genome.fa.s113.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  73  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16110162--16110667	159	3.2	159	75	6	366	22	28	26	22	1.99
16110641--16110693	26	2.0	26	92	7	90	24	20	26	28	1.99
16111704--16111755	26	2.0	26	92	0	86	25	17	28	28	1.97
16111898--16111949	26	2.0	25	88	3	77	28	19	25	26	1.98
16111922--16112321	159	2.5	155	75	8	385	26	28	24	21	1.99
16112612--16112663	26	2.0	26	96	0	95	25	19	28	26	1.98
16112387--16112824	216	2.0	216	88	0	642	25	21	27	25	1.99
16113335--16113387	26	2.0	26	92	7	90	28	20	24	26	1.99
16113360--16113735	153	2.4	153	78	6	389	25	30	25	18	1.98
16113831--16113881	26	2.0	26	88	7	77	27	19	23	29	1.98
16114554--16114605	26	2.0	26	88	7	79	30	19	23	26	1.98
16114895--16114947	26	2.0	26	96	0	97	24	16	28	30	1.97
16115614--16115671	26	2.2	27	87	9	84	25	18	25	29	1.98
16115530--16115906	197	1.9	197	82	6	469	24	28	26	20	1.99
16116218--16116268	26	2.0	26	88	7	77	31	17	23	27	1.97
16117008--16117060	26	2.0	26	85	0	70	28	18	28	24	1.98
16117732--16117784	26	2.0	26	85	7	72	30	20	20	28	1.98
16117765--16118185	158	2.7	157	84	1	502	22	28	28	19	1.98
16117757--16118225	158	3.0	156	79	3	501	22	28	28	20	1.98
16118963--16119041	26	3.0	26	96	3	142	31	18	22	26	1.97
16119692--16119751	26	2.4	25	86	8	79	28	20	21	30	1.98
16119724--16120220	159	3.1	159	74	9	431	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16120201--16120253	26	2.0	26	89	7	81	24	20	28	26	1.99
16121609--16121661	26	2.0	26	89	7	81	26	22	20	30	1.98
16122606--16122658	26	2.0	26	89	7	81	28	24	18	28	1.98
16122812--16122865	26	2.1	26	92	0	90	25	27	20	25	1.99
16123316--16123368	26	2.0	26	85	7	72	24	22	22	30	1.99
16123659--16123727	26	2.7	26	100	0	138	28	20	20	30	1.97
16130082--16130135	26	2.1	26	92	0	90	25	25	20	27	1.99
16130428--16130479	26	2.0	26	85	14	72	28	26	15	28	1.96
16131336--16131387	26	2.0	26	88	7	79	32	21	17	28	1.96
16131462--16131761	158	1.9	159	81	2	370	19	26	31	24	1.98
16132569--16132621	26	2.0	26	85	7	72	24	26	18	30	1.98
16132753--16132805	26	2.0	26	89	7	81	28	18	18	33	1.95
16133120--16133172	26	2.0	26	89	7	81	28	22	18	30	1.98
16133320--16133369	26	1.9	26	91	0	82	24	30	18	28	1.97
16133659--16133710	26	2.0	25	92	3	86	30	21	17	30	1.96
16134384--16134436	26	2.0	26	85	7	72	24	26	18	30	1.98
16134568--16134620	26	2.0	26	89	7	81	28	18	18	33	1.95
16134935--16134987	26	2.0	26	89	7	81	28	22	18	30	1.98
16135135--16135184	26	1.9	26	87	0	73	24	28	18	30	1.97
16135474--16135525	26	2.0	25	92	3	86	30	21	17	30	1.96
16136503--16136535	11	3.0	11	100	0	66	27	36	27	9	1.87
16137116--16137165	26	1.9	26	84	8	66	24	26	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16137617--16137669	26	2.0	26	89	7	81	28	16	18	35	1.93
16137858--16138192	158	2.1	157	82	5	397	20	24	28	25	1.99
16138953--16139366	159	2.6	159	82	3	494	18	28	28	23	1.98
16139339--16139391	26	2.0	26	92	7	90	26	24	20	28	1.99
16139845--16139897	26	2.0	26	85	7	72	28	24	18	28	1.98
16140619--16140671	26	2.0	26	89	7	81	28	24	18	28	1.98
16141864--16141950	26	3.3	26	79	6	113	29	22	18	28	1.97
16142097--16142146	26	1.9	26	95	0	91	30	30	12	28	1.92
16142624--16142675	26	2.0	26	88	0	77	28	25	19	26	1.98
16142340--16142893	184	3.0	183	75	4	549	22	24	27	26	2.00
16143622--16143674	26	2.0	26	92	0	88	28	28	20	22	1.99
16143845--16143876	16	2.0	16	93	0	55	12	21	40	25	1.88
16144417--16144469	26	2.0	26	92	0	88	26	26	20	26	1.99
16144915--16144970	26	2.2	26	90	0	85	30	25	16	28	1.96
16145127--16145178	26	2.0	26	92	0	86	28	28	17	25	1.97
16145196--16145496	158	1.9	158	83	1	388	17	25	31	24	1.97
