genome.fa.s113.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  99  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19585585--19585699	5	23.2	5	89	5	135	39	3	3	53	1.35
19586585--19586673	35	2.6	35	81	13	96	19	4	3	73	1.15
19586669--19586717	20	2.4	20	86	3	62	26	2	4	67	1.19
19586575--19586698	61	2.0	62	80	10	139	20	4	3	71	1.18
19588450--19588485	17	2.1	17	89	0	54	80	8	0	11	0.90
19589742--19589767	10	2.6	10	100	0	52	38	7	30	23	1.83
19592765--19592796	16	1.9	16	93	6	55	75	3	0	21	0.95
19593834--19593879	20	2.3	20	100	0	92	39	15	13	32	1.85
19594017--19594077	13	5.2	13	67	28	55	39	9	13	37	1.77
19593990--19594505	21	22.9	21	72	15	313	38	10	13	37	1.80
19593994--19594482	46	10.8	46	83	7	524	38	11	13	36	1.80
19593994--19594352	139	2.6	138	87	4	508	39	11	13	35	1.81
19594523--19594570	24	2.0	22	84	11	60	41	4	14	39	1.65
19598209--19598243	2	17.5	2	93	0	61	51	2	0	45	1.16
19600940--19600964	5	5.0	5	100	0	50	60	0	0	40	0.97
19603593--19603629	2	18.5	2	100	0	74	48	0	0	51	1.00
19604896--19605012	57	2.1	57	98	0	225	31	5	11	50	1.63
19605867--19606042	90	2.0	90	98	0	343	46	11	11	30	1.77
19606505--19606567	30	2.1	30	93	0	108	34	17	7	39	1.79
19611349--19611404	17	3.4	17	76	14	62	60	3	0	35	1.14
19611352--19611405	16	3.3	16	82	14	74	59	1	0	38	1.08
19617065--19617182	60	2.0	60	93	0	200	38	6	22	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19621667--19621695	2	14.5	2	100	0	58	51	0	0	48	1.00
19626767--19626813	23	2.0	24	87	4	69	40	12	0	46	1.42
19627764--19627809	19	2.4	20	83	16	62	71	0	0	28	0.86
19627778--19627842	28	2.2	30	91	5	107	73	0	0	26	0.83
19631324--19631389	30	2.2	30	79	15	75	34	15	7	42	1.75
19633717--19633766	26	1.9	26	91	0	82	42	12	26	20	1.86
19634413--19634828	207	2.0	207	100	0	832	37	9	17	35	1.81
19648578--19648617	17	2.4	17	87	8	55	17	0	5	77	0.94
19648770--19648826	9	6.7	9	74	11	57	10	0	21	68	1.19
19648760--19648826	24	2.8	24	86	0	89	11	0	19	68	1.20
19649096--19649170	31	2.4	31	86	0	105	38	12	6	42	1.68
19649916--19649964	9	5.4	9	82	0	62	14	0	20	65	1.27
19650163--19650202	20	2.0	20	95	0	71	25	17	25	32	1.97
19650256--19650338	31	2.7	31	77	7	96	36	10	13	39	1.79
19659891--19659922	3	10.7	3	100	0	64	65	0	0	34	0.93
19659935--19659971	19	1.9	19	88	0	56	59	0	5	35	1.20
19662933--19662982	16	2.8	18	76	11	50	42	4	18	36	1.69
19663169--19663487	168	1.9	168	85	3	437	39	7	11	41	1.70
19663549--19663998	182	2.5	180	80	5	453	39	8	9	43	1.66
19665565--19665599	16	2.2	16	94	0	61	42	11	11	34	1.77
19666532--19666581	20	2.5	20	90	0	73	40	14	8	38	1.75
19671169--19672547	181	7.7	181	76	6	1098	41	7	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19672459--19672638	89	2.0	89	86	4	247	46	7	8	37	1.63
19672279--19672817	270	2.0	270	82	2	652	43	7	9	39	1.66
19672549--19676408	181	21.3	181	71	10	1720	40	7	9	41	1.67
19672549--19681932	543	17.2	538	70	13	2631	40	8	9	41	1.68
19672549--19681952	362	25.9	360	69	12	3460	40	8	9	41	1.68
19676432--19677244	182	4.5	180	77	6	749	40	8	10	40	1.69
19675861--19676995	606	1.9	603	81	5	1394	40	7	9	41	1.67
19676608--19678666	699	2.9	697	76	8	1518	40	7	9	41	1.67
19677300--19681952	181	25.8	181	74	8	2743	40	8	9	41	1.68
19677432--19681952	542	8.4	537	71	11	1854	40	8	9	41	1.68
19679118--19681740	535	4.9	530	75	7	1900	40	8	10	40	1.70
19679157--19681932	716	3.9	711	75	9	1793	40	8	10	40	1.70
19681981--19683201	177	6.8	179	74	8	726	40	7	11	41	1.68
19682011--19683227	356	3.4	358	81	5	1086	40	7	10	41	1.68
19683115--19683408	159	1.8	161	81	7	364	39	6	9	45	1.62
19683352--19683489	67	2.1	67	85	0	186	44	5	11	38	1.65
