genome.fa.s113.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  85  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17169592--17169722	35	3.8	35	78	8	133	32	12	16	38	1.86
17169750--17169851	34	3.0	33	76	9	98	40	10	12	36	1.78
17169937--17170047	23	4.9	22	66	7	69	42	13	6	37	1.70
17169939--17170046	46	2.3	46	85	3	146	41	13	6	37	1.71
17169939--17170045	22	4.7	22	67	15	65	42	14	6	37	1.71
17170105--17170173	23	3.0	23	67	16	61	40	15	10	33	1.81
17175991--17176033	9	4.8	9	77	11	52	74	0	0	25	0.82
17181637--17181671	18	1.9	18	88	0	52	28	22	8	40	1.84
17183293--17183334	22	2.0	21	86	13	59	14	0	9	76	1.02
17185381--17185454	30	2.5	30	86	0	103	40	1	20	37	1.61
17191510--17191544	16	2.1	18	89	10	56	31	0	0	68	0.90
17191813--17191842	15	2.0	15	100	0	60	60	13	6	20	1.55
17192312--17192351	14	2.9	14	85	11	55	62	0	0	37	0.95
17192622--17192647	3	8.7	3	100	0	52	69	0	0	30	0.89
17193493--17193539	8	5.8	8	76	14	51	17	0	10	72	1.12
17193492--17193537	17	2.8	17	83	3	58	17	0	10	71	1.13
17193486--17193536	25	2.1	23	89	7	75	15	0	9	74	1.06
17194159--17194183	13	1.9	13	100	0	50	64	4	0	32	1.12
17204200--17204275	32	2.4	31	80	10	82	18	15	25	40	1.90
17204218--17204293	32	2.4	32	86	4	91	18	13	23	44	1.85
17206817--17206849	12	2.8	12	100	0	66	33	0	6	60	1.21
17214619--17214665	25	1.9	25	82	4	60	44	4	21	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17215404--17215472	10	7.6	9	74	19	63	81	2	14	1	0.88
17216951--17217009	22	2.7	22	84	5	75	37	6	16	38	1.76
17217612--17217858	41	5.9	42	85	4	302	28	12	17	42	1.85
17217612--17217858	85	2.9	83	83	5	309	28	12	17	42	1.85
17217606--17217862	126	2.0	126	85	5	351	28	11	19	40	1.86
17217824--17217998	44	4.0	44	81	4	201	24	12	18	45	1.84
17218242--17218287	3	15.0	3	82	13	58	28	2	0	69	1.00
17218600--17218631	11	2.8	12	81	18	50	40	9	6	43	1.62
17218763--17218814	22	2.3	23	93	3	88	63	0	34	1	1.06
17218776--17218820	19	2.4	18	78	10	54	64	0	33	2	1.06
17219145--17219174	14	2.1	15	93	6	53	73	0	3	23	0.98
17220234--17220274	19	2.2	19	90	0	64	36	24	0	39	1.56
17225876--17225926	26	2.0	25	85	11	68	29	5	5	58	1.45
17226128--17226189	13	5.0	12	75	7	61	54	0	3	41	1.16
17229051--17229092	10	4.4	9	88	8	57	88	2	2	7	0.69
17229551--17229790	117	2.1	118	96	1	448	44	10	20	23	1.83
17230200--17230331	65	2.0	65	100	0	264	38	9	16	35	1.81
17230974--17231022	18	2.7	18	75	12	55	24	22	10	42	1.84
17231347--17231389	22	2.0	22	90	0	68	30	18	16	34	1.93
17231416--17231471	22	2.5	22	79	0	58	26	16	16	41	1.88
17231552--17231622	22	3.2	22	86	7	92	32	16	15	35	1.91
17231552--17231636	22	3.9	22	83	9	86	31	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17231742--17231806	22	3.0	21	76	14	60	35	24	10	29	1.89
17231684--17232068	132	2.9	132	79	7	433	26	18	14	40	1.89
17231894--17231936	22	2.0	22	85	0	59	32	23	13	30	1.93
17232006--17232095	22	4.1	21	82	4	81	34	20	12	33	1.89
17232101--17232193	37	2.5	37	84	6	100	15	13	20	50	1.77
17231542--17232436	455	2.0	454	84	2	1179	25	16	15	42	1.87
17232142--17232501	132	2.7	133	80	5	390	25	15	15	44	1.85
17233950--17234012	17	3.6	17	74	4	63	20	1	1	76	0.96
17234288--17234350	3	21.3	3	87	9	94	66	0	1	31	1.01
17234499--17234538	21	1.9	21	85	10	55	55	27	0	17	1.43
17234508--17234637	28	4.6	28	77	12	122	52	26	0	20	1.47
17234508--17234548	21	1.9	22	85	14	59	51	24	0	24	1.49
17234579--17234625	7	6.7	7	76	9	51	48	36	0	14	1.44
17234685--17234740	15	3.7	15	83	11	69	55	25	0	19	1.43
17234678--17234726	22	2.2	22	82	7	55	55	26	0	18	1.43
