genome.fa.s113.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  68  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15740226--15740944	318	2.3	317	83	1	886	20	25	31	22	1.98
15741543--15741621	26	3.0	26	81	7	106	27	21	21	29	1.99
15742234--15742286	26	2.0	26	92	7	90	26	22	20	30	1.98
15744219--15744271	26	2.0	26	85	0	70	28	26	20	24	1.99
15744575--15744627	26	2.0	26	92	0	88	26	26	20	26	1.99
15744524--15744970	184	2.4	184	83	2	542	20	28	27	23	1.99
15745030--15745378	159	2.2	159	81	3	382	20	26	27	25	1.99
15745096--15745435	158	2.1	159	81	1	387	21	25	28	24	1.99
15745553--15745985	184	2.4	184	81	2	512	21	26	27	24	1.99
15745800--15746163	159	2.3	157	75	10	355	20	26	29	23	1.99
15746447--15746496	26	1.9	26	91	0	82	22	28	22	28	1.99
15747630--15747975	158	2.2	157	78	8	364	18	26	29	25	1.98
15748232--15748284	26	2.0	26	92	7	90	26	26	20	26	1.99
15749697--15749752	26	2.2	26	90	0	85	30	25	17	26	1.97
15750381--15750737	158	2.3	158	80	3	371	19	23	29	27	1.98
15751331--15751383	26	2.0	26	92	0	88	26	26	20	26	1.99
15751357--15751737	159	2.4	157	76	4	359	20	26	30	22	1.98
15751845--15751897	26	2.0	26	88	0	79	28	26	18	26	1.98
15751787--15752437	184	3.5	184	73	10	589	20	26	27	25	1.99
15752539--15752910	157	2.4	158	83	4	430	19	24	29	26	1.99
15753309--15753359	26	2.0	26	92	7	86	29	15	25	29	1.96
15753335--15753677	159	2.2	159	80	2	377	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753651--15753703	26	2.0	26	88	0	79	24	16	28	30	1.97
15753860--15753912	26	2.0	26	89	7	81	30	18	22	28	1.98
15754360--15754412	26	2.0	26	85	0	70	30	20	22	26	1.98
15755071--15755123	26	2.0	26	89	7	81	28	18	24	28	1.98
15755094--15755469	158	2.4	158	77	7	379	25	29	26	18	1.98
15760569--15760878	158	2.0	158	85	2	417	25	30	24	19	1.98
15761046--15761100	26	2.1	26	86	0	74	25	12	27	34	1.92
15761763--15761815	26	2.0	26	89	7	81	28	18	22	30	1.98
15762223--15762275	26	2.0	26	85	7	72	28	22	18	30	1.98
15762920--15762972	26	2.0	26	89	7	81	30	22	18	28	1.98
15763635--15763689	26	2.1	26	82	0	65	34	25	12	27	1.92
15763693--15764167	159	3.0	158	77	5	458	20	26	29	23	1.99
15764140--15764192	26	2.0	26	85	7	72	28	20	20	30	1.98
15764350--15764401	26	2.0	25	92	3	86	25	28	21	25	1.99
15764690--15764742	26	2.0	26	89	7	81	28	24	18	28	1.98
15765407--15765461	26	2.1	26	96	0	101	36	27	10	25	1.89
15766121--15766172	26	2.0	25	92	3	86	25	28	21	25	1.99
15765387--15766737	705	1.9	708	79	4	1526	22	24	27	24	2.00
15767790--15767841	26	2.0	25	85	3	68	28	23	19	28	1.98
15767924--15768316	160	2.5	158	80	6	429	20	27	27	24	1.99
15768489--15768541	26	2.0	26	85	7	72	26	26	18	28	1.98
15768832--15768884	26	2.0	26	88	0	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15770056--15770108	26	2.0	26	89	7	81	28	24	18	28	1.98
15770316--15770678	196	1.9	196	82	3	471	23	25	26	23	2.00
15770963--15771358	184	2.2	184	81	5	453	22	25	27	25	2.00
15771305--15771357	26	2.0	26	92	0	88	24	24	22	28	2.00
15772471--15772523	26	2.0	26	92	7	90	26	24	20	28	1.99
15772681--15773246	196	3.0	184	77	8	598	21	26	28	23	1.99
15773200--15773563	158	2.3	159	79	6	364	22	26	27	23	2.00
15773384--15773772	184	2.1	183	82	2	449	23	26	26	22	2.00
15773719--15773771	26	2.0	26	88	0	79	26	24	20	28	1.99
15774675--15775129	184	2.5	182	81	4	501	20	26	28	24	1.99
15775078--15775129	26	2.0	26	88	7	79	28	25	17	28	1.97
15777170--15777226	26	2.1	27	80	6	71	28	26	15	29	1.96
15777177--15777229	26	2.0	26	88	0	79	32	26	15	26	1.95
15777507--15777559	26	2.0	26	88	0	79	26	28	18	26	1.98
15777691--15777743	26	2.0	26	89	7	81	26	26	20	26	1.99