19683538--19684008	177	2.6	178	82	5	535	41	6	9	42	1.61
19683838--19683885	17	2.7	18	81	12	64	45	4	8	41	1.53
19683538--19684035	180	2.8	180	82	6	582	42	6	9	41	1.63
19683720--19684362	329	1.9	331	82	5	800	42	6	8	42	1.59
19684434--19686570	357	5.9	351	74	9	1259	40	8	9	41	1.66
19684420--19686882	181	13.8	181	75	6	1761	40	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19685541--19685588	18	2.8	17	84	9	53	45	4	10	39	1.58
19684428--19686766	722	3.2	707	76	8	2040	40	8	9	41	1.67
19696235--19696259	12	2.1	12	100	0	50	24	28	24	24	2.00
19706900--19706937	19	2.0	20	89	5	60	47	7	13	31	1.71
19717360--19717449	33	2.8	30	78	13	92	65	4	1	28	1.19
19717377--19717449	29	2.7	27	80	15	80	67	1	1	30	1.08
19717375--19717462	30	3.0	30	85	6	108	64	2	2	30	1.18
19718205--19718546	21	15.8	21	75	10	296	34	23	24	18	1.96
19718205--19718585	42	8.7	42	77	12	320	33	23	24	18	1.97
19718272--19718304	17	1.9	17	100	0	66	39	24	30	6	1.79
19718378--19718516	49	2.8	49	84	0	188	35	24	22	17	1.95
19718448--19718504	28	2.0	28	89	0	87	42	22	19	15	1.89
19718427--19718585	70	2.3	70	91	0	246	34	23	22	19	1.96
19718357--19718573	119	1.8	119	92	0	371	36	23	21	17	1.94
19719603--19719627	9	2.8	9	100	0	50	20	12	24	44	1.85
19719678--19719712	17	2.1	17	94	5	63	51	25	11	11	1.71
19723449--19723494	20	2.3	20	84	0	56	78	8	13	0	0.97
19723455--19723516	20	2.7	24	76	19	78	77	9	12	0	0.99
19723461--19723510	20	2.5	20	96	0	91	74	12	14	0	1.09
19725489--19737416	181	66.6	179	74	9	7128	40	7	9	41	1.67
19725489--19737416	361	33.3	358	74	9	7252	40	7	9	41	1.67
19732724--19732768	23	2.0	23	100	0	90	44	6	8	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19733640--19733672	18	1.9	17	88	11	50	48	6	6	39	1.53
19732747--19734371	538	3.0	536	78	8	1387	41	8	9	40	1.68
19734400--19734720	166	1.9	168	82	8	406	41	5	10	42	1.63
19734556--19737400	180	15.8	181	75	6	1940	40	8	9	41	1.69
19736493--19736529	16	2.2	17	90	9	58	37	8	5	48	1.56
19739601--19739643	20	2.1	21	91	4	70	53	0	11	34	1.37
19741277--19741301	12	2.1	12	100	0	50	40	0	8	52	1.31
19743121--19743556	177	2.5	177	79	5	411	40	9	7	42	1.65
19743285--19755282	181	66.7	181	72	10	3134	41	9	8	40	1.67
19743655--19743687	17	2.0	17	88	5	50	39	12	0	48	1.40
19742961--19755374	362	34.5	363	73	10	6639	41	9	8	40	1.67
19745028--19745072	21	2.1	22	91	4	74	64	4	8	22	1.40
19745199--19745440	125	1.9	125	83	4	310	42	9	6	41	1.61
19746709--19746764	18	3.2	18	77	12	62	35	8	7	48	1.62
19745316--19789799	538	81.7	541	70	13	12841	41	9	8	40	1.68
19742961--19789800	361	129.1	361	68	13	10094	41	9	8	40	1.68
19755373--19757537	181	12.1	180	77	5	1728	41	9	8	40	1.68
19757872--19759063	181	6.6	180	78	7	962	40	10	8	40	1.69
19758993--19759137	72	2.0	74	89	8	226	35	11	8	44	1.71
19758681--19759499	436	1.9	435	79	5	945	40	9	9	40	1.70
19759118--19764424	181	29.6	181	74	8	3365	42	9	8	39	1.68
19759281--19760588	715	1.8	711	80	5	1528	42	10	8	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19763687--19764368	179	3.8	176	73	8	509	42	9	8	39	1.67
19764300--19764548	124	2.0	124	83	4	315	46	8	8	36	1.63
19764424--19774397	181	55.7	181	72	10	4990	41	9	8	40	1.68
19764424--19791476	719	37.6	716	70	12	7593	41	10	8	40	1.68
19764427--19791508	900	30.1	898	69	13	7115	41	10	8	40	1.68
19768058--19768093	19	1.9	18	88	5	54	47	0	13	38	1.44
19767599--19768923	691	1.9	689	79	6	1453	40	10	9	39	1.72
19769202--19769339	67	2.1	66	86	5	188	39	11	5	42	1.65
19771273--19771302	15	2.0	15	93	0	51	63	0	0	36	0.95
19769521--19777659	181	45.6	177	71	12	3751	41	10	7	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100