genome.fa.s113.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  55  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13114481--13114527	20	2.3	21	85	7	69	61	8	0	29	1.25
13114485--13114531	19	2.4	20	89	3	69	63	8	0	27	1.23
13114729--13114774	11	4.5	11	78	13	53	56	4	0	39	1.19
13115285--13115386	9	10.6	10	78	9	81	31	0	2	64	1.15
13115285--13115386	19	5.3	19	73	12	84	31	0	2	64	1.15
13115285--13115772	20	25.2	19	67	16	103	31	3	5	59	1.39
13115328--13115386	28	2.1	27	87	9	84	32	0	3	64	1.10
13115441--13115483	9	4.6	9	77	11	50	37	0	9	53	1.33
13115624--13115756	10	13.7	10	74	12	91	30	2	6	61	1.32
13116905--13116958	24	2.3	23	79	20	58	31	0	3	64	1.11
13122023--13122066	15	2.9	15	82	0	52	4	29	0	65	1.12
13122770--13122976	110	1.9	108	83	9	269	39	12	8	40	1.72
13124653--13124687	13	2.7	13	95	0	61	68	0	0	31	0.90
13125119--13125171	19	2.7	20	91	5	90	52	3	0	43	1.19
13125565--13125648	41	2.1	41	86	2	116	32	19	21	27	1.97
13137859--13137902	11	3.8	11	85	11	61	68	0	2	29	1.02
13141463--13141541	23	3.4	22	77	16	79	21	2	3	72	1.13
13141476--13141528	18	3.0	18	73	13	56	18	1	5	73	1.12
13141503--13141545	16	2.9	15	83	10	52	20	2	0	76	0.89
13141507--13141555	23	2.1	23	85	11	64	22	4	4	69	1.23
13145038--13145097	26	2.4	24	71	17	59	48	0	1	50	1.11
13146760--13146825	4	16.5	4	87	0	60	37	0	10	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13149157--13149216	10	6.0	10	72	12	52	11	1	3	83	0.84
13149157--13149203	16	2.8	16	87	6	58	12	2	2	82	0.84
13149157--13149311	22	7.1	22	68	12	72	16	3	3	76	1.07
13149242--13149318	6	12.7	6	74	16	61	15	5	1	77	1.00
13149342--13149621	58	4.7	58	86	6	366	44	7	13	34	1.73
13149656--13149684	6	4.8	6	100	0	58	17	0	13	68	1.20
13154755--13154962	41	5.0	41	92	1	326	23	17	24	34	1.96
13154755--13154945	83	2.3	82	92	1	319	24	17	23	35	1.95
13154973--13155021	9	5.8	8	83	11	62	85	8	0	6	0.73
13154980--13155045	17	3.6	19	82	17	86	81	7	1	9	0.92
13154973--13155040	8	7.9	8	83	15	73	83	7	0	8	0.80
13155279--13155309	3	10.7	3	93	6	55	32	0	0	67	0.91
13155271--13155306	14	2.6	13	87	12	54	33	0	0	66	0.92
13156217--13156372	16	10.1	15	70	18	65	17	1	3	76	1.03
13156285--13156372	6	14.7	6	75	17	85	17	2	0	80	0.81
13156297--13156372	30	2.5	31	83	14	97	17	1	0	81	0.76
13156285--13156372	23	3.7	23	85	10	106	17	2	0	80	0.81
13156396--13156731	59	5.7	58	86	4	428	45	7	13	33	1.71
13156397--13156731	119	2.8	116	85	8	437	45	6	13	33	1.70
13156768--13156796	6	4.8	6	100	0	58	17	0	13	68	1.20
13163118--13163163	19	2.4	19	85	7	58	43	0	0	56	0.99
13163363--13163398	14	2.6	14	95	0	63	33	0	2	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13164821--13164942	7	17.0	7	71	16	63	22	1	2	72	1.05
13164821--13164942	15	8.5	13	72	18	75	22	1	2	72	1.05
13164821--13164993	28	6.3	27	71	20	112	24	3	1	70	1.12
13164830--13164986	20	7.5	19	68	21	73	26	3	1	68	1.14
13164826--13164911	24	3.7	23	74	14	77	22	2	2	73	1.06
13164823--13164928	46	2.3	46	82	11	119	22	1	2	72	1.07
13165015--13165067	12	4.7	12	78	19	60	33	3	1	60	1.26
13165950--13166066	24	4.8	23	71	16	76	23	3	1	70	1.11
13165970--13166012	13	3.1	13	83	12	50	27	0	2	69	1.00
13166081--13166433	60	5.9	59	84	7	437	45	7	11	36	1.67
13173521--13173570	21	2.4	21	89	0	73	54	12	16	18	1.72
13175490--13175550	10	6.1	10	92	3	88	86	0	9	3	0.67
13175490--13175537	1	48.0	1	82	0	60	91	0	6	2	0.48
13176519--13176772	42	6.0	43	82	5	284	26	15	18	39	1.90
13176519--13176768	85	2.9	84	86	5	317	26	15	17	40	1.89
13176948--13177072	7	18.0	7	69	14	64	20	2	3	73	1.08
