genome.fa.s113.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  25  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7312826--7312859	18	1.9	18	88	5	52	61	2	2	32	1.26
7313640--7313679	18	2.1	20	90	9	66	50	5	10	35	1.58
7323073--7323281	56	3.6	57	73	15	164	50	5	8	35	1.56
7323201--7323334	71	1.9	71	81	3	162	51	6	8	33	1.58
7323164--7323402	130	1.9	128	84	5	329	48	6	10	34	1.65
7323300--7323521	58	3.8	58	78	8	229	49	6	11	32	1.65
7323300--7323521	115	1.9	115	87	2	320	49	6	11	32	1.65
7323493--7323537	17	2.7	17	89	3	65	57	4	0	37	1.19
7323567--7323607	16	2.6	16	81	14	57	56	4	2	36	1.34
7323454--7323731	148	1.9	148	88	5	429	50	4	8	36	1.54
7323640--7323686	17	2.8	17	93	0	76	53	6	2	38	1.39
7323457--7323731	74	3.7	74	86	6	362	50	4	8	36	1.53
7334810--7334850	16	2.5	16	88	11	57	26	21	17	34	1.95
7335151--7335256	44	2.4	44	81	6	126	28	9	13	49	1.73
7335193--7335325	65	2.0	65	88	0	194	26	10	16	46	1.79
7335265--7335478	86	2.5	86	86	3	286	24	13	20	42	1.87
7335258--7335443	44	4.3	43	85	7	268	22	11	19	45	1.83
7335258--7335478	44	5.1	43	83	6	248	23	12	20	42	1.86
7335671--7335742	7	10.3	7	77	16	62	26	1	2	69	1.10
7335671--7335725	19	3.1	18	76	23	55	27	0	1	70	0.97
7335978--7336013	13	2.6	14	86	8	56	16	2	13	66	1.36
7336613--7336773	54	2.9	54	70	12	155	51	4	10	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336594--7336887	57	4.9	57	70	18	179	51	5	11	32	1.60
7336751--7336782	14	2.3	14	94	0	55	65	6	0	28	1.16
7336667--7336959	129	2.3	129	87	6	400	49	6	10	32	1.63
7336699--7337109	129	3.0	130	78	15	402	50	5	9	34	1.59
7336950--7336986	17	2.2	17	95	4	67	64	5	2	27	1.28
7336949--7336988	16	2.5	15	85	14	62	62	5	2	30	1.29
7336852--7337108	74	3.5	75	87	6	348	49	6	8	35	1.59
7337018--7337060	17	2.6	16	86	13	61	55	6	0	37	1.27
7337224--7337253	14	2.2	13	94	5	51	16	0	0	83	0.65
7343324--7343408	44	1.9	44	87	0	125	42	10	2	44	1.51
7343324--7343418	22	4.3	22	82	7	104	42	10	3	44	1.55
7343404--7343465	22	2.8	22	75	0	61	32	8	4	54	1.51
7343565--7343609	16	2.9	15	87	6	63	40	4	4	51	1.42
7343624--7343731	43	2.5	44	86	1	146	37	5	7	50	1.54
7343637--7343708	22	3.3	22	74	3	74	37	6	6	48	1.57
7343649--7343723	22	3.5	22	75	8	82	37	5	6	50	1.51
7344184--7344317	22	6.4	22	73	10	84	35	13	5	45	1.66
7344288--7344405	44	2.7	43	79	10	125	36	10	1	51	1.46
7344310--7344346	12	3.2	12	77	14	51	32	5	0	62	1.18
7344288--7344359	22	3.3	21	80	7	81	36	11	1	51	1.46
7344192--7344358	85	2.0	85	80	4	194	35	11	4	47	1.60
7344484--7344557	21	3.5	20	71	15	51	31	10	9	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7344169--7344598	22	19.9	22	70	9	78	35	11	4	48	1.60
7344675--7344738	22	2.9	22	71	0	56	37	9	3	50	1.51
7348043--7348185	62	2.4	61	88	9	213	43	6	6	44	1.55
7351867--7351926	30	2.0	30	100	0	120	46	23	3	26	1.68
7353439--7353489	26	1.9	27	92	4	86	19	3	1	74	1.07
7353399--7353488	6	14.5	6	70	19	51	18	2	5	73	1.14
7354495--7354546	18	2.9	18	73	21	54	25	5	11	57	1.55
7354620--7354666	24	1.9	25	86	4	69	48	4	6	40	1.48
7360611--7360650	3	13.3	3	100	0	80	32	0	0	67	0.91
7361090--7361164	23	3.1	24	78	17	68	76	0	10	13	1.03
7361125--7361172	17	2.8	18	90	9	82	77	0	4	18	0.93
7361125--7361172	9	5.4	9	90	5	71	77	0	4	18	0.93
7361104--7361172	8	8.4	8	75	12	59	76	0	7	15	0.99
7361104--7361172	17	4.2	17	80	10	72	76	0	7	15	0.99
7362536--7363035	41	12.1	41	82	3	547	25	17	14	42	1.87
