genome.fa.s113.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  30  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8438925--8438991	14	4.9	14	74	7	57	41	4	7	46	1.52
8438925--8438991	18	3.5	18	71	15	62	41	4	7	46	1.52
8439909--8439950	9	4.7	9	77	11	50	45	7	9	38	1.64
8440916--8440971	24	2.4	23	80	11	60	7	21	12	58	1.57
8441605--8441642	2	19.5	2	89	5	60	50	0	0	50	1.00
8442291--8442325	5	6.8	5	90	3	52	34	0	0	65	0.93
8442291--8442329	15	2.6	16	84	12	55	30	0	0	69	0.89
8444379--8444420	16	2.6	16	80	0	57	28	2	2	66	1.16
8447216--8447278	28	2.3	27	74	15	65	80	9	4	4	0.99
8448372--8448404	17	1.9	17	100	0	66	51	18	6	24	1.68
8448682--8448919	66	3.6	65	76	6	183	23	19	10	46	1.81
8448616--8449182	65	8.7	64	73	5	302	22	22	10	44	1.84
8449018--8449208	65	2.9	65	78	4	163	22	23	9	43	1.83
8454317--8454382	29	2.2	30	94	2	116	12	16	19	51	1.75
8455934--8455984	2	25.5	2	95	0	93	1	49	0	49	1.12
8460698--8460769	36	2.0	36	100	0	144	25	16	8	50	1.73
8461288--8461324	2	18.5	2	100	0	74	0	48	0	51	1.00
8475184--8475225	22	1.9	22	85	0	57	35	9	9	45	1.69
8479097--8479138	22	1.9	22	90	0	66	33	11	9	45	1.73
8480492--8480539	18	2.6	18	77	9	53	75	0	18	6	1.01
8488897--8488946	18	2.4	21	71	28	52	60	2	2	36	1.20
8489201--8489252	19	2.7	21	85	8	58	71	1	0	26	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8490126--8490172	20	2.3	21	82	10	62	63	2	0	34	1.06
8490508--8490556	26	2.0	25	84	8	64	55	4	0	40	1.19
8491375--8491414	14	2.7	15	84	7	55	52	5	0	42	1.23
8496464--8496528	29	2.1	31	83	8	80	35	3	3	58	1.29
8496496--8496549	24	2.3	23	87	6	72	33	1	0	64	1.04
8496936--8496965	2	15.0	2	100	0	60	50	0	0	50	1.00
8501325--8501376	26	2.0	26	100	0	104	42	3	26	26	1.73
8516391--8516416	13	2.0	13	100	0	52	61	0	0	38	0.96
8517823--8517855	16	2.1	16	94	0	57	33	0	0	66	0.92
8519349--8519428	40	2.0	40	95	0	142	38	13	26	21	1.90
8521053--8521086	17	2.0	17	100	0	68	23	35	11	29	1.90
8521457--8521707	134	1.9	134	92	3	425	31	6	16	45	1.73
8535128--8535825	232	2.9	240	81	10	712	44	4	10	40	1.59
8536316--8536366	20	2.5	21	75	9	52	41	1	0	56	1.10
8537451--8537494	16	2.8	15	86	10	61	43	0	2	54	1.12
8540316--8540341	2	13.0	2	100	0	52	50	0	0	50	1.00
8549973--8550009	19	2.0	18	89	5	56	27	2	0	70	1.01
8550062--8550111	21	2.4	21	83	9	66	42	0	0	58	0.98
8550440--8550480	21	1.9	22	90	5	66	58	0	7	34	1.26
8551635--8551660	3	8.7	3	100	0	52	34	0	0	65	0.93
8552297--8552383	36	2.4	36	86	3	120	39	1	3	56	1.24
8567997--8568029	17	1.9	17	88	11	50	75	0	3	21	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8568016--8568095	29	2.9	28	75	15	76	50	0	2	47	1.14
8569276--8569327	15	3.7	14	78	17	54	51	0	1	46	1.12
8576976--8577010	18	1.9	18	88	0	52	28	2	2	65	1.21
8577182--8577215	15	2.3	15	95	5	61	35	0	0	64	0.94
8582938--8582985	21	2.3	20	80	16	53	18	25	6	50	1.70
8585595--8585628	9	3.8	9	92	0	59	85	0	0	14	0.60
8585583--8585625	12	3.5	12	81	6	50	83	2	0	13	0.74
8585690--8585805	58	2.0	59	86	3	164	35	16	4	43	1.67
8585740--8585879	72	1.9	73	82	5	176	33	11	4	50	1.58
8585812--8585983	61	2.8	59	81	8	177	37	11	3	48	1.56
8586009--8586041	11	3.0	11	95	0	57	81	3	0	15	0.80
8586826--8586864	16	2.4	17	91	8	71	71	0	5	23	1.05
8586826--8586949	3	43.7	3	71	19	79	67	0	5	25	1.18
8587719--8587762	19	2.2	20	84	4	54	65	0	2	31	1.05
8595878--8595940	3	21.0	3	100	0	126	66	0	0	33	0.92
8597242--8597287	14	3.9	12	83	16	53	58	0	2	39	1.10