13176946--13176983	20	2.0	20	94	5	69	18	5	2	73	1.14
13176951--13177045	20	5.1	19	72	16	58	20	3	3	73	1.10
13176946--13176999	18	2.9	19	86	8	58	20	3	3	72	1.16
13176994--13177083	28	3.3	27	73	18	87	23	3	2	71	1.13
13176975--13177079	56	1.9	55	83	14	137	21	2	2	72	1.11
13177147--13177199	21	2.3	23	78	9	65	33	5	1	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13178160--13178200	20	2.2	20	86	8	59	14	9	0	75	1.04
13178171--13178231	6	10.0	6	75	15	54	16	6	0	77	0.98
13178192--13178226	18	1.9	18	94	0	61	20	5	0	74	1.02
13178236--13178647	58	6.9	59	80	7	395	43	7	11	36	1.70
13178255--13178647	118	3.3	118	86	3	520	42	8	12	36	1.72
13182063--13182104	11	3.8	11	81	6	50	47	0	0	52	1.00
13182544--13182576	2	16.5	2	93	0	57	54	0	45	0	0.99
13188247--13188286	20	2.1	19	95	4	71	72	0	27	0	0.85
13191945--13192073	62	2.1	63	88	1	188	23	10	25	41	1.85
13195142--13195172	15	2.0	16	93	6	55	25	29	0	45	1.54
13200754--13200778	1	25.0	1	100	0	50	0	0	0	100	0.00
13202704--13202739	10	3.6	10	84	0	54	36	2	2	58	1.27
13202923--13202975	5	11.0	5	84	15	60	83	13	3	0	0.79
13202926--13202995	23	3.1	22	79	6	77	82	11	4	1	0.86
13202946--13202989	15	2.7	17	89	6	65	79	13	4	2	0.98
13202923--13203000	28	2.9	27	78	14	88	82	11	5	1	0.89
13204479--13204536	16	3.6	15	77	13	62	48	27	5	18	1.70
13204468--13204536	33	2.1	33	84	10	88	49	27	4	18	1.67
13204665--13204941	142	2.0	142	96	0	511	39	11	15	33	1.84
13216791--13216842	15	3.3	15	69	10	50	38	7	15	38	1.76
13216783--13216845	32	2.0	32	100	0	126	41	7	19	31	1.80
13216815--13217890	48	22.2	48	84	8	1283	28	11	25	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13216735--13216890	81	1.9	80	94	1	276	33	8	23	34	1.86
13216815--13218348	96	15.6	96	81	9	1648	29	11	24	33	1.91
13217870--13217906	16	2.3	16	100	0	74	18	18	40	21	1.91
13217822--13217955	65	2.1	65	88	5	200	24	14	30	29	1.95
13217886--13218348	48	9.4	49	83	6	526	30	12	24	31	1.93
13218512--13218563	5	11.0	5	87	4	65	84	13	1	0	0.70
13218515--13218582	22	3.1	21	85	8	82	83	11	2	1	0.82
13218512--13218582	15	4.5	15	81	11	72	83	12	2	1	0.83
13218512--13218582	32	2.2	32	85	7	92	83	12	2	1	0.83
13220043--13220104	33	1.9	32	83	9	81	50	27	3	19	1.63
13220240--13220522	142	2.0	141	94	2	496	39	11	15	33	1.83
13224042--13224102	23	2.7	23	92	5	97	54	0	0	45	1.00
13224529--13224553	2	12.5	2	100	0	50	48	0	0	52	1.00
13225176--13225254	25	3.1	25	71	10	70	68	3	0	27	1.07
13228262--13228317	2	28.0	2	92	7	96	1	48	0	50	1.11
13231710--13231736	2	13.5	2	100	0	54	51	0	0	48	1.00
13236090--13236150	21	2.9	21	97	0	113	52	26	4	16	1.64
13236543--13236647	3	36.7	3	75	16	80	60	1	3	33	1.25
13236553--13236630	23	3.5	23	72	16	65	56	2	5	35	1.35
13237327--13237476	76	2.0	76	81	2	176	37	10	19	32	1.86
13237771--13237942	60	2.9	60	83	4	179	37	15	26	20	1.92
13237828--13237962	60	2.2	60	84	2	164	40	15	23	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13238932--13238972	16	2.6	16	92	0	64	2	7	9	80	0.99
13242071--13242197	41	3.0	42	84	13	174	63	5	11	19	1.46
13243049--13243112	19	3.2	19	75	16	58	73	3	4	18	1.14
13243509--13243548	21	1.9	21	94	0	71	52	25	5	17	1.64
13243944--13244038	3	33.7	3	72	16	60	61	5	2	31	1.30
13243986--13244037	22	2.2	24	83	12	65	59	9	0	30	1.29
13244446--13244470	13	1.9	13	100	0	50	32	8	8	52	1.60
13246423--13246457	18	1.9	18	94	0	61	20	0	14	65	1.26
13246422--13246485	29	2.2	30	85	2	94	21	1	12	64	1.36
13246441--13246485	17	2.6	18	82	7	56	20	2	11	66	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100