16146078--16146130	26	2.0	26	89	7	81	26	28	18	26	1.98
16147054--16147106	26	2.0	26	89	7	81	26	22	22	28	1.99
16147777--16147829	26	2.0	26	92	0	88	30	26	16	26	1.97
16147943--16148304	158	2.3	157	79	4	359	20	24	29	25	1.99
16148278--16148356	26	3.0	26	94	0	131	31	22	18	26	1.97
16150093--16150144	26	2.0	26	85	10	72	28	28	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16150248--16150928	158	4.3	158	76	6	516	21	26	28	23	1.99
16150364--16151093	317	2.3	316	78	6	769	21	26	27	24	1.99
16151240--16151292	26	2.0	26	85	7	72	26	26	20	26	1.99
16151839--16151877	13	3.0	13	84	0	60	15	53	15	15	1.73
16151915--16151967	26	2.0	26	92	0	88	28	28	18	24	1.98
16152953--16153005	26	2.0	26	82	13	65	26	26	18	28	1.98
16153053--16153484	159	2.7	160	75	3	426	17	28	30	23	1.97
16153458--16153533	26	2.9	26	92	0	116	28	19	17	34	1.94
16154745--16154797	26	2.0	26	85	7	72	30	22	16	30	1.96
16154813--16155103	159	1.8	158	79	2	341	18	25	30	24	1.98
16154771--16155134	159	2.3	157	73	9	333	20	25	29	24	1.99
16155444--16155496	26	2.0	26	88	0	79	30	24	20	24	1.99
16155470--16155999	159	3.3	157	74	6	487	22	27	27	22	1.99
16156115--16156167	26	2.0	26	85	7	72	26	22	22	28	1.99
16156595--16156660	26	2.5	26	87	0	87	30	24	19	25	1.98
16156614--16156670	26	2.1	27	93	3	98	26	28	19	26	1.99
16157656--16157708	26	2.0	26	92	7	90	30	22	16	30	1.96
16157865--16157917	26	2.0	26	85	7	72	26	24	22	26	2.00
16158551--16158603	26	2.0	26	96	0	97	30	28	16	24	1.97
16158247--16158635	196	2.0	197	83	2	487	23	25	27	23	2.00
16160447--16160499	26	2.0	26	89	7	81	24	24	20	30	1.99
16160632--16160684	26	2.0	26	92	7	90	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16160829--16160881	26	2.0	26	92	0	88	28	28	18	24	1.98
16160862--16161358	158	3.1	158	74	4	381	22	24	28	24	2.00
16161491--16161884	185	2.1	184	80	3	434	22	25	27	24	2.00
16160609--16162213	857	1.9	862	81	6	1967	22	25	27	24	2.00
16161711--16162213	158	3.2	155	74	10	455	19	24	30	25	1.98
16162187--16162239	26	2.0	26	89	7	81	26	22	20	30	1.98
16162384--16162436	26	2.0	26	89	7	81	26	22	20	30	1.98
16162506--16162543	11	3.5	11	92	0	67	21	28	31	18	1.97
16169108--16169160	26	2.0	26	82	7	63	30	18	20	30	1.97
16169558--16170823	158	7.8	159	71	9	526	19	27	30	23	1.98
16169558--16170164	318	1.9	317	79	5	670	18	27	30	23	1.98
16171043--16171096	26	2.1	26	92	0	90	29	27	18	24	1.98
16171544--16171596	26	2.0	26	85	7	72	26	20	20	32	1.98
16172080--16172132	26	2.0	26	89	7	81	28	24	18	28	1.98
16173273--16173325	26	2.0	26	85	7	72	26	24	20	28	1.99
16173641--16173693	26	2.0	26	85	7	72	28	22	18	30	1.98
16173834--16173887	26	2.1	26	89	6	83	25	22	20	31	1.98
16173605--16174088	196	2.5	194	80	7	535	22	24	27	25	2.00
16174034--16174086	26	2.0	26	85	7	72	30	26	16	26	1.97
16174376--16174428	26	2.0	26	92	7	90	26	22	20	30	1.98
16175099--16175151	26	2.0	26	92	0	88	32	28	15	24	1.95
16175600--16175652	26	2.0	26	85	7	72	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16175776--16176192	184	2.3	184	82	6	477	22	25	26	25	2.00
16176143--16176824	158	4.3	158	75	6	542	20	25	29	24	1.99
16176652--16176999	184	1.9	184	85	1	482	20	25	29	25	1.99
16179037--16179089	26	2.0	26	86	13	74	30	24	16	28	1.97
16179245--16179297	26	2.0	26	88	0	79	28	26	18	26	1.98
16179588--16179640	26	2.0	26	89	7	81	28	24	18	28	1.98
16180310--16180361	26	2.0	26	88	0	77	28	26	17	26	1.97
16180799--16180850	25	2.0	26	85	10	72	25	25	19	30	1.98
16180994--16181046	26	2.0	26	92	0	88	28	28	18	24	1.98
16181492--16181544	26	2.0	26	89	7	81	26	18	20	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100