8599492--8599607	61	1.9	61	80	7	137	50	12	6	31	1.63
8599862--8599909	15	3.3	15	80	11	55	66	0	2	31	1.03
8602899--8603341	117	3.8	117	91	0	715	23	33	23	19	1.97
8606111--8606171	22	2.6	23	84	7	70	34	0	8	57	1.29
8606277--8606357	17	4.8	17	70	10	67	53	0	0	46	1.00
8607060--8607085	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8613800--8613825	5	5.2	5	100	0	52	19	0	0	80	0.71
8613882--8613932	14	3.5	15	74	17	54	68	9	1	19	1.27
8613883--8613944	27	2.2	28	94	2	108	69	11	1	17	1.26
8614273--8614311	20	1.9	21	84	5	53	56	28	5	10	1.54
8614271--8614317	20	2.3	21	74	3	51	55	23	8	12	1.64
8615137--8615182	23	2.0	23	86	0	65	43	6	4	45	1.49
8616672--8616830	80	2.0	80	97	0	300	37	7	10	45	1.66
8617445--8617488	12	3.5	12	87	6	61	52	0	2	45	1.13
8622015--8622068	23	2.3	23	96	0	99	22	31	16	29	1.96
8631806--8631922	35	3.4	35	70	7	96	20	18	12	47	1.81
8632015--8632091	34	2.2	35	86	2	111	18	16	12	51	1.75
8631845--8632096	136	1.9	135	83	5	330	21	18	12	47	1.81
8632391--8632434	15	3.1	15	78	18	58	54	0	2	43	1.12
8632389--8632430	21	2.0	21	90	0	66	50	0	2	47	1.14
8632403--8632435	12	2.8	12	95	0	57	54	0	0	45	0.99
8632596--8632630	16	2.2	16	89	0	52	34	42	20	2	1.66
8633506--8633553	15	2.9	16	82	11	62	22	0	4	72	1.01
8633500--8633554	15	3.2	17	80	15	60	21	0	5	72	1.04
8634078--8634126	15	3.3	15	78	21	59	57	18	0	24	1.41
8634372--8634400	14	2.0	15	93	6	51	68	0	6	24	1.13
8635413--8635449	16	2.3	16	100	0	74	40	5	8	45	1.56
8642452--8642517	21	3.2	20	83	8	89	46	0	3	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8642516--8642557	8	4.8	9	80	13	52	64	0	0	35	0.94
8642511--8642566	26	2.2	25	84	9	69	60	0	0	39	0.97
8645846--8645870	5	5.0	5	100	0	50	80	0	0	20	0.72
8646898--8646923	6	4.3	6	100	0	52	0	15	53	30	1.42
8653397--8653433	18	2.1	18	100	0	74	18	27	5	48	1.70
8654188--8654225	2	19.0	2	100	0	76	50	0	50	0	1.00
8658504--8658529	4	6.5	4	100	0	52	26	0	23	50	1.50
8661309--8661333	12	2.1	12	100	0	50	52	24	8	16	1.70
8663941--8664016	31	2.5	30	77	12	91	39	7	3	48	1.51
8665736--8665768	11	2.8	12	86	13	50	45	0	0	54	0.99
8666424--8666734	62	4.9	62	71	15	192	43	8	9	39	1.67
8671041--8671080	2	20.0	2	84	0	53	57	0	0	42	0.98
8671042--8671080	8	4.9	8	96	0	69	58	0	0	41	0.98
8672228--8672281	28	1.9	28	81	7	65	50	1	0	48	1.11
8673010--8673042	2	16.5	2	100	0	66	0	51	0	48	1.00
8683340--8683439	52	1.9	52	85	4	139	30	10	13	47	1.75
8683515--8683862	187	1.9	180	83	4	444	38	8	11	42	1.70
8683742--8683976	125	1.9	122	85	4	319	37	9	8	44	1.67
8684109--8684352	127	1.9	125	84	5	323	36	11	10	40	1.76
8683689--8684609	366	2.5	362	83	4	1084	37	10	10	41	1.75
8684630--8684668	19	2.1	19	95	0	69	28	5	23	43	1.75
8684994--8685049	25	2.1	28	81	12	66	23	7	7	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8688872--8689218	179	1.9	178	84	2	444	39	12	10	38	1.77
8694542--8694581	18	2.3	18	86	4	55	57	7	2	32	1.40
8700627--8700740	56	2.0	56	98	0	219	37	13	12	36	1.82
8710144--8710192	25	2.0	24	88	4	71	28	0	0	71	0.86
8717515--8717556	16	2.6	17	81	7	52	50	0	2	47	1.14
8718453--8718479	2	13.5	2	100	0	54	51	0	0	48	1.00
8718536--8718577	12	3.4	12	78	15	50	26	0	0	73	0.83
8718767--8718801	17	2.0	18	88	5	54	57	0	0	42	0.99
8719172--8719217	21	2.1	23	84	15	62	36	6	0	56	1.25
8720720--8720778	21	2.9	19	79	16	64	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100