genome.fa.s113.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  52  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12582203--12582284	5	17.2	5	75	18	61	15	2	1	80	0.88
12582203--12582279	20	3.9	19	77	16	86	15	2	1	80	0.89
12582203--12582293	24	3.8	24	85	5	123	16	3	1	79	0.93
12582323--12582937	58	10.7	55	88	10	841	44	7	13	35	1.71
12582321--12582937	115	5.4	114	92	6	907	44	7	13	35	1.71
12583761--12583979	107	2.0	106	83	3	269	44	13	8	34	1.73
12584001--12584043	18	2.4	18	88	0	59	32	13	13	39	1.85
12584965--12585000	19	1.9	19	94	5	65	75	5	8	11	1.19
12586422--12586471	21	2.3	21	86	3	64	4	8	2	86	0.78
12586435--12586472	13	2.9	13	88	0	58	0	7	2	89	0.57
12586412--12586472	20	3.0	20	80	4	68	4	8	3	83	0.89
12587619--12587667	25	2.0	25	88	8	73	63	0	4	32	1.13
12587729--12587768	21	1.9	21	84	0	53	47	5	17	30	1.69
12596579--12596620	9	4.7	9	91	5	59	21	0	9	69	1.17
12596579--12596632	19	2.9	19	83	10	67	24	0	9	66	1.20
12597052--12597105	25	2.2	24	86	6	72	35	3	18	42	1.68
12597121--12597181	31	2.0	31	86	0	86	29	22	21	26	1.99
12597609--12597684	28	2.8	28	75	14	72	13	3	3	78	1.02
12597767--12598043	59	4.7	58	88	9	388	44	7	13	33	1.73
12605970--12606034	16	3.8	16	76	12	51	70	3	4	21	1.19
12607496--12607548	24	2.2	25	86	10	74	64	5	0	30	1.17
12607513--12607559	19	2.5	19	77	16	53	70	4	0	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12614440--12614671	95	2.4	93	77	7	216	38	11	9	40	1.74
12615550--12615592	18	2.4	18	92	3	70	44	16	9	30	1.79
12615696--12615745	20	2.4	21	75	15	59	42	22	10	26	1.84
12615859--12615905	23	2.0	23	91	0	76	44	14	6	34	1.71
12617165--12617237	9	8.9	8	75	11	60	13	16	0	69	1.18
12621473--12621550	39	2.0	39	95	2	140	42	6	7	43	1.59
12621546--12621597	15	3.2	16	81	8	61	15	0	7	76	0.99
12622093--12622145	25	2.1	25	92	0	88	50	7	11	30	1.65
12622150--12622180	2	15.5	2	100	0	62	51	48	0	0	1.00
12622890--12623144	62	4.1	62	74	13	238	44	8	10	36	1.70
12623381--12623437	8	7.1	8	77	0	60	38	0	1	59	1.08
12623389--12623454	30	2.2	30	83	0	78	43	0	1	54	1.09
12623427--12623479	21	2.6	21	94	5	92	49	0	0	50	1.00
12630805--12630847	22	2.0	22	86	9	61	46	0	6	46	1.30
12631356--12631382	14	1.9	14	100	0	54	51	0	7	40	1.30
12631574--12631714	39	3.3	43	70	16	123	54	3	0	41	1.23
12631630--12631721	31	3.1	29	80	16	100	56	5	0	38	1.22
12631574--12631721	27	5.3	27	78	16	133	55	4	0	39	1.24
12631591--12631735	53	2.6	56	76	12	145	53	3	1	42	1.26
12631574--12631723	81	1.8	82	83	7	198	54	4	0	40	1.24
12631750--12631783	16	2.1	16	89	10	52	67	0	0	32	0.91
12631822--12631856	17	2.0	18	88	5	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12631798--12631892	16	5.8	16	75	17	79	44	1	1	53	1.14
12631812--12631892	33	2.5	33	84	8	103	45	0	1	53	1.08
12634168--12634261	30	3.1	30	75	1	89	60	4	2	32	1.28
12636979--12637045	29	2.4	29	80	11	79	50	2	2	43	1.32
12637841--12638097	61	4.2	61	77	7	225	38	16	12	32	1.86
12637856--12638098	62	3.9	61	77	7	222	39	16	12	32	1.85
12637856--12638099	63	3.9	61	77	7	222	38	15	12	32	1.85
12638379--12638425	24	1.9	25	82	4	60	55	10	2	31	1.46
12640184--12640228	20	2.2	20	84	7	56	46	20	13	20	1.83
12646438--12646475	16	2.3	17	81	4	51	39	7	5	47	1.55
12647840--12647931	21	4.2	21	73	10	78	35	5	1	57	1.29
12648648--12648688	19	2.2	19	86	8	57	65	2	0	31	1.05
12649524--12649556	10	3.3	10	87	12	50	57	0	6	36	1.23
12650978--12651031	21	2.6	21	90	0	81	61	5	1	31	1.30
12651213--12651281	24	2.9	23	89	10	104	46	1	0	52	1.09
12651366--12651399	1	34.0	1	87	0	50	94	0	5	0	0.32
