genome.fa.s113.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  64  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15042564--15044219	845	1.9	851	81	4	1978	21	28	28	22	1.99
15045310--15045385	26	2.9	26	94	0	134	28	26	17	27	1.97
15045468--15045845	158	2.4	158	85	3	485	18	29	29	22	1.97
15048662--15048711	26	1.9	26	91	0	82	24	30	18	28	1.97
15050187--15050558	196	1.9	196	83	2	478	24	27	25	22	2.00
15051359--15051411	26	2.0	26	85	7	72	28	18	24	28	1.98
15051721--15052136	197	2.1	197	80	1	476	25	26	26	20	1.99
15052975--15053030	26	2.2	26	100	0	112	30	19	21	28	1.98
15054392--15054444	26	2.0	26	100	0	106	26	20	26	26	1.99
15054744--15055116	197	1.9	197	83	1	487	25	24	26	23	2.00
15055995--15056047	26	2.0	26	82	13	65	32	15	22	30	1.94
15056535--15056587	26	2.0	26	100	0	106	26	20	26	26	1.99
15058077--15058520	197	2.3	197	82	3	570	23	25	26	24	2.00
15063214--15063483	148	1.8	148	81	0	333	22	29	28	19	1.98
15065597--15065918	169	1.9	170	81	1	387	22	30	27	19	1.98
15065793--15066158	197	1.9	196	83	6	481	24	29	24	21	1.99
15067005--15067057	26	2.0	26	92	0	88	30	20	20	28	1.98
15071016--15071310	159	1.9	159	84	2	396	24	29	27	18	1.98
15072384--15072436	26	2.0	26	88	0	79	28	20	24	26	1.99
15072529--15072558	12	2.5	12	88	0	51	16	46	16	20	1.84
15073789--15073844	26	2.1	28	86	6	80	33	17	23	25	1.96
15076700--15077011	171	1.8	171	81	2	385	22	30	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15079298--15079350	26	2.0	26	88	0	79	30	18	20	30	1.97
15085582--15085851	148	1.8	148	81	1	335	24	29	28	18	1.98
15086985--15087258	148	1.9	147	83	5	358	24	29	27	18	1.98
15089087--15089357	148	1.8	148	83	0	362	25	30	26	17	1.97
15089428--15089789	197	1.8	197	81	3	451	22	29	27	20	1.99
15090628--15090680	26	2.0	26	96	0	97	26	18	28	26	1.98
15093460--15093512	26	2.0	26	96	0	97	28	20	24	26	1.99
15093485--15093844	171	2.1	170	80	4	393	23	28	26	20	1.99
15096201--15096244	19	2.3	19	100	0	88	20	45	25	9	1.80
15099121--15099373	117	2.2	117	81	1	292	24	24	22	28	1.99
15099533--15099778	129	1.9	129	88	0	366	23	23	23	28	1.99
15106274--15106373	50	2.0	50	100	0	200	24	34	16	26	1.95
15113218--15113932	295	2.4	295	77	4	710	22	28	20	28	1.99
15113711--15114162	248	1.8	248	81	3	561	22	27	21	28	1.99
15116911--15117554	295	2.2	296	79	4	640	19	28	22	29	1.98
15121284--15121678	197	2.0	197	93	1	675	20	30	22	26	1.98
15122940--15123559	296	2.1	295	78	3	622	21	27	22	29	1.99
15125836--15126393	296	1.9	296	78	2	618	20	28	23	28	1.99
15125783--15126417	296	2.1	295	76	3	614	20	28	22	28	1.98
15132113--15132186	22	3.4	22	84	0	94	29	39	13	17	1.88
15134269--15134491	117	1.9	117	81	3	270	20	25	24	30	1.99
15134912--15134965	24	2.2	24	96	0	99	31	25	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15135940--15136488	296	1.9	293	81	3	663	19	27	23	28	1.98
15135910--15136520	296	2.1	293	79	3	654	20	27	23	28	1.99
15138837--15138886	22	2.3	22	92	0	82	32	42	12	14	1.82
15146579--15147840	296	4.3	298	73	7	804	19	27	23	29	1.98
15154773--15155451	296	2.3	296	75	7	644	20	27	22	29	1.99
15164443--15165058	295	2.1	294	79	6	649	19	28	23	28	1.98
15164693--15165476	295	2.7	295	74	7	672	20	28	22	28	1.99
15171228--15171785	295	1.9	297	80	6	659	18	27	23	29	1.98
15177192--15177247	26	2.2	26	86	0	76	26	33	17	21	1.96
15177200--15177249	26	1.9	26	91	0	82	28	34	14	24	1.93
15182456--15182544	45	2.0	45	81	0	106	25	20	24	29	1.99
15183207--15183257	22	2.3	22	82	0	66	27	41	13	17	1.87
15194887--15194996	47	2.3	47	87	3	159	21	24	24	29	1.99
15211588--15212378	297	2.7	295	76	8	696	19	28	23	28	1.98
15212517--15213171	297	2.2	293	78	4	631	18	27	23	30	1.98
