genome.fa.s113.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  62  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14643296--14643349	25	2.2	24	83	6	63	35	5	18	40	1.74
14643964--14644305	59	5.8	60	87	7	436	43	8	14	33	1.76
14643958--14644305	120	2.9	117	88	7	488	43	8	14	33	1.76
14648095--14648170	8	9.4	8	73	15	50	75	0	19	5	1.00
14648096--14648165	16	4.3	16	74	18	56	77	0	17	5	0.96
14649408--14649778	42	9.0	42	91	5	555	22	16	21	38	1.93
14649408--14649778	83	4.5	81	89	6	541	22	16	21	38	1.93
14649408--14649778	125	3.0	123	91	4	586	22	16	21	38	1.93
14649787--14649846	11	5.7	10	86	9	84	90	10	0	0	0.47
14649785--14649846	12	5.6	12	80	18	80	90	9	0	0	0.46
14649785--14649846	21	2.9	22	92	4	108	90	9	0	0	0.46
14649785--14649837	1	53.0	1	84	0	70	92	7	0	0	0.39
14650000--14650031	9	3.7	9	95	4	57	21	0	9	68	1.17
14650000--14650064	18	3.9	16	77	20	62	24	0	6	69	1.11
14650467--14650520	26	2.2	25	83	6	65	35	3	18	42	1.68
14650660--14650697	20	1.9	20	88	0	58	31	23	18	26	1.97
14651031--14651065	8	4.4	8	89	10	54	11	0	8	80	0.92
14651136--14651544	118	3.4	117	88	5	560	43	8	13	33	1.76
14655432--14655481	26	1.9	26	95	0	91	28	18	28	26	1.98
14656488--14656535	20	2.5	20	96	3	89	37	8	39	14	1.76
14657662--14658017	145	2.4	145	90	1	532	23	26	28	21	1.99
14658733--14659101	196	1.9	196	81	5	449	22	27	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14659950--14660000	26	2.0	26	88	0	75	27	19	21	31	1.97
14660683--14660953	148	1.8	148	83	3	357	22	27	29	20	1.99
14662011--14662061	26	2.0	26	88	7	77	25	19	27	27	1.99
14663432--14663484	26	2.0	26	96	0	97	28	20	24	26	1.99
14663458--14665148	538	3.2	530	79	7	1788	23	27	27	21	1.99
14666937--14667403	45	10.4	45	73	4	244	19	30	28	21	1.98
14666923--14667338	90	4.6	90	73	5	277	19	29	29	21	1.98
14667297--14667483	90	2.1	90	84	2	241	19	29	29	21	1.97
14667488--14667583	45	2.1	45	88	0	138	14	31	32	21	1.94
14667508--14667607	45	2.2	45	83	3	121	21	36	25	18	1.95
14676653--14676705	26	2.0	26	92	0	88	26	20	24	28	1.99
14676862--14677232	196	1.9	196	84	3	496	22	27	27	22	1.99
14678693--14679067	197	1.9	196	81	4	452	24	27	25	22	2.00
14678222--14679126	460	2.0	462	83	4	1173	24	27	25	21	1.99
14679908--14679960	26	2.0	26	96	0	97	28	20	24	26	1.99
14681392--14681421	12	2.5	12	94	0	51	3	33	30	33	1.74
14682679--14682731	26	2.0	26	92	0	88	30	20	22	26	1.98
14683024--14683075	26	2.0	26	96	3	97	26	21	25	26	1.99
14682528--14683299	344	2.2	344	80	6	821	25	28	26	19	1.99
14684408--14684460	26	2.0	26	92	0	88	28	22	24	24	2.00
14686552--14686604	26	2.0	26	92	0	88	28	18	24	28	1.98
14687943--14687994	26	2.0	25	92	3	86	30	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14689375--14689426	26	2.0	26	88	3	79	26	21	25	26	1.99
14694403--14694558	84	1.9	84	87	2	233	23	33	24	17	1.96
14698967--14699019	26	2.0	26	100	0	106	26	20	26	26	1.99
14700909--14701227	171	1.9	171	81	2	390	23	30	26	19	1.98
14701080--14701466	197	2.0	197	80	4	440	23	27	26	22	1.99
14703321--14703373	26	2.0	26	96	0	97	26	20	24	28	1.99
14704728--14704780	26	2.0	26	88	0	79	28	15	26	30	1.96
14704763--14705086	171	1.9	171	82	1	407	21	30	28	20	1.98
14704937--14705300	197	1.8	197	85	2	507	21	29	26	22	1.99
14706151--14706203	26	2.0	26	92	0	88	28	18	24	28	1.98
14707565--14707618	26	2.1	26	96	0	99	31	20	22	25	1.98
14707908--14707960	26	2.0	26	96	0	97	28	20	26	24	1.99
14707414--14708048	174	3.7	173	73	8	547	24	28	27	19	1.99
14707424--14708205	345	2.3	337	84	3	985	23	29	27	19	1.98
14710509--14710561	26	2.0	26	96	0	97	28	20	24	26	1.99
14711929--14712001	26	2.8	26	100	0	146	30	19	20	30	1.97
