genome.fa.s113.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  47  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11642346--11642398	22	2.4	22	90	6	81	50	1	0	47	1.12
11642952--11643008	24	2.3	25	77	14	64	45	0	0	54	0.99
11642959--11643020	30	2.1	31	87	6	92	43	0	0	56	0.99
11648731--11648767	3	12.3	3	100	0	74	67	0	0	32	0.91
11648849--11648935	30	3.1	28	78	8	88	29	4	3	62	1.32
11648954--11649090	30	4.6	30	70	9	93	50	2	6	40	1.40
11650983--11651016	18	1.9	18	88	5	52	76	0	5	17	0.98
11653674--11653748	26	2.9	26	77	0	87	18	24	21	36	1.95
11653866--11653932	3	22.3	3	96	0	125	32	1	0	65	1.02
11653953--11653988	5	7.2	5	87	0	54	0	13	0	86	0.58
11653935--11653990	15	3.8	15	85	2	78	0	14	3	82	0.81
11653935--11653988	19	2.8	19	83	8	56	0	14	3	81	0.82
11654337--11654395	31	1.9	31	82	6	75	28	5	33	32	1.79
11654846--11654884	15	2.3	18	87	12	57	5	0	7	87	0.68
11665087--11665120	8	4.2	8	88	0	50	85	2	0	11	0.71
11665878--11666413	119	4.5	119	80	5	530	19	22	15	42	1.88
11665878--11666445	237	2.4	238	80	2	579	19	22	15	43	1.88
11666718--11666752	16	2.2	16	89	0	52	14	22	20	42	1.88
11666943--11667004	12	5.1	11	81	13	52	1	14	3	80	0.91
11666954--11667004	19	2.6	19	84	9	59	0	15	3	80	0.86
11667827--11667875	5	10.0	5	77	18	50	18	2	4	75	1.06
11667820--11667875	18	3.3	17	79	16	55	16	3	3	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11669023--11669069	18	2.5	19	80	13	53	61	0	0	38	0.96
11670065--11670097	15	2.1	16	94	5	59	63	0	0	36	0.95
11671062--11671234	60	2.9	60	79	6	181	34	12	4	48	1.61
11671179--11671387	72	2.9	72	89	4	316	38	10	5	45	1.61
11671303--11671334	14	2.3	14	94	0	55	31	0	3	65	1.08
11671317--11671513	60	3.3	59	85	5	256	37	9	3	49	1.52
11672889--11672931	6	6.7	6	82	10	50	79	2	2	16	0.95
11672861--11672931	27	2.6	28	82	10	76	76	5	2	15	1.10
11672889--11672931	14	3.3	13	81	9	52	79	2	2	16	0.95
11672861--11672931	35	2.1	35	84	7	94	76	5	2	15	1.10
11673194--11673411	43	5.1	43	82	8	139	43	16	16	23	1.88
11673194--11673370	43	4.1	44	85	7	206	42	14	18	23	1.87
11673460--11673514	28	2.0	28	82	7	67	49	10	5	34	1.61
11673789--11673826	20	1.9	20	84	10	51	28	10	13	47	1.76
11673857--11674129	21	12.5	21	75	14	198	38	16	9	35	1.81
11673857--11674131	43	6.3	43	77	9	202	38	16	9	35	1.80
11673899--11674133	86	2.7	85	81	7	267	40	16	8	34	1.79
11674117--11674156	21	2.0	20	90	9	64	55	10	5	30	1.54
11674835--11674872	20	2.0	20	84	5	51	15	26	7	50	1.72
11679172--11679220	23	2.2	22	85	3	62	40	10	8	40	1.69
11679203--11679354	52	2.7	56	80	11	186	37	13	5	44	1.66
11679206--11679548	58	5.9	57	76	11	270	39	10	4	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11687487--11687535	4	12.8	4	75	16	50	20	2	2	75	1.00
11687487--11687535	21	2.3	21	86	13	66	20	2	2	75	1.00
11687487--11687535	10	4.6	11	77	22	52	20	2	2	75	1.00
11687497--11687545	12	4.5	11	78	21	50	20	2	6	71	1.18
11687486--11687536	17	2.7	19	77	16	61	19	1	1	76	0.98
11688582--11688624	17	2.5	17	84	3	59	30	2	2	65	1.18
11688722--11688757	17	2.1	17	94	0	63	47	8	0	44	1.33
11688892--11688987	48	2.1	46	88	5	140	58	6	8	27	1.51
11693009--11693064	10	5.6	10	80	14	53	83	0	10	5	0.78
11693014--11693087	8	8.6	8	80	14	60	77	0	13	9	1.00
11693012--11693071	27	2.2	28	87	3	86	81	0	11	6	0.86
11693021--11693087	9	7.6	9	77	17	52	74	0	14	10	1.07
11693022--11693064	10	4.4	10	94	2	70	81	0	11	6	0.87
11693013--11693103	17	5.2	17	80	10	87	75	0	16	7	1.02
11694272--11694334	14	4.8	14	71	15	62	41	6	17	34	1.75
11694272--11694358	38	2.3	38	87	0	120	42	6	14	35	1.73