15214502--15214608	45	2.4	45	83	0	124	26	28	19	25	1.99
15217289--15217625	178	1.9	178	79	6	387	17	29	22	29	1.97
15221428--15221513	45	1.9	45	85	4	120	24	18	31	25	1.98
15223973--15225091	296	3.8	293	76	4	775	28	23	27	20	1.99
15226246--15226471	63	3.7	60	75	10	179	36	13	15	34	1.87
15226872--15227264	63	6.3	62	73	12	281	36	15	15	33	1.89
15226872--15227264	125	3.1	125	79	5	359	36	15	15	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15226872--15227267	62	6.3	63	75	9	346	35	15	15	33	1.89
15229579--15229664	34	2.5	34	88	0	127	40	11	13	33	1.81
15234901--15234989	45	2.0	45	84	0	115	23	23	31	21	1.98
15237093--15237804	294	2.4	295	81	6	782	29	21	28	20	1.98
15237889--15237930	21	2.0	21	95	0	75	23	16	28	30	1.96
15239463--15239521	27	2.2	27	81	3	66	66	5	3	25	1.28
15241452--15245647	296	14.2	298	73	8	2300	28	23	28	19	1.98
15245533--15245859	179	1.8	179	80	3	390	28	24	29	18	1.98
15247741--15248447	296	2.4	293	76	10	685	31	22	26	19	1.98
15255798--15256488	295	2.3	295	77	8	674	28	23	27	20	1.99
15256234--15256763	281	1.9	282	81	4	658	28	23	28	20	1.99
15263139--15263808	296	2.3	296	78	5	678	28	24	27	19	1.98
15263351--15263984	297	2.1	295	79	5	677	28	24	27	19	1.99
15276589--15276693	47	2.2	47	98	0	201	28	25	22	22	1.99
15284311--15284876	296	1.9	296	78	2	618	28	24	26	20	1.99
15285677--15285764	44	2.0	45	84	6	117	20	25	31	22	1.98
15290706--15290811	45	2.4	45	83	0	131	25	21	28	24	1.99
15298758--15298844	45	1.9	45	86	4	122	26	17	31	25	1.97
15302315--15302422	47	2.3	47	96	0	198	26	22	27	23	1.99
15304011--15304135	45	2.8	44	76	9	126	21	24	30	23	1.99
15309937--15309995	26	2.2	27	87	3	84	66	5	5	23	1.32
15316472--15316687	117	1.8	118	80	6	260	29	22	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15327664--15328043	179	2.1	179	80	2	415	28	20	30	21	1.98
15330209--15330595	179	2.2	178	78	12	418	30	22	27	18	1.97
15331278--15331833	296	1.9	295	79	7	635	28	20	28	23	1.99
15334981--15335017	13	2.8	13	91	0	65	40	24	24	10	1.87
15341279--15341841	295	1.9	296	78	6	615	29	25	27	17	1.97
15343372--15343506	71	1.9	71	80	8	159	21	20	30	28	1.98
15353126--15354003	297	3.0	296	75	4	711	29	22	28	20	1.98
15368089--15368150	26	2.3	27	86	5	81	61	6	4	27	1.41
15372406--15372448	19	2.3	19	91	0	68	18	37	20	23	1.94
15380976--15381094	45	2.6	45	81	2	123	28	23	30	17	1.97
15400171--15400281	44	2.5	44	82	1	123	20	19	33	26	1.97
15400757--15400816	26	2.3	27	82	2	68	66	13	0	20	1.24
15406330--15406427	45	2.2	45	90	3	153	38	29	22	9	1.85
15417610--15417653	20	2.2	20	95	0	79	40	6	31	20	1.79
15424137--15424178	16	2.6	16	92	0	66	38	23	21	16	1.93
15424656--15424702	25	1.9	24	87	12	69	27	29	29	12	1.93
15430434--15430463	13	2.3	13	100	0	60	50	30	13	6	1.67
15437516--15437608	44	2.1	43	82	5	114	21	32	21	24	1.98
15440090--15440195	45	2.4	45	82	3	115	29	32	16	21	1.96
15444340--15444426	44	2.0	44	86	0	120	21	35	20	21	1.96
15447362--15447495	45	3.0	45	80	0	169	22	31	21	24	1.98
15448046--15448100	26	2.1	26	96	0	101	30	27	10	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15449645--15449746	45	2.3	45	82	0	114	20	32	26	20	1.97
15449662--15449777	45	2.6	45	85	0	142	21	34	22	21	1.97
15452203--15452313	45	2.5	45	83	5	136	21	35	21	21	1.96
15452226--15452346	45	2.7	45	80	2	118	21	34	18	25	1.96
15455109--15455160	26	2.0	26	85	3	70	36	1	13	48	1.54
15461241--15461643	205	2.0	197	94	3	707	24	28	18	29	1.98
15467942--15468046	45	2.3	45	83	3	122	22	28	20	27	1.99
15470263--15470362	45	2.2	45	83	0	119	28	35	19	18	1.94
15470306--15470458	45	3.4	45	73	10	134	25	33	16	23	1.96
15475445--15475898	58	7.7	57	78	11	418	35	13	6	43	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100