14714262--14714308	24	2.0	24	91	0	76	8	29	29	31	1.87
14714708--14714760	26	2.0	26	92	0	88	28	18	24	28	1.98
14718822--14718873	25	2.0	26	88	3	79	30	21	23	25	1.99
14719408--14719458	26	2.0	26	100	0	102	27	19	25	27	1.99
14722644--14722696	26	2.0	26	96	0	97	28	26	18	26	1.98
14723090--14723133	12	3.7	12	76	11	54	31	29	34	4	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14723282--14723312	12	2.6	12	89	0	53	22	16	41	19	1.89
14726803--14726855	26	2.0	26	96	0	97	26	24	22	26	2.00
14729389--14729441	26	2.0	26	96	0	97	28	26	18	26	1.98
14729304--14729926	174	3.6	173	73	7	537	19	27	28	24	1.99
14729731--14729784	26	2.1	26	96	0	99	25	22	20	31	1.98
14729159--14729954	345	2.4	331	81	5	906	19	28	28	23	1.98
14731147--14731199	26	2.0	26	92	0	88	28	24	18	28	1.98
14732050--14732413	197	1.8	197	83	2	480	21	25	29	22	1.99
14732570--14732622	26	2.0	26	88	0	79	30	26	15	28	1.96
14736421--14736473	26	2.0	26	85	0	70	30	22	16	30	1.96
14745493--14745591	45	2.2	45	85	3	128	23	34	30	12	1.91
14745605--14746144	45	12.0	45	77	1	436	19	30	31	18	1.96
14745625--14746218	90	6.6	88	74	8	374	19	29	31	19	1.97
14746966--14747339	197	1.9	197	80	6	445	22	26	27	23	2.00
14747484--14747536	26	2.0	26	92	0	88	28	24	20	26	1.99
14749128--14749180	26	2.0	26	92	0	88	28	24	18	28	1.98
14749253--14749641	158	2.5	158	79	1	429	19	26	28	25	1.99
14752635--14752687	26	2.0	26	92	0	88	28	24	20	26	1.99
14754057--14754109	26	2.0	26	96	0	97	26	24	20	28	1.99
14755476--14755531	26	2.2	26	86	0	76	30	21	21	26	1.98
14756371--14756757	198	2.0	198	87	1	562	20	26	28	24	1.99
14759048--14759100	26	2.0	27	92	7	92	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14759222--14759274	26	2.0	26	96	0	97	26	24	20	28	1.99
14758952--14759318	174	2.1	174	83	2	459	23	27	26	22	1.99
14758952--14759413	174	2.7	174	80	3	448	21	28	27	23	1.99
14760488--14760540	26	2.0	26	85	7	72	32	28	15	24	1.95
14763335--14763387	26	2.0	26	92	7	90	30	26	16	26	1.97
14766967--14767019	26	2.0	26	85	0	70	28	22	18	30	1.98
14769809--14769861	26	2.0	26	92	0	88	24	26	20	28	1.99
14771250--14771310	26	2.2	30	85	11	85	26	19	21	32	1.97
14772679--14772757	26	3.0	26	98	0	149	27	26	18	26	1.98
14774782--14774945	84	2.0	84	87	2	240	15	25	35	24	1.94
14777778--14777830	26	2.0	26	92	0	88	24	24	20	30	1.99
14779203--14779253	26	2.0	26	96	0	93	31	27	13	27	1.94
14781474--14781524	26	2.0	26	92	0	84	29	25	19	25	1.99
14781619--14781981	185	2.0	185	83	4	464	16	28	30	23	1.97
14784503--14784553	26	2.0	26	84	7	68	29	21	19	29	1.98
14784643--14784993	157	2.2	158	86	3	485	16	28	31	23	1.96
14787420--14787471	26	2.0	26	88	0	77	28	23	17	30	1.97
14794508--14794540	12	2.8	12	100	0	66	33	30	36	0	1.58
14794811--14794863	26	2.0	26	96	0	97	28	26	18	26	1.98
14794738--14795186	174	2.6	173	82	4	562	21	28	25	24	1.99
14794985--14795037	26	2.0	26	92	0	88	30	26	16	26	1.97
14798289--14798341	26	2.0	26	92	0	88	28	24	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14802270--14802644	197	1.9	197	80	5	436	22	26	28	22	1.99
14803655--14804041	197	2.0	197	82	2	481	20	26	29	23	1.99
14804792--14804844	27	1.9	28	92	3	90	50	13	9	26	1.71
14805342--14805756	171	2.4	171	83	3	487	18	26	30	25	1.98
14805739--14805791	26	2.0	26	92	0	88	28	24	18	28	1.98
14806609--14806661	26	2.0	26	88	0	79	30	20	16	32	1.95
14806843--14806876	12	2.8	12	86	0	50	17	20	52	8	1.71
14810983--14811035	26	2.0	26	96	0	97	28	26	18	26	1.98
14812981--14813033	26	2.0	26	92	0	88	30	24	18	26	1.98
14814404--14814456	26	2.0	26	92	0	88	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100