12660311--12660346	18	2.0	18	88	0	54	66	0	5	27	1.13
12660879--12660911	2	16.5	2	100	0	66	51	0	0	48	1.00
12661812--12661841	2	15.0	2	92	0	51	46	0	0	53	1.00
12665142--12665171	2	15.0	2	100	0	60	50	0	0	50	1.00
12668269--12668307	12	3.2	12	81	0	51	20	7	58	12	1.58
12673348--12673386	16	2.6	15	84	11	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12674940--12674975	13	2.8	13	86	0	54	47	0	0	52	1.00
12675168--12675201	10	3.5	10	84	8	52	64	0	0	35	0.94
12675613--12675676	31	2.1	31	82	11	78	48	4	0	46	1.23
12675625--12675667	21	2.1	20	83	12	52	51	2	0	46	1.13
12676863--12676900	3	12.7	3	94	0	67	68	0	31	0	0.90
12683045--12683116	26	2.8	26	95	0	126	50	4	26	19	1.66
12690863--12690965	40	2.5	41	74	1	109	29	11	13	45	1.79
12691570--12691650	37	2.2	38	86	4	112	43	0	8	48	1.34
12691677--12691770	41	2.3	42	83	1	118	29	13	8	47	1.73
12691677--12691778	42	2.5	41	83	1	123	31	12	8	47	1.72
12692854--12692906	14	3.7	14	76	2	61	43	0	0	56	0.99
12696774--12696799	2	13.0	2	100	0	52	0	50	0	50	1.00
12698693--12698730	19	2.0	19	100	0	76	21	21	36	21	1.95
12699002--12699172	86	2.0	86	88	0	252	22	20	40	16	1.91
12702686--12702813	65	2.0	65	87	3	188	24	23	8	43	1.81
12709417--12709447	16	1.9	16	93	0	53	12	0	35	51	1.40
12709434--12709486	21	2.5	20	77	14	54	11	1	33	52	1.48
12709462--12709553	14	6.3	15	71	15	61	21	1	29	47	1.58
12709634--12709671	16	2.4	16	86	8	51	28	5	0	65	1.14
12711251--12711290	15	2.6	14	88	11	53	27	2	0	70	1.01
12717559--12717601	22	2.0	22	81	9	52	58	6	4	30	1.45
12718797--12718912	57	2.1	56	91	4	189	35	5	14	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12718984--12719027	15	2.8	16	79	10	54	20	18	0	61	1.35
12719590--12719808	112	2.0	112	81	3	262	43	10	8	36	1.70
12725988--12726254	111	2.4	113	82	6	318	46	5	8	38	1.60
12726088--12726345	113	2.3	113	83	6	301	48	6	8	37	1.59
12726860--12726899	18	2.1	19	90	9	64	32	25	0	42	1.55
12728567--12728693	62	2.0	62	100	0	254	25	3	11	60	1.45
12728567--12728659	30	3.0	32	61	12	75	24	4	13	56	1.55
12728659--12728700	17	2.4	19	84	11	54	21	0	4	73	1.01
12731840--12731939	51	2.0	51	94	4	175	37	3	27	33	1.72
12733798--12733830	17	1.9	17	93	0	57	57	0	6	36	1.23
12736352--12736386	17	2.1	17	88	0	52	51	14	20	14	1.76
12736845--12736892	24	2.0	24	84	8	62	27	4	6	62	1.38
12736870--12736965	41	2.3	41	92	0	156	36	4	3	56	1.34
12736870--12736982	20	5.6	20	83	7	129	35	3	4	56	1.36
12737053--12737114	24	2.6	24	82	7	72	37	1	8	53	1.40
12740735--12740759	1	25.0	1	100	0	50	0	0	0	100	0.00
12740934--12740964	2	15.5	2	100	0	62	51	0	0	48	1.00
12747050--12747233	102	1.8	101	88	4	282	38	24	13	24	1.91
12749712--12749750	19	2.0	20	95	5	71	69	0	0	30	0.89
12753088--12753135	22	2.2	22	92	0	78	25	8	18	47	1.76
12764708--12764743	17	2.2	17	90	5	56	52	0	5	41	1.24
12764912--12764947	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12766233--12766322	31	2.9	31	86	0	126	38	11	7	42	1.69
12766334--12766381	19	2.5	19	79	3	60	37	0	4	58	1.18
12767254--12767295	16	3.0	14	81	18	52	47	0	0	52	1.00
12767385--12767428	18	2.5	18	85	3	54	56	2	0	40	1.11
12772454--12772486	11	2.8	12	86	9	50	69	9	0	21	1.15
12777399--12777497	37	2.6	38	82	14	118	55	8	0	36	1.30
12777410--12777497	37	2.4	37	88	9	126	55	7	0	36	1.29
12777410--12777482	22	3.6	22	74	24	79	54	9	0	35	1.33
12777467--12777497	15	2.1	15	93	0	53	58	3	0	38	1.15
12777890--12777921	10	3.1	11	86	13	50	56	9	0	34	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100