15778386--15778438	26	2.0	26	85	0	70	30	26	16	26	1.97
15778864--15778916	26	2.0	26	92	7	90	26	22	20	30	1.98
15779073--15779125	26	2.0	26	92	0	88	26	26	20	26	1.99
15779099--15779507	159	2.6	158	71	5	347	21	24	30	23	1.99
15780903--15781350	159	2.8	159	81	3	467	20	28	28	21	1.98
15781324--15781376	26	2.0	26	89	7	81	28	22	20	28	1.99
15782089--15782592	159	3.2	157	82	4	523	20	28	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15782566--15782618	26	2.0	26	89	7	81	26	22	20	30	1.98
15783326--15783988	159	4.2	159	78	5	638	19	28	31	21	1.97
15783326--15783989	319	2.1	318	85	1	891	19	28	31	21	1.97
15784704--15785361	159	4.1	158	78	5	610	19	27	31	21	1.97
15786061--15786113	26	2.0	26	85	0	70	26	26	20	26	1.99
15786562--15786614	26	2.0	26	85	7	72	28	24	16	30	1.97
15786758--15786810	26	2.0	26	89	7	81	28	24	18	28	1.98
15786527--15786981	196	2.3	196	83	2	556	22	24	28	24	2.00
15787612--15787664	26	2.0	26	100	0	106	26	26	20	26	1.99
15787808--15787860	26	2.0	26	85	7	72	28	22	18	30	1.98
15787575--15788030	196	2.3	196	90	1	693	19	26	30	23	1.98
15787874--15788188	170	1.9	169	87	2	461	19	26	32	22	1.97
15788174--15788226	26	2.0	26	88	0	79	28	26	18	26	1.98
15788200--15788691	158	3.1	157	71	5	427	20	26	28	24	1.99
15790606--15790664	24	2.5	24	91	0	100	28	37	15	18	1.91
15790711--15790751	20	2.0	22	85	9	59	29	31	12	26	1.92
15793236--15793288	26	2.0	26	88	0	79	28	26	18	26	1.98
15793579--15793631	26	2.0	26	85	7	72	28	22	18	30	1.98
15794300--15794352	26	2.0	26	92	0	88	28	28	18	24	1.98
15794498--15794550	26	2.0	26	96	0	97	26	28	20	24	1.99
15794546--15794668	63	2.0	63	96	0	228	30	17	34	17	1.93
15795487--15795539	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15795683--15795735	26	2.0	26	85	7	72	32	24	15	28	1.95
15796520--15796572	26	2.0	26	89	7	81	28	22	18	30	1.98
15797583--15797634	26	2.0	26	92	7	88	26	25	19	28	1.98
15798307--15798359	26	2.0	26	85	7	72	30	26	16	26	1.97
15798546--15798595	21	2.4	21	96	0	91	28	22	48	2	1.62
15798405--15798749	180	1.9	179	86	1	494	17	27	34	20	1.95
15798568--15798883	158	2.0	158	79	6	345	19	28	30	22	1.98
15798988--15799040	26	2.0	26	89	7	81	28	24	18	28	1.98
15799470--15799522	26	2.0	26	92	7	90	26	24	20	28	1.99
15799558--15800647	158	6.9	157	74	7	664	19	26	30	23	1.98
15800621--15800673	26	2.0	26	92	7	90	26	24	20	28	1.99
15801099--15801154	26	2.2	26	83	6	69	30	17	19	32	1.95
15800564--15801501	479	2.0	481	83	1	1209	21	26	28	23	1.99
15801277--15801639	158	2.3	158	81	4	410	18	26	30	24	1.98
15802812--15802864	26	2.0	26	92	7	90	30	26	16	26	1.97
15802995--15803047	26	2.0	26	85	7	72	28	22	18	30	1.98
15803510--15803562	26	2.0	26	92	7	90	26	24	20	28	1.99
15803622--15803651	15	2.0	15	93	0	51	16	46	30	6	1.73
15805152--15805203	26	2.0	25	85	10	70	28	25	21	25	1.99
15805797--15805823	13	2.1	13	100	0	54	7	37	25	29	1.83
15805860--15805912	26	2.0	26	96	0	97	26	24	20	28	1.99
15807003--15807306	159	1.9	158	80	6	346	19	27	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15807613--15807664	26	2.0	26	88	7	79	32	23	17	26	1.96
15807331--15807684	195	1.8	197	82	2	462	21	25	27	25	1.99
15808589--15808641	26	2.0	26	96	0	97	26	28	20	24	1.99
15809310--15809362	26	2.0	26	88	0	79	28	26	18	26	1.98
15809336--15809678	158	2.2	158	78	7	365	21	25	27	24	2.00
15809652--15809704	26	2.0	26	92	7	90	26	24	20	28	1.99
15809856--15809913	26	2.2	26	84	9	73	31	25	17	25	1.97
15810204--15810256	26	2.0	26	92	7	90	28	26	18	26	1.98
15811609--15811661	26	2.0	26	89	7	81	30	24	16	28	1.97
15811952--15812004	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100