7362536--7363035	83	6.1	84	83	3	545	25	17	14	42	1.87
7362536--7363035	124	4.0	125	83	3	570	25	17	14	42	1.87
7363281--7363338	6	9.5	6	83	12	66	15	0	1	82	0.74
7363288--7363338	5	9.8	5	85	12	59	15	0	0	84	0.63
7363287--7363338	25	2.1	25	92	7	88	15	0	0	84	0.62
7363293--7363333	19	2.1	20	95	4	75	14	0	0	85	0.60
7367620--7367678	28	2.1	28	93	0	100	32	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7373345--7373382	2	19.0	2	100	0	76	50	0	0	50	1.00
7376260--7376300	21	2.0	20	85	4	55	70	2	4	21	1.18
7377206--7377260	28	2.0	27	85	3	74	30	0	5	63	1.17
7380204--7380232	14	2.0	15	93	6	51	62	0	6	31	1.22
7382759--7382792	2	17.0	2	100	0	68	50	0	0	50	1.00
7385669--7385710	22	2.0	21	85	4	57	71	2	4	21	1.16
7386602--7386656	28	2.0	27	85	3	74	30	0	5	63	1.17
7387716--7387761	25	1.9	25	91	8	78	30	0	13	56	1.37
7390087--7390127	16	2.5	17	84	11	59	63	0	0	36	0.95
7398614--7398664	23	2.2	23	86	10	68	52	1	0	45	1.12
7405752--7405781	13	2.4	12	94	5	51	76	6	0	16	0.99
7405815--7406038	59	3.7	59	82	9	245	33	15	5	44	1.71
7405815--7406037	125	1.8	119	85	5	311	34	15	5	44	1.71
7405925--7406050	66	1.9	68	83	6	168	32	12	5	49	1.64
7406105--7406148	6	7.5	6	80	14	56	81	0	2	15	0.78
7406077--7406207	12	9.5	13	70	19	61	73	3	3	19	1.13
7406100--7406161	11	5.7	11	83	9	65	79	0	1	19	0.82
7406628--7406688	31	2.0	31	87	6	88	26	22	24	26	2.00
7406703--7406760	24	2.4	24	97	0	107	44	12	3	39	1.58
7407021--7407116	43	2.2	43	81	17	119	65	3	9	21	1.35
7407170--7407209	3	12.7	3	84	10	53	70	0	0	30	0.88
7407169--7407202	16	2.1	16	94	0	59	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7407165--7407209	19	2.4	19	88	0	63	71	0	0	28	0.87
7408420--7408474	16	3.1	19	70	20	55	49	1	9	40	1.45
7416078--7416116	18	2.1	19	86	13	55	66	7	2	23	1.30
7416202--7416255	16	3.3	16	79	10	56	22	11	9	57	1.61
7418360--7418400	16	2.5	17	80	11	50	60	0	2	36	1.10
7420822--7420862	20	2.0	20	85	0	55	41	7	12	39	1.70
7424284--7424316	2	16.5	2	100	0	66	48	0	0	51	1.00
7424734--7424782	24	2.0	24	84	15	64	44	0	6	48	1.27
7426512--7426568	21	2.6	21	76	13	62	56	0	0	43	0.99
7427987--7428048	21	3.1	20	75	13	65	41	1	0	56	1.09
7428041--7428078	16	2.6	14	88	12	51	55	5	0	39	1.23
7427982--7428069	40	2.2	40	79	15	94	45	3	0	51	1.18
7428868--7428906	13	3.0	13	80	0	51	46	2	15	35	1.60
7429181--7429253	29	2.5	30	80	18	84	58	1	0	39	1.06
7430093--7430139	23	2.2	23	85	11	64	55	2	2	40	1.24
7433066--7433100	17	2.1	17	100	0	70	34	0	5	60	1.21
7433248--7433290	20	2.2	20	83	8	52	55	2	0	41	1.12
7433828--7433884	31	2.0	30	80	16	68	47	1	0	50	1.11
7433953--7434019	22	3.0	22	81	16	84	37	2	1	58	1.23
7434065--7434148	31	2.7	32	78	14	102	38	0	1	60	1.04
7434065--7434148	30	2.7	32	81	10	102	38	0	1	60	1.04
7434105--7434158	22	2.5	22	78	0	63	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7434127--7434184	27	2.0	31	87	12	88	27	1	1	68	1.08
7434124--7434165	12	3.2	13	80	12	50	30	0	0	69	0.89
7435423--7435447	2	12.5	2	100	0	50	52	0	0	48	1.00
7443164--7443219	21	2.5	23	91	8	98	50	0	0	50	1.00
7443164--7443220	22	2.6	21	82	17	80	49	0	0	50	1.00
7452218--7452287	36	1.9	37	82	8	90	48	2	1	47	1.25
7453948--7454075	62	2.1	62	96	0	238	36	10	19	33	1.85
7464492--7464526	2	17.5	2	100	0	70	51	0	48	0	1.00
7468145--7468169	6	4.2	6	100	0	50	80	0	0	20	0.72
7481758--7481809	15	3.5	15	76	10	52	19	0	3	76	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100