11694352--11694705	109	3.3	108	88	3	489	36	11	14	36	1.84
11694601--11694692	44	2.1	44	80	8	98	38	11	16	33	1.85
11694877--11694905	15	1.9	15	100	0	58	27	24	13	34	1.93
11694880--11694913	15	2.3	15	89	0	50	35	20	11	32	1.89
11695030--11695061	16	1.9	17	93	6	57	40	9	12	37	1.75
11695473--11695521	4	12.8	4	75	16	50	22	2	0	75	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11695475--11695520	17	2.7	17	84	15	60	23	2	0	73	0.94
11695473--11695515	23	2.0	21	90	9	68	23	2	0	74	0.93
11696559--11696591	17	1.9	17	93	0	57	33	3	6	57	1.38
11696860--11696947	44	2.0	43	86	6	124	50	4	10	35	1.57
11702938--11702979	20	2.1	20	86	8	59	40	7	2	50	1.43
11703720--11703766	24	2.0	24	83	8	60	55	0	2	42	1.12
11704773--11704824	18	2.8	17	83	11	50	19	0	30	50	1.48
11704854--11704902	19	2.5	19	76	3	53	16	2	32	48	1.57
11707286--11707439	55	2.8	55	80	6	168	27	12	11	48	1.75
11711281--11711324	23	1.9	23	100	0	88	50	9	6	34	1.61
11711476--11711524	25	1.9	26	83	4	64	73	8	6	12	1.24
11712032--11712108	33	2.2	33	84	11	102	51	32	1	14	1.50
11712662--11712692	12	2.5	12	94	5	53	38	0	0	61	0.96
11713240--11713294	13	4.2	13	79	9	58	20	1	16	61	1.43
11713234--11713309	26	2.9	26	82	0	89	22	3	18	55	1.59
11713610--11713651	3	14.0	3	100	0	84	33	0	0	66	0.92
11714379--11714405	2	13.5	2	100	0	54	48	0	0	51	1.00
11718190--11718214	13	1.9	13	100	0	50	40	16	0	44	1.47
11723015--11723400	207	1.9	205	82	11	486	34	12	6	46	1.68
11723443--11723478	13	2.8	13	86	0	54	69	5	0	25	1.10
11724380--11724504	63	2.0	63	84	3	162	43	15	16	24	1.87
11724444--11724622	42	4.2	42	88	1	241	46	13	16	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11724441--11724622	84	2.2	85	87	1	267	46	13	16	23	1.82
11724870--11724907	20	1.9	20	88	0	58	34	28	7	28	1.85
11724953--11725007	21	2.6	22	85	8	78	40	10	7	41	1.68
11726119--11726167	5	9.8	5	84	8	64	2	12	0	85	0.68
11726117--11726161	14	3.0	15	90	6	65	4	13	0	82	0.82
11726119--11726170	11	4.5	11	75	17	52	1	11	0	86	0.65
11730467--11730863	204	1.9	206	83	8	508	33	10	7	47	1.67
11731724--11731764	7	5.7	7	94	2	64	85	2	0	12	0.70
11731729--11731775	13	3.5	13	83	13	60	82	4	0	12	0.80
11731724--11731773	21	2.3	22	83	13	68	82	4	0	14	0.82
11732328--11732430	6	17.2	6	73	7	75	45	6	5	41	1.55
11732328--11732430	8	12.9	8	70	8	75	45	6	5	41	1.55
11732321--11732394	34	2.2	34	85	9	98	45	2	9	41	1.50
11732932--11732973	22	2.0	22	90	4	68	47	2	0	50	1.14
11733629--11733657	12	2.3	13	94	5	51	44	0	0	55	0.99
11734268--11734323	25	2.2	26	83	3	69	66	1	5	26	1.23
11737964--11738102	64	2.2	65	79	7	151	43	9	15	31	1.78
11738333--11738451	64	1.9	63	82	5	150	44	10	15	29	1.80
11744154--11744187	14	2.4	14	90	9	52	5	0	5	88	0.64
11744732--11744793	30	2.1	30	81	6	72	32	0	8	59	1.26
11744835--11745058	59	3.8	57	80	8	227	47	3	12	36	1.58
11744953--11745083	58	2.3	57	80	5	147	51	6	9	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11753730--11753778	24	2.0	24	92	0	80	42	4	24	28	1.73
11763382--11763415	17	1.9	18	88	5	52	35	35	2	26	1.72
11765844--11765879	13	2.8	13	86	0	54	69	5	0	25	1.10
11766904--11767023	63	1.9	63	84	3	161	45	13	17	24	1.84
11766968--11767230	42	6.2	42	90	0	391	44	14	18	23	1.86
11767568--11767616	21	2.3	21	89	10	82	38	12	10	38	1.77
11767579--11767621	21	2.0	21	90	0	68	37	13	9	39	1.78
11767913--11768016	48	2.2	48	85	3	138	27	24	7	40	1.82
11768744--11768822	22	3.6	22	86	8	117	3	12	0	83	0.77
11768744--11768822	10	7.5	10	80	8	86	3	12	0	83	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100