17234678--17234740	15	4.2	14	80	10	63	55	25	0	19	1.43
17241015--17241069	20	2.6	21	72	24	53	32	0	3	63	1.12
17241154--17241191	19	2.0	20	84	5	51	34	0	0	65	0.93
17244734--17244778	22	2.0	22	82	0	54	51	13	6	28	1.66
17245300--17245356	19	2.9	19	76	5	60	45	7	5	42	1.53
17245346--17245397	10	5.2	10	78	0	50	57	0	1	40	1.10
17245330--17245398	30	2.3	29	80	7	75	49	1	4	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17245307--17245397	40	2.3	40	82	1	103	50	3	4	41	1.38
17246222--17246287	34	1.9	34	84	6	89	54	7	1	36	1.38
17246257--17246314	30	1.9	30	89	0	89	56	5	1	36	1.32
17246292--17246348	19	2.9	19	76	5	60	59	5	1	33	1.30
17246287--17246376	20	4.3	20	73	9	65	56	6	1	35	1.33
17246222--17246441	10	21.7	10	63	12	56	54	7	0	36	1.35
17246673--17246759	9	9.8	9	73	23	60	25	0	2	72	0.96
17246687--17246759	9	8.5	8	80	19	85	23	0	2	73	0.95
17246678--17246759	18	4.6	18	85	13	98	23	0	2	74	0.94
17246978--17247057	19	4.2	19	74	4	72	35	2	6	56	1.38
17247039--17247080	19	2.2	19	86	0	57	47	0	9	42	1.36
17246976--17247080	10	11.2	9	68	14	52	40	1	6	51	1.39
17247181--17247327	19	7.4	20	69	12	81	31	2	9	56	1.43
17247230--17247312	30	2.7	30	80	9	89	32	2	9	55	1.45
17247169--17247324	79	2.0	78	88	3	233	32	2	9	55	1.46
17247359--17247521	9	16.9	9	71	11	83	35	1	5	57	1.30
17247377--17247523	10	15.0	10	75	11	117	37	1	5	55	1.31
17247886--17247923	18	2.1	18	85	9	51	47	0	2	50	1.15
17247952--17247990	7	5.4	7	96	3	69	51	0	0	48	1.00
17247973--17248015	21	2.0	22	86	9	61	37	0	2	60	1.10
17248246--17248370	62	2.0	63	84	1	162	31	26	18	24	1.98
17248807--17248850	19	2.3	19	80	7	54	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17249209--17249255	16	2.9	16	81	6	58	59	0	10	29	1.31
17249209--17249254	17	2.8	16	80	6	56	58	0	10	30	1.32
17249839--17249868	15	2.0	15	93	0	51	43	0	0	56	0.99
17250237--17250276	17	2.4	17	82	0	53	47	12	10	30	1.74
17250454--17250498	23	2.0	23	81	0	54	37	4	26	31	1.76
17250791--17250834	19	2.3	19	84	0	52	47	0	2	50	1.13
17251558--17251620	31	2.1	30	90	3	99	39	12	3	44	1.59
17251564--17251632	31	2.2	31	84	5	86	43	11	2	42	1.56
17251464--17251752	151	1.9	152	80	12	344	49	10	4	35	1.57
17251738--17251783	22	2.1	22	84	8	58	69	2	4	23	1.17
17251992--17252026	18	1.9	18	100	0	70	37	5	5	51	1.50
17252535--17252578	19	2.4	19	81	11	56	27	4	11	56	1.53
17253230--17253530	96	3.1	95	79	7	252	41	10	9	37	1.74
17258689--17258776	8	10.6	8	88	9	88	78	0	13	7	0.96
17258692--17258764	16	4.4	16	89	8	110	76	0	13	9	1.01
17258692--17258771	24	3.3	24	89	8	110	77	0	13	8	0.99
17259936--17260022	40	2.2	40	87	2	120	22	9	22	44	1.81
17259863--17260159	39	7.5	39	74	8	213	25	12	18	43	1.85
17261479--17261532	23	2.3	22	78	12	54	29	1	1	66	1.12
17261489--17261567	33	2.5	31	85	8	104	29	0	3	67	1.08
17262140--17262294	78	2.0	78	98	0	301	42	8	14	34	1.76
17264716--17264758	18	2.4	17	85	14	52	44	2	2	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17264832--17264909	32	2.4	32	82	0	93	52	7	2	37	1.44
17264923--17264960	19	2.1	18	90	5	58	36	15	0	47	1.46
17265197--17265282	32	2.7	31	78	5	91	37	3	5	53	1.42
17266915--17266940	2	13.0	2	100	0	52	50	0	0	50	1.00
17270973--17271350	195	1.9	195	95	2	679	37	14	11	37	1.81
17271835--17271894	26	2.2	28	80	11	72	30	0	5	65	1.14
17285913--17285942	15	1.9	16	93	6	53	73	3	6	16	1.18
17286792--17286833	21	2.0	21	90	9	68	11	4	50	33	1.60
17287250--17287275	12	2.2	12	100	0	52	7	7	57	26	1.54
17287338--17287398	18	3.4	17	74	17	52	19	4	6	68	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100