	52	2	0	45	1.15
5164579--5164622	17	2.7	16	80	13	54	65	4	0	29	1.12
5169457--5169509	3	17.7	3	100	0	106	67	0	0	32	0.91
5169605--5169642	17	2.1	19	85	9	53	71	0	0	28	0.87
5169636--5169667	14	2.1	16	88	11	50	68	6	6	18	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100